Wall clock time and date at job start Tue Mar 31 2020 05:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47631 * 2 1 4 4 C 1.50704 * 109.47206 * 179.97438 * 3 2 1 5 5 O 1.21281 * 119.99755 * 0.02562 * 4 3 2 6 6 N 1.34769 * 119.99974 * 180.02562 * 4 3 2 7 7 C 1.46845 * 120.41299 * 359.97438 * 6 4 3 8 8 C 1.53360 * 109.24958 * 232.23035 * 7 6 4 9 9 C 1.52790 * 108.92699 * 306.09963 * 8 7 6 10 10 H 1.09002 * 109.33981 * 302.90963 * 9 8 7 11 11 O 1.42599 * 111.11679 * 182.60661 * 9 8 7 12 12 C 1.43141 * 113.63385 * 176.37837 * 11 9 8 13 13 C 1.53195 * 109.74071 * 61.68343 * 12 11 9 14 14 N 1.48201 * 108.89122 * 308.81535 * 13 12 11 15 15 C 1.36937 * 121.46559 * 230.30752 * 14 13 12 16 16 H 1.07997 * 119.99634 * 152.25308 * 15 14 13 17 17 C 1.38812 * 120.00225 * 332.26144 * 15 14 13 18 18 N 1.31621 * 119.99731 * 345.01282 * 17 15 14 19 19 Si 1.86803 * 120.00007 * 165.00919 * 17 15 14 20 20 H 1.48499 * 109.47094 * 90.00295 * 19 17 15 21 21 H 1.48500 * 109.46898 * 209.99996 * 19 17 15 22 22 H 1.48494 * 109.47189 * 329.99678 * 19 17 15 23 23 C 1.46875 * 117.22947 * 50.13570 * 14 13 12 24 24 H 1.09004 * 110.20818 * 68.13400 * 23 14 13 25 25 C 1.47134 * 120.40940 * 179.97438 * 6 4 3 26 26 H 1.09004 * 109.46691 * 300.00515 * 1 2 3 27 27 H 1.09008 * 109.46586 * 59.99428 * 1 2 3 28 28 H 1.08993 * 109.47378 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46691 * 239.99485 * 2 1 3 30 30 H 1.09008 * 109.46586 * 120.00572 * 2 1 3 31 31 H 1.09000 * 109.46842 * 59.99693 * 3 2 1 32 32 H 1.08996 * 109.47270 * 300.00093 * 3 2 1 33 33 H 1.08993 * 109.50596 * 112.29104 * 7 6 4 34 34 H 1.08999 * 109.53748 * 352.17885 * 7 6 4 35 35 H 1.08994 * 109.58268 * 65.96460 * 8 7 6 36 36 H 1.08999 * 109.57765 * 186.23765 * 8 7 6 37 37 H 1.08998 * 109.42833 * 181.76493 * 12 11 9 38 38 H 1.09002 * 109.42648 * 301.65615 * 12 11 9 39 39 H 1.08999 * 109.58181 * 68.59080 * 13 12 11 40 40 H 1.09003 * 109.58227 * 188.99983 * 13 12 11 41 41 H 0.97003 * 119.99704 * 180.02562 * 18 17 15 42 42 H 1.09007 * 109.72530 * 246.45538 * 25 6 4 43 43 H 1.08991 * 109.72538 * 7.07903 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5472 1.4423 0.0006 5 8 4.1535 0.3919 0.0006 6 7 4.2211 2.6094 0.0013 7 6 3.4962 3.8864 0.0008 8 6 4.0187 4.7640 -1.1432 9 6 5.5363 4.8890 -1.0185 10 1 5.7856 5.2979 -0.0393 11 8 6.0658 5.7468 -2.0272 12 6 7.4752 5.9678 -1.9107 13 6 8.2214 4.6380 -2.0574 14 7 7.6244 3.6480 -1.1301 15 6 8.4001 2.9094 -0.2768 16 1 7.9879 2.5522 0.6553 17 6 9.7163 2.6201 -0.6098 18 7 10.1345 2.7887 -1.8464 19 14 10.8938 1.9914 0.6970 20 1 10.8396 0.5080 0.7398 21 1 12.2752 2.4269 0.3693 22 1 10.5029 2.5395 2.0205 23 6 6.1641 3.4937 -1.1608 24 1 5.8525 3.0466 -2.1048 25 6 5.6924 2.6198 0.0025 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5140 0.8900 31 1 1.6768 1.9562 0.8900 32 1 1.6769 1.9563 -0.8899 33 1 3.6546 4.3952 0.9515 34 1 2.4313 3.7010 -0.1399 35 1 3.7674 4.3054 -2.0995 36 1 3.5645 5.7529 -1.0817 37 1 7.8004 6.6541 -2.6925 38 1 7.6949 6.4001 -0.9344 39 1 8.1294 4.2786 -3.0823 40 1 9.2736 4.7804 -1.8111 41 1 11.0542 2.5861 -2.0792 42 1 6.0567 3.0322 0.9435 43 1 6.0676 1.6043 -0.1238 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074140631.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:21 Heat of formation + Delta-G solvation = -60.946648 kcal Electronic energy + Delta-G solvation = -23697.128589 eV Core-core repulsion = 20356.818534 eV Total energy + Delta-G solvation = -3340.310055 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.13786 -38.58879 -36.09431 -34.71904 -34.36958 -31.80632 -31.37791 -29.95166 -28.25055 -26.84443 -24.95879 -23.92329 -22.34977 -21.77004 -21.03906 -19.69219 -18.72505 -17.04172 -16.79270 -15.91342 -15.67337 -15.35864 -15.07503 -14.80518 -14.34897 -13.99254 -13.79953 -13.60919 -13.15145 -13.02932 -12.88761 -12.63975 -12.54578 -12.08249 -11.85835 -11.78406 -11.31732 -11.25510 -10.99940 -10.92658 -10.83321 -10.78904 -10.58381 -10.26371 -10.23412 -9.98427 -9.62293 -9.49638 -8.99372 -8.54031 -8.32943 -6.72787 -5.83985 -3.29213 2.85958 3.18939 3.36173 3.42987 3.44192 4.23223 4.43082 4.59419 4.79231 4.89623 4.92830 5.15692 5.26538 5.31406 5.38068 5.38689 5.40511 5.50689 5.52499 5.64737 5.70720 5.74220 5.87705 5.93728 5.95590 6.07514 6.09273 6.14658 6.23982 6.26099 6.32226 6.46039 6.66297 6.72815 6.87888 7.12190 7.48687 7.65024 7.71848 7.87941 8.31477 8.43037 9.08637 9.72875 10.31475 11.24570 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017394 B = 0.005536 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.368053 B = 5056.565911 C = 6310.734312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.139 4.139 4 C 0.509 3.491 5 O -0.539 6.539 6 N -0.614 5.614 7 C 0.112 3.888 8 C -0.125 4.125 9 C 0.077 3.923 10 H 0.052 0.948 11 O -0.390 6.390 12 C 0.040 3.960 13 C 0.142 3.858 14 N -0.589 5.589 15 C -0.258 4.258 16 H 0.071 0.929 17 C 0.007 3.993 18 N -0.902 5.902 19 Si 0.903 3.097 20 H -0.285 1.285 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.138 3.862 24 H 0.035 0.965 25 C 0.123 3.877 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.041 0.959 39 H 0.029 0.971 40 H 0.095 0.905 41 H 0.255 0.745 42 H 0.071 0.929 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.446 3.721 3.283 17.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.179 4.179 4 C 0.297 3.703 5 O -0.416 6.416 6 N -0.348 5.348 7 C -0.011 4.011 8 C -0.164 4.164 9 C 0.017 3.983 10 H 0.070 0.930 11 O -0.309 6.309 12 C -0.038 4.038 13 C 0.017 3.983 14 N -0.314 5.314 15 C -0.387 4.387 16 H 0.089 0.911 17 C -0.192 4.192 18 N -0.545 5.545 19 Si 0.733 3.267 20 H -0.212 1.212 21 H -0.215 1.215 22 H -0.204 1.204 23 C 0.030 3.970 24 H 0.053 0.947 25 C 0.001 3.999 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.113 0.887 41 H 0.065 0.935 42 H 0.089 0.911 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.030 3.187 3.088 16.632 hybrid contribution 0.978 -0.250 0.667 1.210 sum -15.051 2.938 3.754 15.788 Atomic orbital electron populations 1.21793 0.95695 1.01786 1.01619 1.21292 0.94963 0.94955 1.03653 1.21742 0.92345 0.99892 1.03931 1.20709 0.90123 0.83361 0.76067 1.90709 1.70392 1.30901 1.49603 1.48327 1.07767 1.05565 1.73130 1.21684 0.96352 0.84294 0.98781 1.21848 0.95117 1.00105 0.99288 1.22477 0.92304 0.92387 0.91139 0.93044 1.87732 1.23314 1.67428 1.52417 1.23315 0.80822 0.99519 1.00126 1.21579 0.98143 0.85519 0.93103 1.44216 0.99012 1.43179 1.44945 1.19118 0.93473 1.28533 0.97565 0.91091 1.25077 0.99067 0.99280 0.95785 1.70014 1.16586 1.51882 1.16053 0.86283 0.80389 0.78850 0.81209 1.21177 1.21490 1.20396 1.21322 0.86940 0.92494 0.96256 0.94700 1.21741 0.76392 1.03066 0.98678 0.92805 0.92750 0.92546 0.91201 0.91275 0.89188 0.89055 0.91271 0.89498 0.90869 0.90297 0.90021 0.94110 0.95293 0.88738 0.93499 0.91124 0.88045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.84 16 2 C -0.11 -1.19 5.22 -26.73 -0.14 -1.33 16 3 C -0.14 -1.48 4.04 -27.88 -0.11 -1.59 16 4 C 0.51 8.09 7.69 -10.99 -0.08 8.01 16 5 O -0.54 -10.98 15.38 5.56 0.09 -10.89 16 6 N -0.61 -9.66 2.98 -172.71 -0.51 -10.18 16 7 C 0.11 1.30 6.32 -3.67 -0.02 1.28 16 8 C -0.12 -1.68 5.81 -26.65 -0.15 -1.84 16 9 C 0.08 1.39 2.49 -26.49 -0.07 1.32 16 10 H 0.05 0.95 8.13 -51.93 -0.42 0.52 16 11 O -0.39 -7.66 10.49 -35.23 -0.37 -8.03 16 12 C 0.04 0.78 6.96 37.26 0.26 1.04 16 13 C 0.14 3.39 5.45 -3.01 -0.02 3.38 16 14 N -0.59 -14.76 3.06 -163.53 -0.50 -15.26 16 15 C -0.26 -6.96 8.88 -15.06 -0.13 -7.09 16 16 H 0.07 1.87 6.28 -52.49 -0.33 1.54 16 17 C 0.01 0.19 5.00 -17.43 -0.09 0.11 16 18 N -0.90 -26.02 11.17 55.49 0.62 -25.41 16 19 Si 0.90 21.69 29.58 -169.99 -5.03 16.66 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.14 2.96 3.03 -67.41 -0.20 2.76 16 24 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 25 C 0.12 2.44 4.49 -3.72 -0.02 2.42 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 30 H 0.07 0.82 8.10 -51.92 -0.42 0.40 16 31 H 0.09 0.76 7.95 -51.93 -0.41 0.34 16 32 H 0.09 0.81 7.66 -51.93 -0.40 0.42 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.72 5.91 -51.93 -0.31 0.42 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.09 2.45 6.27 -51.93 -0.33 2.13 16 41 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.07 1.40 7.37 -51.93 -0.38 1.02 16 43 H 0.10 2.35 6.80 -51.93 -0.35 2.00 16 LS Contribution 331.58 15.07 5.00 5.00 Total: -1.00 -32.03 331.58 -8.26 -40.29 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -7.13 Total: 0.19 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -0.41 Total: 7.62 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: -0.40 Total: -50.84 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.28 Total: -18.92 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.03 -8.26 -40.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074140631.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.655 kcal (2) G-P(sol) polarization free energy of solvation -32.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds