Wall clock time and date at job start Tue Mar 31 2020 06:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46945 * 2 1 4 4 H 1.09002 * 109.47498 * 54.26229 * 3 2 1 5 5 O 1.42901 * 109.47221 * 294.26643 * 3 2 1 6 6 C 1.42902 * 114.00199 * 121.65982 * 5 3 2 7 7 C 1.50698 * 109.47237 * 174.26957 * 3 2 1 8 8 O 1.21284 * 120.00129 * 115.00142 * 7 3 2 9 9 N 1.34779 * 119.99949 * 294.99575 * 7 3 2 10 10 C 1.47848 * 134.36508 * 179.97438 * 9 7 3 11 11 C 1.52566 * 85.66219 * 156.39827 * 10 9 7 12 12 C 1.47853 * 134.35810 * 0.03594 * 9 7 3 13 13 C 1.53921 * 115.92230 * 264.97741 * 11 10 9 14 14 C 1.55146 * 101.43353 * 264.39847 * 13 11 10 15 15 N 1.47545 * 105.00973 * 324.37845 * 14 13 11 16 16 C 1.36935 * 125.65955 * 203.91838 * 15 14 13 17 17 H 1.08005 * 120.00090 * 180.02562 * 16 15 14 18 18 C 1.38809 * 120.00296 * 359.97438 * 16 15 14 19 19 N 1.31620 * 119.99750 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00170 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47367 * 60.00057 * 20 18 16 22 22 H 1.48503 * 109.47110 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47022 * 300.00109 * 20 18 16 24 24 C 1.47360 * 108.67897 * 23.91668 * 15 14 13 25 25 H 1.08997 * 109.47312 * 61.13860 * 1 2 3 26 26 H 1.09007 * 109.46924 * 181.13816 * 1 2 3 27 27 H 1.08999 * 109.47304 * 301.13653 * 1 2 3 28 28 H 1.08999 * 109.47171 * 240.00278 * 2 1 3 29 29 H 1.08999 * 109.47167 * 119.99655 * 2 1 3 30 30 H 1.08997 * 109.47546 * 185.33335 * 6 5 3 31 31 H 1.08994 * 109.47563 * 305.34256 * 6 5 3 32 32 H 1.09008 * 109.46484 * 65.33642 * 6 5 3 33 33 H 1.08999 * 113.84338 * 42.21477 * 10 9 7 34 34 H 1.09001 * 113.84049 * 270.57960 * 10 9 7 35 35 H 1.09002 * 113.84662 * 89.42136 * 12 9 7 36 36 H 1.08998 * 113.84685 * 317.78188 * 12 9 7 37 37 H 1.09005 * 111.00993 * 146.36443 * 13 11 10 38 38 H 1.09001 * 111.07646 * 22.46202 * 13 11 10 39 39 H 1.09003 * 110.33606 * 205.49804 * 14 13 11 40 40 H 1.08997 * 110.42587 * 83.30345 * 14 13 11 41 41 H 0.97005 * 119.99880 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.98335 * 117.31734 * 24 15 14 43 43 H 1.09005 * 109.98540 * 238.57303 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5952 1.9852 0.8341 5 8 1.6767 2.0762 -1.2282 6 6 0.8776 3.2493 -1.0629 7 6 3.5402 1.4449 0.1419 8 8 4.2343 1.8579 -0.7630 9 7 4.1108 0.9883 1.2743 10 6 5.5051 0.8463 1.7449 11 6 4.9127 0.8880 3.1503 12 6 3.5915 0.4287 2.5405 13 6 4.8969 2.2674 3.8331 14 6 6.1990 2.2089 4.6747 15 7 6.3027 0.8065 5.1212 16 6 6.9879 0.3681 6.2228 17 1 7.0036 -0.6842 6.4655 18 6 7.6633 1.2759 7.0268 19 7 7.6446 2.5582 6.7307 20 14 8.5987 0.6777 8.5291 21 1 9.6517 -0.2806 8.1074 22 1 9.2278 1.8355 9.2139 23 1 7.6595 0.0028 9.4606 24 6 5.5465 -0.0440 4.1851 25 1 -0.3634 0.4960 -0.9000 26 1 -0.3633 -1.0275 0.0204 27 1 -0.3634 0.5314 0.8796 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.5653 3.6170 -2.0404 31 1 -0.0026 3.0085 -0.4670 32 1 1.4610 4.0176 -0.5552 33 1 6.1391 1.7009 1.5085 34 1 5.9619 -0.1093 1.4876 35 1 3.4662 -0.6540 2.5252 36 1 2.7200 0.9547 2.9301 37 1 4.0216 2.3763 4.4736 38 1 4.9425 3.0698 3.0969 39 1 6.1249 2.8755 5.5340 40 1 7.0601 2.4759 4.0621 41 1 8.1163 3.1927 7.2929 42 1 6.2197 -0.7453 3.6921 43 1 4.7693 -0.5887 4.7214 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072533796.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:12 Heat of formation + Delta-G solvation = -17.068311 kcal Electronic energy + Delta-G solvation = -23030.327142 eV Core-core repulsion = 19691.919795 eV Total energy + Delta-G solvation = -3338.407347 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.69223 -39.03844 -37.26437 -35.61683 -33.74136 -32.16740 -29.76962 -28.84960 -27.96589 -26.58320 -25.94937 -25.10194 -23.59433 -22.09373 -20.40209 -19.38343 -18.38442 -17.35805 -16.93890 -16.73310 -15.87575 -15.58357 -15.22008 -14.85999 -14.53680 -14.30151 -13.85926 -13.76009 -13.51067 -13.26295 -12.76571 -12.48031 -12.25239 -12.16864 -11.92196 -11.75164 -11.71227 -11.54394 -11.20592 -11.06956 -10.99184 -10.79131 -10.50225 -10.31647 -10.12941 -9.97811 -9.89388 -9.65016 -9.21469 -8.67956 -8.54504 -6.87723 -5.68140 -3.10130 2.60336 2.76728 3.38853 3.43309 3.44615 3.62527 4.30842 4.45008 4.61645 4.62304 4.64584 4.94065 5.00854 5.05453 5.15026 5.19640 5.22671 5.43582 5.44722 5.47807 5.49646 5.50806 5.60888 5.66861 5.77361 5.82589 5.84358 5.90554 5.96717 6.14791 6.23637 6.46570 6.53472 6.65618 6.70458 6.85435 7.47651 7.58490 7.78770 7.82134 8.24545 8.32135 9.18462 9.79279 10.43869 11.35760 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036697 B = 0.003519 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.829735 B = 7955.113532 C = 8170.795577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.079 3.921 4 H 0.087 0.913 5 O -0.358 6.358 6 C 0.028 3.972 7 C 0.520 3.480 8 O -0.530 6.530 9 N -0.639 5.639 10 C 0.127 3.873 11 C -0.102 4.102 12 C 0.112 3.888 13 C -0.120 4.120 14 C 0.154 3.846 15 N -0.604 5.604 16 C -0.225 4.225 17 H 0.077 0.923 18 C -0.010 4.010 19 N -0.922 5.922 20 Si 0.915 3.085 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.151 3.849 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.107 0.893 40 H 0.013 0.987 41 H 0.253 0.747 42 H 0.026 0.974 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.117 -2.782 -10.604 18.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.018 3.982 4 H 0.105 0.895 5 O -0.275 6.275 6 C -0.068 4.068 7 C 0.308 3.692 8 O -0.406 6.406 9 N -0.376 5.376 10 C 0.005 3.995 11 C -0.103 4.103 12 C -0.011 4.011 13 C -0.158 4.158 14 C 0.029 3.971 15 N -0.330 5.330 16 C -0.353 4.353 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.570 5.570 20 Si 0.745 3.255 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.025 3.975 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.124 0.876 40 H 0.031 0.969 41 H 0.064 0.936 42 H 0.044 0.956 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -14.652 -2.446 -11.307 18.669 hybrid contribution 0.442 -0.198 0.951 1.067 sum -14.211 -2.644 -10.356 17.781 Atomic orbital electron populations 1.21739 0.94621 1.02202 1.02099 1.21778 0.97069 0.94035 1.03654 1.21996 0.91628 0.95861 0.88765 0.89517 1.87998 1.70818 1.41263 1.27431 1.22924 0.93791 0.87337 1.02783 1.20604 0.90291 0.77884 0.80433 1.90703 1.64398 1.46898 1.38610 1.50216 1.10123 1.62189 1.15099 1.23070 0.84091 1.02156 0.90154 1.22484 0.94296 0.99424 0.94092 1.23189 0.98263 0.98941 0.80692 1.22712 1.01785 0.92871 0.98443 1.21978 0.90170 0.87733 0.97210 1.44570 1.59002 1.02323 1.27105 1.19024 1.23624 0.92810 0.99819 0.90475 1.24786 1.00762 0.95503 0.99510 1.69784 1.47042 1.00615 1.39604 0.86151 0.79604 0.77286 0.82429 1.21207 1.21589 1.21157 1.20989 0.94073 0.92536 0.89912 0.92089 0.92093 0.92698 0.90510 0.90144 0.89281 0.93801 0.93841 0.89913 0.89681 0.89442 0.90038 0.91581 0.92243 0.87567 0.96878 0.93646 0.95595 0.95158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.80 37.16 0.36 -0.76 16 2 C -0.13 -1.23 5.59 -26.73 -0.15 -1.38 16 3 C 0.08 0.94 2.43 -27.89 -0.07 0.87 16 4 H 0.09 0.87 7.60 -51.93 -0.39 0.48 16 5 O -0.36 -4.67 9.47 -55.09 -0.52 -5.19 16 6 C 0.03 0.26 10.71 101.05 1.08 1.34 16 7 C 0.52 8.15 7.41 -10.98 -0.08 8.06 16 8 O -0.53 -10.65 17.23 -14.31 -0.25 -10.90 16 9 N -0.64 -9.18 3.58 -185.63 -0.67 -9.84 16 10 C 0.13 1.97 8.08 -3.53 -0.03 1.95 16 11 C -0.10 -1.61 0.98 -154.66 -0.15 -1.76 16 12 C 0.11 1.35 6.55 -3.51 -0.02 1.33 16 13 C -0.12 -2.14 6.42 -25.12 -0.16 -2.30 16 14 C 0.15 3.59 5.90 -2.33 -0.01 3.58 16 15 N -0.60 -14.75 3.41 -170.36 -0.58 -15.33 16 16 C -0.22 -6.05 10.28 -15.06 -0.15 -6.21 16 17 H 0.08 2.00 7.83 -52.48 -0.41 1.58 16 18 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 19 N -0.92 -26.34 10.09 55.49 0.56 -25.78 16 20 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.15 2.87 6.75 -3.56 -0.02 2.85 16 25 H 0.06 0.48 7.87 -51.93 -0.41 0.07 16 26 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.70 6.48 -51.93 -0.34 0.36 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.04 0.31 8.12 -51.93 -0.42 -0.11 16 32 H 0.04 0.41 8.14 -51.92 -0.42 -0.01 16 33 H 0.08 1.40 8.12 -51.93 -0.42 0.98 16 34 H 0.09 1.23 8.00 -51.93 -0.42 0.81 16 35 H 0.09 0.89 7.97 -51.93 -0.41 0.47 16 36 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.06 1.02 8.06 -51.93 -0.42 0.60 16 39 H 0.11 2.81 5.89 -51.93 -0.31 2.51 16 40 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.03 0.49 7.86 -51.93 -0.41 0.08 16 43 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 LS Contribution 346.34 15.07 5.22 5.22 Total: -1.00 -32.67 346.34 -8.05 -40.73 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -7.29 Total: -2.69 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 0.50 Total: 7.21 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.69 Total: -50.95 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.77 Total: -16.09 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.67 -8.05 -40.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072533796.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.660 kcal (2) G-P(sol) polarization free energy of solvation -32.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds