Wall clock time and date at job start Tue Mar 31 2020 05:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47537 * 2 1 4 4 C 1.50697 * 109.47696 * 180.02562 * 3 2 1 5 5 O 1.21287 * 119.99506 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00246 * 179.97438 * 4 3 2 7 7 C 1.46980 * 120.72227 * 0.02562 * 6 4 3 8 8 C 1.53158 * 108.44315 * 125.43202 * 7 6 4 9 9 C 1.52504 * 109.80364 * 54.51543 * 8 7 6 10 10 H 1.09005 * 108.39882 * 180.67750 * 9 8 7 11 11 O 1.42697 * 110.62706 * 61.31410 * 9 8 7 12 12 C 1.43071 * 113.86870 * 174.63899 * 11 9 8 13 13 C 1.53231 * 109.44855 * 61.64958 * 12 11 9 14 14 N 1.47176 * 108.69633 * 308.42078 * 13 12 11 15 15 C 1.36936 * 121.21626 * 230.95378 * 14 13 12 16 16 H 1.08003 * 119.99762 * 153.55218 * 15 14 13 17 17 C 1.38811 * 120.00558 * 333.55414 * 15 14 13 18 18 N 1.31622 * 119.99671 * 343.44569 * 17 15 14 19 19 Si 1.86799 * 120.00551 * 163.45118 * 17 15 14 20 20 H 1.48499 * 109.47303 * 89.99510 * 19 17 15 21 21 H 1.48498 * 109.47492 * 209.99770 * 19 17 15 22 22 H 1.48502 * 109.46965 * 329.99778 * 19 17 15 23 23 C 1.47589 * 117.55758 * 50.93403 * 14 13 12 24 24 H 1.09003 * 110.31129 * 187.71719 * 23 14 13 25 25 C 1.46801 * 120.72099 * 179.97438 * 6 4 3 26 26 H 1.08997 * 109.47330 * 60.00015 * 1 2 3 27 27 H 1.08998 * 109.46889 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46729 * 300.00152 * 1 2 3 29 29 H 1.09000 * 109.47493 * 239.99359 * 2 1 3 30 30 H 1.09006 * 109.47089 * 119.99865 * 2 1 3 31 31 H 1.09000 * 109.47252 * 59.99212 * 3 2 1 32 32 H 1.09006 * 109.46821 * 300.00030 * 3 2 1 33 33 H 1.08993 * 109.64028 * 245.11538 * 7 6 4 34 34 H 1.08998 * 109.64087 * 5.53910 * 7 6 4 35 35 H 1.09000 * 109.41774 * 294.41206 * 8 7 6 36 36 H 1.09004 * 109.41361 * 174.61914 * 8 7 6 37 37 H 1.09003 * 109.47719 * 181.63851 * 12 11 9 38 38 H 1.08998 * 109.47937 * 301.64898 * 12 11 9 39 39 H 1.08997 * 109.59589 * 68.17724 * 13 12 11 40 40 H 1.08997 * 109.60273 * 188.49522 * 13 12 11 41 41 H 0.96998 * 120.00120 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.52052 * 114.41929 * 25 6 4 43 43 H 1.09000 * 109.52264 * 354.22863 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1534 0.3920 -0.0006 6 7 4.2209 2.6096 -0.0013 7 6 3.5022 3.8917 -0.0008 8 6 4.0009 4.7263 1.1826 9 6 5.5188 4.8589 1.1181 10 1 5.8496 5.4453 1.9753 11 8 5.9147 5.5262 -0.0795 12 6 7.3176 5.7962 -0.1551 13 6 8.0934 4.4749 -0.1332 14 7 7.6358 3.6782 1.0166 15 6 8.5264 3.1416 1.9077 16 1 8.2206 2.9449 2.9246 17 6 9.8222 2.8506 1.5040 18 7 10.1111 2.7760 0.2221 19 14 11.1562 2.5647 2.7801 20 1 11.2061 1.1223 3.1294 21 1 12.4685 2.9859 2.2273 22 1 10.8543 3.3588 3.9981 23 6 6.1819 3.4792 1.1741 24 1 5.9673 2.9949 2.1267 25 6 5.6888 2.6281 -0.0013 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.6990 4.4224 -0.9322 34 1 2.4318 3.7116 0.0992 35 1 3.7192 4.2374 2.1152 36 1 3.5485 5.7173 1.1432 37 1 7.5356 6.3302 -1.0800 38 1 7.6165 6.4073 0.6964 39 1 7.9064 3.9259 -1.0560 40 1 9.1600 4.6786 -0.0386 41 1 11.0167 2.5731 -0.0601 42 1 6.0476 3.0568 -0.9370 43 1 6.0659 1.6107 0.1025 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074140629.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:14 Heat of formation + Delta-G solvation = -61.057115 kcal Electronic energy + Delta-G solvation = -23814.995336 eV Core-core repulsion = 20474.680491 eV Total energy + Delta-G solvation = -3340.314845 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.10277 -38.60922 -35.75104 -34.67930 -34.33382 -31.76605 -31.49172 -29.64682 -28.26181 -27.07227 -24.66943 -23.84884 -22.82234 -21.76244 -21.33387 -19.24380 -18.20855 -17.03546 -16.74017 -15.86349 -15.57069 -15.42141 -15.11660 -14.77429 -14.46062 -13.97417 -13.83219 -13.56280 -13.20458 -13.03057 -12.68536 -12.49334 -12.30897 -12.08686 -11.86529 -11.73711 -11.31532 -11.24832 -11.06733 -10.88592 -10.77458 -10.75318 -10.57888 -10.26838 -10.17215 -9.99149 -9.62697 -9.39488 -8.99920 -8.58945 -8.19563 -6.75527 -5.86242 -3.30148 2.96147 3.32300 3.35867 3.41559 3.43826 4.31791 4.41439 4.68093 4.84376 4.96100 4.99518 5.15469 5.28719 5.30778 5.40788 5.42896 5.45764 5.55956 5.62403 5.66694 5.77696 5.81284 5.93602 6.02332 6.05679 6.09398 6.11719 6.16068 6.28544 6.31479 6.36203 6.43613 6.70719 6.77214 6.99065 7.08761 7.48105 7.70600 7.81846 7.88356 8.30190 8.54614 9.08666 9.70324 10.27836 11.21439 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020410 B = 0.005114 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.570449 B = 5473.617129 C = 6340.213521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C -0.138 4.138 4 C 0.506 3.494 5 O -0.545 6.545 6 N -0.608 5.608 7 C 0.113 3.887 8 C -0.123 4.123 9 C 0.081 3.919 10 H 0.051 0.949 11 O -0.387 6.387 12 C 0.039 3.961 13 C 0.138 3.862 14 N -0.585 5.585 15 C -0.256 4.256 16 H 0.068 0.932 17 C 0.006 3.994 18 N -0.900 5.900 19 Si 0.905 3.095 20 H -0.286 1.286 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.135 3.865 24 H 0.074 0.926 25 C 0.106 3.894 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.041 0.959 39 H 0.028 0.972 40 H 0.096 0.904 41 H 0.256 0.744 42 H 0.067 0.933 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.308 3.909 -0.682 16.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C -0.179 4.179 4 C 0.294 3.706 5 O -0.423 6.423 6 N -0.342 5.342 7 C -0.011 4.011 8 C -0.162 4.162 9 C 0.021 3.979 10 H 0.069 0.931 11 O -0.307 6.307 12 C -0.038 4.038 13 C 0.012 3.988 14 N -0.307 5.307 15 C -0.385 4.385 16 H 0.086 0.914 17 C -0.193 4.193 18 N -0.544 5.544 19 Si 0.735 3.265 20 H -0.212 1.212 21 H -0.215 1.215 22 H -0.204 1.204 23 C 0.026 3.974 24 H 0.092 0.908 25 C -0.018 4.018 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.059 0.941 39 H 0.046 0.954 40 H 0.114 0.886 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.885 3.360 -0.892 16.261 hybrid contribution 1.061 -0.109 0.725 1.290 sum -14.824 3.251 -0.167 15.177 Atomic orbital electron populations 1.21791 0.95764 1.01725 1.01593 1.21284 0.94884 0.95072 1.03587 1.21727 0.92625 0.99697 1.03803 1.20697 0.90026 0.83495 0.76363 1.90698 1.70419 1.30988 1.50158 1.48337 1.07992 1.05365 1.72516 1.21633 0.95658 0.84348 0.99412 1.21808 0.95114 1.00444 0.98836 1.22213 0.93146 0.94701 0.87836 0.93104 1.87711 1.24617 1.78087 1.40263 1.23329 0.81122 0.99197 1.00193 1.21455 0.99419 0.88150 0.89753 1.44301 0.98964 1.58028 1.29420 1.19161 0.91543 1.37145 0.90672 0.91385 1.25058 0.99096 0.99287 0.95879 1.70019 1.19570 1.51490 1.13314 0.86253 0.81287 0.78131 0.80848 1.21233 1.21469 1.20434 1.21589 0.86277 0.92676 0.96860 0.90816 1.22271 0.76469 1.02623 1.00401 0.92812 0.92593 0.92793 0.91324 0.91268 0.89230 0.89310 0.90730 0.90320 0.90506 0.90464 0.90139 0.94110 0.95365 0.88639 0.93440 0.91467 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.88 16 2 C -0.11 -1.24 5.22 -26.73 -0.14 -1.38 16 3 C -0.14 -1.56 4.05 -27.89 -0.11 -1.67 16 4 C 0.51 8.40 7.70 -10.99 -0.08 8.32 16 5 O -0.54 -11.49 15.40 5.55 0.09 -11.41 16 6 N -0.61 -10.08 2.96 -172.80 -0.51 -10.60 16 7 C 0.11 1.43 6.18 -3.70 -0.02 1.41 16 8 C -0.12 -1.61 5.82 -26.90 -0.16 -1.77 16 9 C 0.08 1.41 2.72 -26.89 -0.07 1.34 16 10 H 0.05 0.92 8.13 -51.93 -0.42 0.50 16 11 O -0.39 -7.16 9.59 -35.23 -0.34 -7.50 16 12 C 0.04 0.75 6.98 37.28 0.26 1.01 16 13 C 0.14 3.22 4.93 -3.55 -0.02 3.20 16 14 N -0.58 -14.40 2.71 -163.90 -0.44 -14.84 16 15 C -0.26 -6.95 9.69 -15.06 -0.15 -7.10 16 16 H 0.07 1.82 7.88 -52.48 -0.41 1.41 16 17 C 0.01 0.16 4.96 -17.43 -0.09 0.08 16 18 N -0.90 -25.76 11.14 55.49 0.62 -25.14 16 19 Si 0.91 21.56 29.59 -169.99 -5.03 16.53 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C 0.13 2.82 3.02 -67.10 -0.20 2.61 16 24 H 0.07 1.59 7.99 -51.93 -0.42 1.18 16 25 C 0.11 2.20 5.62 -3.74 -0.02 2.18 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 30 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 31 H 0.09 0.83 7.72 -51.93 -0.40 0.43 16 32 H 0.09 0.83 7.93 -51.93 -0.41 0.42 16 33 H 0.07 0.99 7.95 -51.93 -0.41 0.58 16 34 H 0.08 0.73 5.94 -51.93 -0.31 0.42 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.71 7.17 -51.93 -0.37 0.33 16 40 H 0.10 2.46 6.14 -51.93 -0.32 2.14 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.07 1.49 6.56 -51.93 -0.34 1.15 16 43 H 0.09 2.15 7.00 -51.93 -0.36 1.78 16 LS Contribution 331.43 15.07 4.99 4.99 Total: -1.00 -31.35 331.43 -8.18 -39.52 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -7.12 Total: 1.09 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -0.44 Total: 7.34 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.34 Total: -50.58 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.25 Total: -18.91 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.35 -8.18 -39.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074140629.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.532 kcal (2) G-P(sol) polarization free energy of solvation -31.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds