Wall clock time and date at job start Tue Mar 31 2020 06:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47187 * 2 1 4 4 H 1.08999 * 109.46592 * 305.64505 * 3 2 1 5 5 O 1.42901 * 109.47009 * 65.64404 * 3 2 1 6 6 C 1.42901 * 113.99911 * 258.85684 * 5 3 2 7 7 C 1.50698 * 109.46938 * 185.64588 * 3 2 1 8 8 O 1.21279 * 119.99607 * 244.99456 * 7 3 2 9 9 N 1.34781 * 120.00039 * 65.00082 * 7 3 2 10 10 C 1.47387 * 135.85231 * 359.62540 * 9 7 3 11 11 C 1.52071 * 87.40901 * 154.38891 * 10 9 7 12 12 C 1.47387 * 135.85187 * 180.02562 * 9 7 3 13 13 C 1.53513 * 117.21407 * 267.28066 * 11 10 9 14 14 C 1.54624 * 102.70309 * 262.92726 * 13 11 10 15 15 N 1.47149 * 107.37951 * 339.38548 * 14 13 11 16 16 C 1.36936 * 125.57883 * 179.03972 * 15 14 13 17 17 H 1.08004 * 119.99768 * 180.02562 * 16 15 14 18 18 C 1.38806 * 120.00363 * 0.02562 * 16 15 14 19 19 N 1.31614 * 119.99865 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99984 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46883 * 60.00272 * 20 18 16 22 22 H 1.48500 * 109.46851 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47118 * 300.00217 * 20 18 16 24 24 C 1.47751 * 108.83605 * 359.08876 * 15 14 13 25 25 H 1.08996 * 109.46968 * 295.81626 * 1 2 3 26 26 H 1.09001 * 109.47292 * 175.80941 * 1 2 3 27 27 H 1.09001 * 109.46953 * 55.81453 * 1 2 3 28 28 H 1.09004 * 109.46900 * 119.99433 * 2 1 3 29 29 H 1.08994 * 109.47358 * 240.00045 * 2 1 3 30 30 H 1.08998 * 109.47263 * 54.75696 * 6 5 3 31 31 H 1.09000 * 109.47096 * 174.76515 * 6 5 3 32 32 H 1.09004 * 109.47286 * 294.76308 * 6 5 3 33 33 H 1.08995 * 113.54405 * 268.99933 * 10 9 7 34 34 H 1.09007 * 113.54413 * 39.68361 * 10 9 7 35 35 H 1.08998 * 113.54568 * 320.32208 * 12 9 7 36 36 H 1.09002 * 113.54490 * 90.93091 * 12 9 7 37 37 H 1.09001 * 110.76482 * 21.23153 * 13 11 10 38 38 H 1.09004 * 110.76634 * 144.62540 * 13 11 10 39 39 H 1.09008 * 109.86497 * 98.83633 * 14 13 11 40 40 H 1.09004 * 109.86756 * 219.93392 * 14 13 11 41 41 H 0.97008 * 120.00131 * 179.97438 * 19 18 16 42 42 H 1.09003 * 110.40403 * 263.49920 * 24 15 14 43 43 H 1.08998 * 110.40350 * 141.08288 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5965 1.9847 -0.8351 5 8 1.6750 2.0768 1.2274 6 6 0.5383 2.9365 1.1217 7 6 3.5405 1.4448 -0.1398 8 8 4.2332 1.8582 0.7658 9 7 4.1126 0.9875 -1.2712 10 6 3.6331 0.4196 -2.5440 11 6 4.9208 0.9256 -3.1752 12 6 5.4903 0.8311 -1.7712 13 6 4.8861 2.3176 -3.8214 14 6 4.6596 1.9931 -5.3162 15 7 5.0713 0.5966 -5.5300 16 6 5.0084 -0.0794 -6.7193 17 1 5.3357 -1.1071 -6.7741 18 6 4.5240 0.5563 -7.8542 19 7 4.1256 1.8089 -7.7874 20 14 4.4389 -0.3657 -9.4766 21 1 3.5582 -1.5518 -9.3262 22 1 3.8896 0.5295 -10.5264 23 1 5.8018 -0.8075 -9.8669 24 6 5.5625 0.0429 -4.2513 25 1 -0.3633 0.4475 0.9251 26 1 -0.3634 -1.0249 -0.0751 27 1 -0.3633 0.5774 -0.8501 28 1 1.8933 -0.5138 0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 -0.2997 2.3808 0.7010 31 1 0.2692 3.3061 2.1112 32 1 0.7786 3.7784 0.4724 33 1 3.5516 -0.6672 -2.5325 34 1 2.7372 0.9072 -2.9282 35 1 6.1453 1.6622 -1.5101 36 1 5.9289 -0.1402 -1.5425 37 1 4.0599 2.9074 -3.4245 38 1 5.8352 2.8342 -3.6777 39 1 3.6048 2.1105 -5.5650 40 1 5.2640 2.6563 -5.9350 41 1 3.7874 2.2533 -8.5806 42 1 6.6492 0.1108 -4.2002 43 1 5.2398 -0.9918 -4.1363 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072533790.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:08 Heat of formation + Delta-G solvation = -34.398005 kcal Electronic energy + Delta-G solvation = -23157.375237 eV Core-core repulsion = 19818.216418 eV Total energy + Delta-G solvation = -3339.158819 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.01771 -40.22292 -38.50944 -37.27625 -34.50551 -33.93606 -31.34302 -30.48000 -29.14188 -27.50883 -27.19873 -26.32348 -25.14847 -22.97236 -22.12120 -20.68429 -19.73459 -18.58561 -18.35072 -17.91633 -17.08686 -16.72043 -16.59700 -16.27916 -16.04928 -15.58407 -15.16923 -14.84436 -14.54851 -14.13156 -14.10352 -13.76471 -13.70177 -13.44088 -13.31384 -12.99157 -12.86368 -12.73779 -12.67978 -12.30162 -12.24597 -12.05285 -11.91026 -11.82630 -11.74612 -11.63875 -11.23133 -11.03993 -10.64067 -10.39446 -9.77056 -8.83199 -7.79254 -5.13868 1.45262 1.51168 1.53311 1.59244 1.60299 2.54473 2.79972 3.24315 3.37424 3.46718 3.58098 3.79562 3.82005 3.87759 4.06276 4.22706 4.29190 4.34530 4.42059 4.50068 4.53828 4.55515 4.63041 4.70150 4.73988 4.78205 4.81864 4.86678 4.94091 5.04238 5.04939 5.10072 5.18398 5.21909 5.33576 5.52748 5.69797 5.82142 6.04654 6.24546 6.63684 7.04921 7.15883 7.83497 8.47669 9.31016 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024397 B = 0.003986 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.412197 B = 7022.654737 C = 7422.302128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C 0.082 3.918 4 H 0.102 0.898 5 O -0.387 6.387 6 C 0.018 3.982 7 C 0.532 3.468 8 O -0.578 6.578 9 N -0.639 5.639 10 C 0.125 3.875 11 C -0.100 4.100 12 C 0.124 3.876 13 C -0.103 4.103 14 C 0.191 3.809 15 N -0.625 5.625 16 C -0.237 4.237 17 H 0.087 0.913 18 C -0.065 4.065 19 N -0.953 5.953 20 Si 0.974 3.026 21 H -0.275 1.275 22 H -0.299 1.299 23 H -0.280 1.280 24 C 0.152 3.848 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.043 0.957 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.110 0.890 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.015 0.985 40 H 0.003 0.997 41 H 0.245 0.755 42 H 0.032 0.968 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.206 -3.062 14.288 16.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C 0.020 3.980 4 H 0.119 0.881 5 O -0.306 6.306 6 C -0.078 4.078 7 C 0.322 3.678 8 O -0.458 6.458 9 N -0.375 5.375 10 C 0.004 3.996 11 C -0.101 4.101 12 C 0.002 3.998 13 C -0.141 4.141 14 C 0.066 3.934 15 N -0.352 5.352 16 C -0.366 4.366 17 H 0.104 0.896 18 C -0.258 4.258 19 N -0.602 5.602 20 Si 0.803 3.197 21 H -0.201 1.201 22 H -0.226 1.226 23 H -0.206 1.206 24 C 0.027 3.973 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.120 0.880 32 H 0.062 0.938 33 H 0.130 0.870 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.128 0.872 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.033 0.967 40 H 0.021 0.979 41 H 0.054 0.946 42 H 0.050 0.950 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.921 -2.750 14.948 16.701 hybrid contribution 0.001 0.121 -1.394 1.399 sum -6.920 -2.629 13.555 15.444 Atomic orbital electron populations 1.21817 0.93062 1.03337 1.02432 1.21913 0.98492 0.93043 1.03474 1.22007 0.89755 0.96967 0.89230 0.88063 1.87974 1.49583 1.62768 1.30244 1.23215 0.87505 0.92992 1.04092 1.20718 0.90951 0.76645 0.79482 1.90668 1.65772 1.49222 1.40126 1.49806 1.10882 1.61408 1.15365 1.23002 0.97848 1.00233 0.78549 1.22003 0.97511 0.97233 0.93392 1.22828 0.84964 1.03226 0.88780 1.22267 1.01688 0.94881 0.95309 1.20910 0.96779 0.85046 0.90714 1.44814 1.74770 1.10129 1.05445 1.19435 1.35236 0.95777 0.86130 0.89553 1.25571 1.01862 0.97161 1.01171 1.70172 1.49814 1.11838 1.28380 0.85218 0.77824 0.77384 0.79305 1.20053 1.22569 1.20636 1.21297 0.96230 0.96061 0.83727 0.92016 0.90861 0.91690 0.91547 0.89539 0.91407 0.88033 0.93786 0.86979 0.89823 0.90727 0.87238 0.91098 0.91116 0.96680 0.97922 0.94610 0.94993 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 8.79 71.98 0.63 -1.48 16 2 C -0.13 -2.46 5.59 30.60 0.17 -2.29 16 3 C 0.08 1.93 2.51 29.85 0.07 2.00 16 4 H 0.10 2.06 7.70 -2.39 -0.02 2.04 16 5 O -0.39 -10.06 9.67 -129.99 -1.26 -11.32 16 6 C 0.02 0.30 10.37 113.37 1.18 1.48 16 7 C 0.53 16.24 7.43 87.66 0.65 16.89 16 8 O -0.58 -22.84 17.28 15.97 0.28 -22.57 16 9 N -0.64 -17.11 3.65 -859.92 -3.14 -20.25 16 10 C 0.13 3.08 6.43 83.76 0.54 3.62 16 11 C -0.10 -2.92 1.06 -52.62 -0.06 -2.98 16 12 C 0.12 3.19 8.03 83.68 0.67 3.86 16 13 C -0.10 -3.56 6.41 31.32 0.20 -3.36 16 14 C 0.19 8.89 5.39 86.81 0.47 9.36 16 15 N -0.63 -29.61 3.41 -693.46 -2.36 -31.97 16 16 C -0.24 -12.46 10.28 84.03 0.86 -11.60 16 17 H 0.09 4.28 7.83 -2.91 -0.02 4.25 16 18 C -0.06 -3.54 5.49 84.86 0.47 -3.07 16 19 N -0.95 -55.56 10.30 21.65 0.22 -55.33 16 20 Si 0.97 44.03 29.55 68.60 2.03 46.06 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 22 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 24 C 0.15 5.33 6.70 86.23 0.58 5.91 16 25 H 0.06 0.86 6.64 -2.39 -0.02 0.85 16 26 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.09 1.48 6.66 -2.39 -0.02 1.47 16 30 H 0.07 0.87 6.02 -2.39 -0.01 0.86 16 31 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.11 2.30 8.01 -2.39 -0.02 2.28 16 34 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.07 2.00 8.13 -2.39 -0.02 1.98 16 36 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 38 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 39 H 0.01 0.78 7.38 -2.38 -0.02 0.77 16 40 H 0.00 0.14 7.49 -2.38 -0.02 0.12 16 41 H 0.24 14.04 8.31 -92.70 -0.77 13.27 16 42 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.06 1.91 8.00 -2.39 -0.02 1.90 16 Total: -1.00 -71.09 343.19 3.17 -67.92 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 0.98 Total: 9.13 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: 6.44 Total: 18.35 kcal Atomic # 7 Polarization: -102.27 SS G_CDS: -5.28 Total: -107.56 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -0.98 Total: -33.89 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -71.09 3.17 -67.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072533790.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.520 kcal (2) G-P(sol) polarization free energy of solvation -71.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds