Wall clock time and date at job start Tue Mar 31 2020 05:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47537 * 2 1 4 4 C 1.50697 * 109.47696 * 180.02562 * 3 2 1 5 5 O 1.21287 * 119.99506 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00246 * 179.97438 * 4 3 2 7 7 C 1.46980 * 120.72227 * 0.02562 * 6 4 3 8 8 C 1.53158 * 108.44315 * 125.43202 * 7 6 4 9 9 C 1.52504 * 109.80364 * 54.51543 * 8 7 6 10 10 H 1.09005 * 108.39882 * 180.67750 * 9 8 7 11 11 O 1.42697 * 110.62706 * 61.31410 * 9 8 7 12 12 C 1.43071 * 113.86870 * 174.63899 * 11 9 8 13 13 C 1.53231 * 109.44855 * 61.64958 * 12 11 9 14 14 N 1.47176 * 108.69633 * 308.42078 * 13 12 11 15 15 C 1.36936 * 121.21626 * 230.95378 * 14 13 12 16 16 H 1.08003 * 119.99762 * 153.55218 * 15 14 13 17 17 C 1.38811 * 120.00558 * 333.55414 * 15 14 13 18 18 N 1.31622 * 119.99671 * 343.44569 * 17 15 14 19 19 Si 1.86799 * 120.00551 * 163.45118 * 17 15 14 20 20 H 1.48499 * 109.47303 * 89.99510 * 19 17 15 21 21 H 1.48498 * 109.47492 * 209.99770 * 19 17 15 22 22 H 1.48502 * 109.46965 * 329.99778 * 19 17 15 23 23 C 1.47589 * 117.55758 * 50.93403 * 14 13 12 24 24 H 1.09003 * 110.31129 * 187.71719 * 23 14 13 25 25 C 1.46801 * 120.72099 * 179.97438 * 6 4 3 26 26 H 1.08997 * 109.47330 * 60.00015 * 1 2 3 27 27 H 1.08998 * 109.46889 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46729 * 300.00152 * 1 2 3 29 29 H 1.09000 * 109.47493 * 239.99359 * 2 1 3 30 30 H 1.09006 * 109.47089 * 119.99865 * 2 1 3 31 31 H 1.09000 * 109.47252 * 59.99212 * 3 2 1 32 32 H 1.09006 * 109.46821 * 300.00030 * 3 2 1 33 33 H 1.08993 * 109.64028 * 245.11538 * 7 6 4 34 34 H 1.08998 * 109.64087 * 5.53910 * 7 6 4 35 35 H 1.09000 * 109.41774 * 294.41206 * 8 7 6 36 36 H 1.09004 * 109.41361 * 174.61914 * 8 7 6 37 37 H 1.09003 * 109.47719 * 181.63851 * 12 11 9 38 38 H 1.08998 * 109.47937 * 301.64898 * 12 11 9 39 39 H 1.08997 * 109.59589 * 68.17724 * 13 12 11 40 40 H 1.08997 * 109.60273 * 188.49522 * 13 12 11 41 41 H 0.96998 * 120.00120 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.52052 * 114.41929 * 25 6 4 43 43 H 1.09000 * 109.52264 * 354.22863 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1534 0.3920 -0.0006 6 7 4.2209 2.6096 -0.0013 7 6 3.5022 3.8917 -0.0008 8 6 4.0009 4.7263 1.1826 9 6 5.5188 4.8589 1.1181 10 1 5.8496 5.4453 1.9753 11 8 5.9147 5.5262 -0.0795 12 6 7.3176 5.7962 -0.1551 13 6 8.0934 4.4749 -0.1332 14 7 7.6358 3.6782 1.0166 15 6 8.5264 3.1416 1.9077 16 1 8.2206 2.9449 2.9246 17 6 9.8222 2.8506 1.5040 18 7 10.1111 2.7760 0.2221 19 14 11.1562 2.5647 2.7801 20 1 11.2061 1.1223 3.1294 21 1 12.4685 2.9859 2.2273 22 1 10.8543 3.3588 3.9981 23 6 6.1819 3.4792 1.1741 24 1 5.9673 2.9949 2.1267 25 6 5.6888 2.6281 -0.0013 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.6990 4.4224 -0.9322 34 1 2.4318 3.7116 0.0992 35 1 3.7192 4.2374 2.1152 36 1 3.5485 5.7173 1.1432 37 1 7.5356 6.3302 -1.0800 38 1 7.6165 6.4073 0.6964 39 1 7.9064 3.9259 -1.0560 40 1 9.1600 4.6786 -0.0386 41 1 11.0167 2.5731 -0.0601 42 1 6.0476 3.0568 -0.9370 43 1 6.0659 1.6107 0.1025 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074140629.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:13 Heat of formation + Delta-G solvation = -81.968227 kcal Electronic energy + Delta-G solvation = -23815.902110 eV Core-core repulsion = 20474.680491 eV Total energy + Delta-G solvation = -3341.221619 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.51957 -40.08891 -37.16214 -36.46711 -35.30899 -33.50544 -33.04530 -31.17368 -29.64482 -28.53355 -25.98527 -25.62686 -24.43357 -22.96351 -22.58367 -20.70816 -19.60491 -18.91278 -18.12203 -17.15831 -17.03699 -16.89529 -16.79587 -16.19376 -16.02337 -15.51905 -15.14895 -14.88905 -14.76408 -14.35507 -14.07576 -13.90377 -13.65789 -13.39606 -13.11057 -12.88527 -12.81841 -12.67469 -12.57061 -12.45024 -12.23958 -12.14096 -11.94188 -11.85935 -11.64741 -11.59358 -11.21093 -10.81143 -10.74055 -10.52557 -9.67385 -8.72609 -7.95117 -5.42709 1.42533 1.43143 1.53301 1.67434 2.03371 2.44959 2.89204 3.19795 3.44119 3.59254 3.88251 3.98000 4.05687 4.12987 4.16678 4.21165 4.26758 4.41823 4.51822 4.53066 4.62681 4.66746 4.73752 4.75092 4.83446 4.87190 4.89391 4.96426 4.98959 5.06959 5.22887 5.27329 5.30915 5.31679 5.46735 5.51136 5.56753 5.58960 6.24169 6.34453 6.53900 7.01933 7.23909 7.69032 8.23379 9.09915 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020410 B = 0.005114 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.570449 B = 5473.617129 C = 6340.213521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C -0.125 4.125 4 C 0.496 3.504 5 O -0.603 6.603 6 N -0.608 5.608 7 C 0.109 3.891 8 C -0.116 4.116 9 C 0.084 3.916 10 H 0.049 0.951 11 O -0.382 6.382 12 C 0.052 3.948 13 C 0.145 3.855 14 N -0.604 5.604 15 C -0.269 4.269 16 H 0.066 0.934 17 C -0.046 4.046 18 N -0.932 5.932 19 Si 0.970 3.030 20 H -0.289 1.289 21 H -0.288 1.288 22 H -0.267 1.267 23 C 0.131 3.869 24 H 0.061 0.939 25 C 0.124 3.876 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.074 0.926 34 H 0.130 0.870 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.047 0.953 39 H -0.001 1.001 40 H 0.067 0.933 41 H 0.252 0.748 42 H 0.046 0.954 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.647 6.024 0.095 20.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C -0.165 4.165 4 C 0.287 3.713 5 O -0.485 6.485 6 N -0.341 5.341 7 C -0.013 4.013 8 C -0.155 4.155 9 C 0.025 3.975 10 H 0.067 0.933 11 O -0.301 6.301 12 C -0.025 4.025 13 C 0.020 3.980 14 N -0.327 5.327 15 C -0.399 4.399 16 H 0.084 0.916 17 C -0.241 4.241 18 N -0.578 5.578 19 Si 0.798 3.202 20 H -0.216 1.216 21 H -0.214 1.214 22 H -0.192 1.192 23 C 0.024 3.976 24 H 0.079 0.921 25 C -0.001 4.001 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.092 0.908 34 H 0.147 0.853 35 H 0.110 0.890 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.065 0.935 39 H 0.017 0.983 40 H 0.085 0.915 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -19.287 5.518 -0.108 20.061 hybrid contribution 2.072 -0.833 0.469 2.282 sum -17.214 4.685 0.361 17.844 Atomic orbital electron populations 1.21733 0.92834 1.02408 1.03072 1.21282 0.97266 0.94896 1.01571 1.21807 0.87496 1.00314 1.06841 1.21852 0.92422 0.82358 0.74660 1.90678 1.72061 1.33157 1.52595 1.48416 1.06012 1.07480 1.72181 1.22004 0.97881 0.82017 0.99353 1.21872 0.91132 1.02761 0.99697 1.22278 0.96225 0.91582 0.87449 0.93290 1.87729 1.23728 1.77777 1.40847 1.23151 0.80992 0.96464 1.01925 1.21286 0.98612 0.89990 0.88161 1.44543 1.00416 1.58486 1.29243 1.19470 0.92491 1.36728 0.91211 0.91615 1.25819 1.01075 0.99627 0.97622 1.70179 1.19597 1.52903 1.15071 0.85244 0.78461 0.77670 0.78863 1.21556 1.21366 1.19166 1.21746 0.84670 0.95230 0.95998 0.92079 1.21646 0.79926 0.99244 0.99308 0.91300 0.92492 0.91216 0.93526 0.93442 0.85755 0.86065 0.90766 0.85261 0.88959 0.86822 0.87345 0.93515 0.98296 0.91502 0.93886 0.93522 0.94467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.91 71.98 0.71 -1.17 16 2 C -0.11 -2.34 5.22 30.59 0.16 -2.18 16 3 C -0.13 -2.37 4.05 29.85 0.12 -2.25 16 4 C 0.50 16.15 7.70 87.66 0.67 16.83 16 5 O -0.60 -26.70 15.40 -3.05 -0.05 -26.75 16 6 N -0.61 -19.56 2.96 -819.02 -2.43 -21.99 16 7 C 0.11 2.30 6.18 86.34 0.53 2.83 16 8 C -0.12 -2.52 5.82 30.48 0.18 -2.34 16 9 C 0.08 2.78 2.72 30.49 0.08 2.87 16 10 H 0.05 1.67 8.13 -2.38 -0.02 1.65 16 11 O -0.38 -13.35 9.59 -148.98 -1.43 -14.77 16 12 C 0.05 1.96 6.98 72.06 0.50 2.46 16 13 C 0.14 7.05 4.93 86.33 0.43 7.48 16 14 N -0.60 -30.94 2.71 -672.46 -1.82 -32.76 16 15 C -0.27 -15.18 9.69 84.03 0.81 -14.37 16 16 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 17 C -0.05 -2.59 4.96 84.86 0.42 -2.16 16 18 N -0.93 -55.95 11.14 21.65 0.24 -55.71 16 19 Si 0.97 45.61 29.59 68.60 2.03 47.64 16 20 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 21 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 C 0.13 5.62 3.02 44.93 0.14 5.75 16 24 H 0.06 2.72 7.99 -2.39 -0.02 2.70 16 25 C 0.12 5.40 5.62 86.41 0.49 5.89 16 26 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 30 H 0.05 1.18 8.10 -2.38 -0.02 1.16 16 31 H 0.12 1.58 7.72 -2.39 -0.02 1.56 16 32 H 0.12 1.60 7.93 -2.38 -0.02 1.58 16 33 H 0.07 1.65 7.95 -2.39 -0.02 1.63 16 34 H 0.13 1.51 5.94 -2.39 -0.01 1.50 16 35 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.11 3.44 8.14 -2.39 -0.02 3.43 16 38 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.00 -0.06 7.17 -2.39 -0.02 -0.07 16 40 H 0.07 3.61 6.14 -2.39 -0.01 3.60 16 41 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 42 H 0.05 2.19 6.56 -2.39 -0.02 2.17 16 43 H 0.04 1.96 7.00 -2.39 -0.02 1.95 16 Total: -1.00 -75.44 331.43 2.77 -72.67 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 0.98 Total: 12.05 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: 5.25 Total: 19.64 kcal Atomic # 7 Polarization: -106.46 SS G_CDS: -4.01 Total: -110.47 kcal Atomic # 8 Polarization: -40.05 SS G_CDS: -1.48 Total: -41.52 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -75.44 2.77 -72.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074140629.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.301 kcal (2) G-P(sol) polarization free energy of solvation -75.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds