Wall clock time and date at job start Tue Mar 31 2020 05:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47378 * 2 1 4 4 C 1.50694 * 109.47055 * 179.97438 * 3 2 1 5 5 O 1.21280 * 120.00508 * 0.02562 * 4 3 2 6 6 N 1.34782 * 119.99900 * 179.97438 * 4 3 2 7 7 C 1.46987 * 120.72229 * 0.02562 * 6 4 3 8 8 C 1.53161 * 108.43977 * 234.52981 * 7 6 4 9 9 C 1.52509 * 109.79560 * 305.46871 * 8 7 6 10 10 H 1.08998 * 108.93437 * 179.65861 * 9 8 7 11 11 O 1.42698 * 110.62273 * 298.69252 * 9 8 7 12 12 C 1.43071 * 113.87841 * 185.34591 * 11 9 8 13 13 C 1.53228 * 109.44491 * 298.35109 * 12 11 9 14 14 N 1.47171 * 108.69328 * 51.59195 * 13 12 11 15 15 C 1.36942 * 121.22295 * 129.02764 * 14 13 12 16 16 H 1.07999 * 120.00035 * 206.18102 * 15 14 13 17 17 C 1.38810 * 119.99895 * 26.17906 * 15 14 13 18 18 N 1.31622 * 120.00141 * 16.91485 * 17 15 14 19 19 Si 1.86800 * 120.00010 * 196.91505 * 17 15 14 20 20 H 1.48496 * 109.47287 * 90.00310 * 19 17 15 21 21 H 1.48505 * 109.47006 * 210.00029 * 19 17 15 22 22 H 1.48498 * 109.47318 * 329.99832 * 19 17 15 23 23 C 1.47595 * 117.55520 * 309.04564 * 14 13 12 24 24 H 1.09001 * 111.16516 * 172.79087 * 23 14 13 25 25 C 1.46792 * 120.72507 * 179.97438 * 6 4 3 26 26 H 1.09000 * 109.47384 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46848 * 299.99782 * 1 2 3 28 28 H 1.09002 * 109.46787 * 59.99787 * 1 2 3 29 29 H 1.09000 * 109.46848 * 240.00218 * 2 1 3 30 30 H 1.09002 * 109.46787 * 120.00213 * 2 1 3 31 31 H 1.09000 * 109.46953 * 60.00283 * 3 2 1 32 32 H 1.08993 * 109.47351 * 300.00138 * 3 2 1 33 33 H 1.08996 * 109.64323 * 114.83992 * 7 6 4 34 34 H 1.09002 * 109.81651 * 354.30980 * 7 6 4 35 35 H 1.08996 * 109.41754 * 185.36970 * 8 7 6 36 36 H 1.08998 * 109.36313 * 65.52710 * 8 7 6 37 37 H 1.08994 * 109.47077 * 178.35657 * 12 11 9 38 38 H 1.09003 * 109.47804 * 58.34854 * 12 11 9 39 39 H 1.08991 * 109.59924 * 291.82603 * 13 12 11 40 40 H 1.09003 * 109.72889 * 171.42921 * 13 12 11 41 41 H 0.97004 * 120.00278 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.52093 * 245.64212 * 25 6 4 43 43 H 1.09009 * 109.51875 * 5.81980 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1534 0.3921 0.0006 6 7 4.2209 2.6096 0.0002 7 6 3.5022 3.8917 -0.0003 8 6 4.0007 4.7262 -1.1839 9 6 5.5187 4.8589 -1.1193 10 1 5.8586 5.4492 -1.9701 11 8 5.9143 5.5263 0.0783 12 6 7.3172 5.7963 0.1545 13 6 8.0929 4.4750 0.1331 14 7 7.6359 3.6784 -1.0169 15 6 8.5268 3.1419 -1.9078 16 1 8.2202 2.9412 -2.9237 17 6 9.8242 2.8562 -1.5051 18 7 10.1136 2.7792 -0.2234 19 14 11.1593 2.5808 -2.7823 20 1 11.8098 3.8759 -3.1055 21 1 12.1729 1.6386 -2.2434 22 1 10.5566 2.0087 -4.0130 23 6 6.1820 3.4792 -1.1750 24 1 5.9526 2.9873 -2.1203 25 6 5.6888 2.6281 0.0014 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9562 0.8900 32 1 1.6768 1.9563 -0.8899 33 1 3.6991 4.4225 0.9311 34 1 2.4314 3.7150 -0.1019 35 1 3.5484 5.7170 -1.1448 36 1 3.7193 4.2358 -2.1158 37 1 7.5347 6.3305 1.0793 38 1 7.6165 6.4073 -0.6971 39 1 7.9054 3.9261 1.0558 40 1 9.1599 4.6762 0.0376 41 1 11.0203 2.5799 0.0580 42 1 6.0468 3.0571 0.9372 43 1 6.0659 1.6105 -0.1016 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074140630.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:17 Heat of formation + Delta-G solvation = -61.076890 kcal Electronic energy + Delta-G solvation = -23814.888597 eV Core-core repulsion = 20474.572895 eV Total energy + Delta-G solvation = -3340.315702 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.10484 -38.61187 -35.75366 -34.67986 -34.33523 -31.76224 -31.49207 -29.64859 -28.26179 -27.07473 -24.66840 -23.84884 -22.82083 -21.76436 -21.33498 -19.24793 -18.21895 -17.03846 -16.74013 -15.86407 -15.56985 -15.41957 -15.12697 -14.77349 -14.46026 -13.97140 -13.83428 -13.56418 -13.20619 -13.03142 -12.68531 -12.49545 -12.30867 -12.08704 -11.86735 -11.73833 -11.31979 -11.24876 -11.06661 -10.90896 -10.77473 -10.74965 -10.58858 -10.23720 -10.17524 -9.99322 -9.62912 -9.39692 -8.99858 -8.59126 -8.19661 -6.76476 -5.86261 -3.30192 2.96001 3.31698 3.36359 3.41982 3.43393 4.31596 4.41244 4.67845 4.84316 4.96014 4.99440 5.15187 5.28662 5.30003 5.40643 5.42773 5.45424 5.55867 5.62296 5.66236 5.78312 5.80615 5.93547 6.02449 6.05824 6.09248 6.11649 6.15913 6.28379 6.31230 6.35778 6.43331 6.70759 6.77348 6.98971 7.08244 7.47939 7.70751 7.81685 7.88198 8.29913 8.54459 9.08505 9.70092 10.27444 11.21321 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020453 B = 0.005109 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.646214 B = 5479.007761 C = 6342.238690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C -0.138 4.138 4 C 0.506 3.494 5 O -0.545 6.545 6 N -0.608 5.608 7 C 0.113 3.887 8 C -0.123 4.123 9 C 0.081 3.919 10 H 0.051 0.949 11 O -0.388 6.388 12 C 0.040 3.960 13 C 0.137 3.863 14 N -0.584 5.584 15 C -0.256 4.256 16 H 0.069 0.931 17 C 0.006 3.994 18 N -0.900 5.900 19 Si 0.906 3.094 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.278 1.278 23 C 0.135 3.865 24 H 0.073 0.927 25 C 0.105 3.895 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.041 0.959 39 H 0.028 0.972 40 H 0.096 0.904 41 H 0.256 0.744 42 H 0.067 0.933 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.348 3.887 0.678 16.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C -0.179 4.179 4 C 0.294 3.706 5 O -0.423 6.423 6 N -0.342 5.342 7 C -0.011 4.011 8 C -0.162 4.162 9 C 0.021 3.979 10 H 0.069 0.931 11 O -0.308 6.308 12 C -0.038 4.038 13 C 0.012 3.988 14 N -0.307 5.307 15 C -0.385 4.385 16 H 0.087 0.913 17 C -0.193 4.193 18 N -0.544 5.544 19 Si 0.736 3.264 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.204 1.204 23 C 0.026 3.974 24 H 0.092 0.908 25 C -0.019 4.019 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.059 0.941 39 H 0.046 0.954 40 H 0.114 0.886 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.930 3.324 0.886 16.297 hybrid contribution 1.062 -0.085 -0.724 1.289 sum -14.868 3.238 0.161 15.217 Atomic orbital electron populations 1.21792 0.95764 1.01726 1.01592 1.21285 0.94886 0.95072 1.03585 1.21726 0.92621 0.99698 1.03805 1.20699 0.90028 0.83493 0.76361 1.90696 1.70411 1.30998 1.50150 1.48336 1.07991 1.05358 1.72526 1.21628 0.95678 0.84342 0.99405 1.21800 0.95064 1.00450 0.98852 1.22238 0.93147 0.94700 0.87819 0.93090 1.87709 1.24609 1.78042 1.40394 1.23323 0.81121 0.99175 1.00198 1.21469 0.99474 0.88149 0.89717 1.44293 0.98935 1.58040 1.29402 1.19194 0.91417 1.37122 0.90779 0.91302 1.25054 0.99074 0.99319 0.95898 1.70025 1.19455 1.51568 1.13341 0.86225 0.81684 0.77601 0.80876 1.21372 1.21640 1.20354 1.21580 0.86260 0.92658 0.96865 0.90835 1.22306 0.76461 1.02634 1.00451 0.92594 0.92812 0.92793 0.91268 0.91324 0.89308 0.89228 0.90728 0.90307 0.90447 0.90498 0.90133 0.94110 0.95358 0.88577 0.93435 0.91506 0.89366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.88 16 2 C -0.11 -1.24 5.22 -26.73 -0.14 -1.38 16 3 C -0.14 -1.56 4.05 -27.89 -0.11 -1.67 16 4 C 0.51 8.40 7.70 -10.99 -0.08 8.31 16 5 O -0.54 -11.49 15.40 5.56 0.09 -11.40 16 6 N -0.61 -10.08 2.96 -172.75 -0.51 -10.59 16 7 C 0.11 1.43 6.17 -3.69 -0.02 1.41 16 8 C -0.12 -1.61 5.82 -26.90 -0.16 -1.76 16 9 C 0.08 1.41 2.73 -26.88 -0.07 1.34 16 10 H 0.05 0.93 8.11 -51.93 -0.42 0.50 16 11 O -0.39 -7.17 9.59 -35.23 -0.34 -7.51 16 12 C 0.04 0.76 6.97 37.28 0.26 1.02 16 13 C 0.14 3.21 4.94 -3.56 -0.02 3.19 16 14 N -0.58 -14.38 2.71 -163.85 -0.44 -14.83 16 15 C -0.26 -6.95 9.71 -15.06 -0.15 -7.09 16 16 H 0.07 1.85 7.88 -52.49 -0.41 1.44 16 17 C 0.01 0.16 4.96 -17.43 -0.09 0.07 16 18 N -0.90 -25.76 11.14 55.49 0.62 -25.14 16 19 Si 0.91 21.60 29.59 -169.99 -5.03 16.57 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C 0.14 2.82 3.00 -67.06 -0.20 2.62 16 24 H 0.07 1.58 8.03 -51.93 -0.42 1.17 16 25 C 0.11 2.18 5.62 -3.70 -0.02 2.16 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.87 8.10 -51.93 -0.42 0.44 16 30 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 31 H 0.09 0.83 7.93 -51.93 -0.41 0.42 16 32 H 0.09 0.83 7.72 -51.93 -0.40 0.43 16 33 H 0.07 0.99 7.94 -51.93 -0.41 0.58 16 34 H 0.08 0.73 5.96 -51.93 -0.31 0.42 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.04 0.77 8.13 -51.93 -0.42 0.35 16 39 H 0.03 0.71 7.17 -51.93 -0.37 0.33 16 40 H 0.10 2.48 6.12 -51.93 -0.32 2.16 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.07 1.48 6.56 -51.93 -0.34 1.14 16 43 H 0.09 2.15 7.00 -51.92 -0.36 1.78 16 LS Contribution 331.44 15.07 4.99 4.99 Total: -1.00 -31.33 331.44 -8.17 -39.51 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -7.12 Total: 1.06 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -0.43 Total: 7.33 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: -0.34 Total: -50.56 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.25 Total: -18.91 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.33 -8.17 -39.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074140630.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.571 kcal (2) G-P(sol) polarization free energy of solvation -31.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds