Wall clock time and date at job start Tue Mar 31 2020 05:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47378 * 2 1 4 4 C 1.50694 * 109.47055 * 179.97438 * 3 2 1 5 5 O 1.21280 * 120.00508 * 0.02562 * 4 3 2 6 6 N 1.34782 * 119.99900 * 179.97438 * 4 3 2 7 7 C 1.46987 * 120.72229 * 0.02562 * 6 4 3 8 8 C 1.53161 * 108.43977 * 234.52981 * 7 6 4 9 9 C 1.52509 * 109.79560 * 305.46871 * 8 7 6 10 10 H 1.08998 * 108.93437 * 179.65861 * 9 8 7 11 11 O 1.42698 * 110.62273 * 298.69252 * 9 8 7 12 12 C 1.43071 * 113.87841 * 185.34591 * 11 9 8 13 13 C 1.53228 * 109.44491 * 298.35109 * 12 11 9 14 14 N 1.47171 * 108.69328 * 51.59195 * 13 12 11 15 15 C 1.36942 * 121.22295 * 129.02764 * 14 13 12 16 16 H 1.07999 * 120.00035 * 206.18102 * 15 14 13 17 17 C 1.38810 * 119.99895 * 26.17906 * 15 14 13 18 18 N 1.31622 * 120.00141 * 16.91485 * 17 15 14 19 19 Si 1.86800 * 120.00010 * 196.91505 * 17 15 14 20 20 H 1.48496 * 109.47287 * 90.00310 * 19 17 15 21 21 H 1.48505 * 109.47006 * 210.00029 * 19 17 15 22 22 H 1.48498 * 109.47318 * 329.99832 * 19 17 15 23 23 C 1.47595 * 117.55520 * 309.04564 * 14 13 12 24 24 H 1.09001 * 111.16516 * 172.79087 * 23 14 13 25 25 C 1.46792 * 120.72507 * 179.97438 * 6 4 3 26 26 H 1.09000 * 109.47384 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46848 * 299.99782 * 1 2 3 28 28 H 1.09002 * 109.46787 * 59.99787 * 1 2 3 29 29 H 1.09000 * 109.46848 * 240.00218 * 2 1 3 30 30 H 1.09002 * 109.46787 * 120.00213 * 2 1 3 31 31 H 1.09000 * 109.46953 * 60.00283 * 3 2 1 32 32 H 1.08993 * 109.47351 * 300.00138 * 3 2 1 33 33 H 1.08996 * 109.64323 * 114.83992 * 7 6 4 34 34 H 1.09002 * 109.81651 * 354.30980 * 7 6 4 35 35 H 1.08996 * 109.41754 * 185.36970 * 8 7 6 36 36 H 1.08998 * 109.36313 * 65.52710 * 8 7 6 37 37 H 1.08994 * 109.47077 * 178.35657 * 12 11 9 38 38 H 1.09003 * 109.47804 * 58.34854 * 12 11 9 39 39 H 1.08991 * 109.59924 * 291.82603 * 13 12 11 40 40 H 1.09003 * 109.72889 * 171.42921 * 13 12 11 41 41 H 0.97004 * 120.00278 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.52093 * 245.64212 * 25 6 4 43 43 H 1.09009 * 109.51875 * 5.81980 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1534 0.3921 0.0006 6 7 4.2209 2.6096 0.0002 7 6 3.5022 3.8917 -0.0003 8 6 4.0007 4.7262 -1.1839 9 6 5.5187 4.8589 -1.1193 10 1 5.8586 5.4492 -1.9701 11 8 5.9143 5.5263 0.0783 12 6 7.3172 5.7963 0.1545 13 6 8.0929 4.4750 0.1331 14 7 7.6359 3.6784 -1.0169 15 6 8.5268 3.1419 -1.9078 16 1 8.2202 2.9412 -2.9237 17 6 9.8242 2.8562 -1.5051 18 7 10.1136 2.7792 -0.2234 19 14 11.1593 2.5808 -2.7823 20 1 11.8098 3.8759 -3.1055 21 1 12.1729 1.6386 -2.2434 22 1 10.5566 2.0087 -4.0130 23 6 6.1820 3.4792 -1.1750 24 1 5.9526 2.9873 -2.1203 25 6 5.6888 2.6281 0.0014 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9562 0.8900 32 1 1.6768 1.9563 -0.8899 33 1 3.6991 4.4225 0.9311 34 1 2.4314 3.7150 -0.1019 35 1 3.5484 5.7170 -1.1448 36 1 3.7193 4.2358 -2.1158 37 1 7.5347 6.3305 1.0793 38 1 7.6165 6.4073 -0.6971 39 1 7.9054 3.9261 1.0558 40 1 9.1599 4.6762 0.0376 41 1 11.0203 2.5799 0.0580 42 1 6.0468 3.0571 0.9372 43 1 6.0659 1.6105 -0.1016 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074140630.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:17 Heat of formation + Delta-G solvation = -81.968430 kcal Electronic energy + Delta-G solvation = -23815.794522 eV Core-core repulsion = 20474.572895 eV Total energy + Delta-G solvation = -3341.221627 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.52078 -40.09069 -37.16399 -36.46789 -35.30946 -33.50377 -33.04163 -31.17497 -29.64470 -28.53517 -25.98451 -25.62642 -24.43057 -22.96529 -22.58322 -20.71260 -19.61363 -18.91367 -18.12193 -17.16680 -17.03492 -16.89475 -16.79708 -16.18952 -16.02643 -15.51554 -15.14914 -14.89043 -14.76469 -14.35350 -14.07617 -13.90563 -13.66115 -13.39436 -13.10176 -12.90059 -12.83884 -12.67460 -12.55922 -12.44019 -12.23987 -12.13386 -11.94449 -11.86028 -11.65236 -11.59391 -11.21386 -10.81079 -10.73843 -10.52677 -9.67442 -8.73430 -7.95175 -5.42757 1.42709 1.43205 1.52753 1.67401 2.03317 2.44764 2.89011 3.19154 3.43889 3.59125 3.88188 3.97747 4.05104 4.13201 4.16650 4.20638 4.27535 4.41711 4.51728 4.52916 4.62564 4.66757 4.73758 4.75092 4.83361 4.87019 4.89250 4.96530 4.99252 5.06787 5.22820 5.27338 5.30842 5.31674 5.46643 5.51068 5.56663 5.58960 6.23886 6.34291 6.53855 7.01689 7.23868 7.68801 8.23026 9.09727 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020453 B = 0.005109 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.646214 B = 5479.007761 C = 6342.238690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C -0.125 4.125 4 C 0.496 3.504 5 O -0.603 6.603 6 N -0.608 5.608 7 C 0.108 3.892 8 C -0.116 4.116 9 C 0.084 3.916 10 H 0.049 0.951 11 O -0.383 6.383 12 C 0.053 3.947 13 C 0.145 3.855 14 N -0.603 5.603 15 C -0.269 4.269 16 H 0.066 0.934 17 C -0.045 4.045 18 N -0.932 5.932 19 Si 0.971 3.029 20 H -0.278 1.278 21 H -0.295 1.295 22 H -0.271 1.271 23 C 0.131 3.869 24 H 0.061 0.939 25 C 0.124 3.876 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.074 0.926 34 H 0.130 0.870 35 H 0.114 0.886 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.046 0.954 39 H -0.001 1.001 40 H 0.067 0.933 41 H 0.252 0.748 42 H 0.046 0.954 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.695 5.991 -0.104 20.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C -0.165 4.165 4 C 0.287 3.713 5 O -0.485 6.485 6 N -0.341 5.341 7 C -0.013 4.013 8 C -0.154 4.154 9 C 0.025 3.975 10 H 0.067 0.933 11 O -0.302 6.302 12 C -0.025 4.025 13 C 0.019 3.981 14 N -0.326 5.326 15 C -0.399 4.399 16 H 0.084 0.916 17 C -0.241 4.241 18 N -0.577 5.577 19 Si 0.798 3.202 20 H -0.205 1.205 21 H -0.222 1.222 22 H -0.196 1.196 23 C 0.024 3.976 24 H 0.079 0.921 25 C -0.002 4.002 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.092 0.908 34 H 0.148 0.852 35 H 0.132 0.868 36 H 0.110 0.890 37 H 0.127 0.873 38 H 0.065 0.935 39 H 0.017 0.983 40 H 0.085 0.915 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -19.340 5.471 0.096 20.099 hybrid contribution 2.079 -0.805 -0.466 2.277 sum -17.261 4.666 -0.370 17.885 Atomic orbital electron populations 1.21734 0.92836 1.02408 1.03070 1.21282 0.97267 0.94897 1.01570 1.21805 0.87494 1.00314 1.06841 1.21853 0.92423 0.82357 0.74657 1.90675 1.72052 1.33166 1.52586 1.48414 1.06012 1.07473 1.72192 1.22000 0.97915 0.82008 0.99343 1.21867 0.91078 1.02767 0.99712 1.22307 0.96222 0.91572 0.87413 0.93304 1.87727 1.23715 1.77734 1.40982 1.23145 0.80995 0.96446 1.01924 1.21300 0.98651 0.89989 0.88131 1.44533 1.00389 1.58497 1.29224 1.19487 0.92363 1.36720 0.91285 0.91588 1.25811 1.01044 0.99655 0.97634 1.70183 1.19474 1.52989 1.15096 0.85220 0.78768 0.77509 0.78656 1.20471 1.22185 1.19615 1.21740 0.84653 0.95216 0.96024 0.92070 1.21680 0.79919 0.99258 0.99350 0.92492 0.91301 0.91216 0.93440 0.93526 0.86067 0.85753 0.90770 0.85233 0.86803 0.88951 0.87342 0.93525 0.98277 0.91455 0.93888 0.93565 0.94463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.91 71.98 0.71 -1.17 16 2 C -0.11 -2.33 5.22 30.59 0.16 -2.17 16 3 C -0.13 -2.37 4.05 29.85 0.12 -2.25 16 4 C 0.50 16.14 7.70 87.65 0.67 16.82 16 5 O -0.60 -26.68 15.40 -3.03 -0.05 -26.73 16 6 N -0.61 -19.55 2.96 -818.85 -2.42 -21.98 16 7 C 0.11 2.29 6.17 86.34 0.53 2.83 16 8 C -0.12 -2.51 5.82 30.49 0.18 -2.33 16 9 C 0.08 2.79 2.73 30.49 0.08 2.87 16 10 H 0.05 1.67 8.11 -2.39 -0.02 1.65 16 11 O -0.38 -13.37 9.59 -148.98 -1.43 -14.80 16 12 C 0.05 1.97 6.97 72.06 0.50 2.47 16 13 C 0.14 7.04 4.94 86.33 0.43 7.47 16 14 N -0.60 -30.91 2.71 -672.31 -1.82 -32.73 16 15 C -0.27 -15.15 9.71 84.03 0.82 -14.34 16 16 H 0.07 3.66 7.88 -2.91 -0.02 3.64 16 17 C -0.05 -2.58 4.96 84.86 0.42 -2.16 16 18 N -0.93 -55.95 11.14 21.65 0.24 -55.71 16 19 Si 0.97 45.66 29.59 68.60 2.03 47.69 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 23 C 0.13 5.62 3.00 44.96 0.14 5.75 16 24 H 0.06 2.72 8.03 -2.39 -0.02 2.70 16 25 C 0.12 5.36 5.62 86.44 0.49 5.85 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.05 1.18 8.10 -2.39 -0.02 1.16 16 30 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 31 H 0.12 1.60 7.93 -2.39 -0.02 1.58 16 32 H 0.12 1.58 7.72 -2.39 -0.02 1.56 16 33 H 0.07 1.65 7.94 -2.39 -0.02 1.63 16 34 H 0.13 1.51 5.96 -2.39 -0.01 1.49 16 35 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 38 H 0.05 1.71 8.13 -2.39 -0.02 1.69 16 39 H 0.00 -0.05 7.17 -2.39 -0.02 -0.06 16 40 H 0.07 3.64 6.12 -2.39 -0.01 3.63 16 41 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 42 H 0.05 2.17 6.56 -2.39 -0.02 2.15 16 43 H 0.04 1.96 7.00 -2.38 -0.02 1.95 16 Total: -1.00 -75.40 331.44 2.77 -72.63 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 0.98 Total: 11.99 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: 5.25 Total: 19.64 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -4.01 Total: -110.42 kcal Atomic # 8 Polarization: -40.05 SS G_CDS: -1.48 Total: -41.52 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -75.40 2.77 -72.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074140630.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.343 kcal (2) G-P(sol) polarization free energy of solvation -75.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds