Wall clock time and date at job start Tue Mar 31 2020 05:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47631 * 2 1 4 4 C 1.50704 * 109.47206 * 179.97438 * 3 2 1 5 5 O 1.21281 * 119.99755 * 0.02562 * 4 3 2 6 6 N 1.34769 * 119.99974 * 180.02562 * 4 3 2 7 7 C 1.46845 * 120.41299 * 359.97438 * 6 4 3 8 8 C 1.53360 * 109.24958 * 232.23035 * 7 6 4 9 9 C 1.52790 * 108.92699 * 306.09963 * 8 7 6 10 10 H 1.09002 * 109.33981 * 302.90963 * 9 8 7 11 11 O 1.42599 * 111.11679 * 182.60661 * 9 8 7 12 12 C 1.43141 * 113.63385 * 176.37837 * 11 9 8 13 13 C 1.53195 * 109.74071 * 61.68343 * 12 11 9 14 14 N 1.48201 * 108.89122 * 308.81535 * 13 12 11 15 15 C 1.36937 * 121.46559 * 230.30752 * 14 13 12 16 16 H 1.07997 * 119.99634 * 152.25308 * 15 14 13 17 17 C 1.38812 * 120.00225 * 332.26144 * 15 14 13 18 18 N 1.31621 * 119.99731 * 345.01282 * 17 15 14 19 19 Si 1.86803 * 120.00007 * 165.00919 * 17 15 14 20 20 H 1.48499 * 109.47094 * 90.00295 * 19 17 15 21 21 H 1.48500 * 109.46898 * 209.99996 * 19 17 15 22 22 H 1.48494 * 109.47189 * 329.99678 * 19 17 15 23 23 C 1.46875 * 117.22947 * 50.13570 * 14 13 12 24 24 H 1.09004 * 110.20818 * 68.13400 * 23 14 13 25 25 C 1.47134 * 120.40940 * 179.97438 * 6 4 3 26 26 H 1.09004 * 109.46691 * 300.00515 * 1 2 3 27 27 H 1.09008 * 109.46586 * 59.99428 * 1 2 3 28 28 H 1.08993 * 109.47378 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46691 * 239.99485 * 2 1 3 30 30 H 1.09008 * 109.46586 * 120.00572 * 2 1 3 31 31 H 1.09000 * 109.46842 * 59.99693 * 3 2 1 32 32 H 1.08996 * 109.47270 * 300.00093 * 3 2 1 33 33 H 1.08993 * 109.50596 * 112.29104 * 7 6 4 34 34 H 1.08999 * 109.53748 * 352.17885 * 7 6 4 35 35 H 1.08994 * 109.58268 * 65.96460 * 8 7 6 36 36 H 1.08999 * 109.57765 * 186.23765 * 8 7 6 37 37 H 1.08998 * 109.42833 * 181.76493 * 12 11 9 38 38 H 1.09002 * 109.42648 * 301.65615 * 12 11 9 39 39 H 1.08999 * 109.58181 * 68.59080 * 13 12 11 40 40 H 1.09003 * 109.58227 * 188.99983 * 13 12 11 41 41 H 0.97003 * 119.99704 * 180.02562 * 18 17 15 42 42 H 1.09007 * 109.72530 * 246.45538 * 25 6 4 43 43 H 1.08991 * 109.72538 * 7.07903 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5472 1.4423 0.0006 5 8 4.1535 0.3919 0.0006 6 7 4.2211 2.6094 0.0013 7 6 3.4962 3.8864 0.0008 8 6 4.0187 4.7640 -1.1432 9 6 5.5363 4.8890 -1.0185 10 1 5.7856 5.2979 -0.0393 11 8 6.0658 5.7468 -2.0272 12 6 7.4752 5.9678 -1.9107 13 6 8.2214 4.6380 -2.0574 14 7 7.6244 3.6480 -1.1301 15 6 8.4001 2.9094 -0.2768 16 1 7.9879 2.5522 0.6553 17 6 9.7163 2.6201 -0.6098 18 7 10.1345 2.7887 -1.8464 19 14 10.8938 1.9914 0.6970 20 1 10.8396 0.5080 0.7398 21 1 12.2752 2.4269 0.3693 22 1 10.5029 2.5395 2.0205 23 6 6.1641 3.4937 -1.1608 24 1 5.8525 3.0466 -2.1048 25 6 5.6924 2.6198 0.0025 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5140 0.8900 31 1 1.6768 1.9562 0.8900 32 1 1.6769 1.9563 -0.8899 33 1 3.6546 4.3952 0.9515 34 1 2.4313 3.7010 -0.1399 35 1 3.7674 4.3054 -2.0995 36 1 3.5645 5.7529 -1.0817 37 1 7.8004 6.6541 -2.6925 38 1 7.6949 6.4001 -0.9344 39 1 8.1294 4.2786 -3.0823 40 1 9.2736 4.7804 -1.8111 41 1 11.0542 2.5861 -2.0792 42 1 6.0567 3.0322 0.9435 43 1 6.0676 1.6043 -0.1238 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074140631.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:20 Heat of formation + Delta-G solvation = -82.924088 kcal Electronic energy + Delta-G solvation = -23698.081602 eV Core-core repulsion = 20356.818534 eV Total energy + Delta-G solvation = -3341.263068 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.49397 -40.08802 -37.47062 -36.52734 -35.31567 -33.49279 -32.97463 -31.48265 -29.49414 -28.42509 -26.45847 -25.46893 -23.80204 -23.03993 -22.29282 -21.39457 -19.92835 -18.70582 -18.29888 -17.20039 -17.08472 -16.85956 -16.68567 -16.26277 -15.81951 -15.57322 -15.25789 -14.92726 -14.69644 -14.60245 -14.15867 -13.89691 -13.71376 -13.35865 -13.05125 -12.84968 -12.82992 -12.76030 -12.57057 -12.39082 -12.34279 -12.09695 -11.96965 -11.88899 -11.71721 -11.59203 -11.26007 -10.80617 -10.77573 -10.54033 -9.68656 -8.76498 -7.94618 -5.43236 1.42067 1.43309 1.52547 1.63914 1.94844 2.44519 2.81819 3.20958 3.41797 3.56415 3.84063 3.93561 4.03476 4.08984 4.14472 4.17336 4.24933 4.39174 4.48584 4.50097 4.54293 4.63025 4.68093 4.75271 4.77382 4.83267 4.85800 4.94440 5.00561 5.10738 5.11656 5.27561 5.30414 5.31600 5.43320 5.49937 5.52362 5.59538 6.23025 6.31712 6.45210 7.00600 7.19727 7.68499 8.25068 9.12034 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017394 B = 0.005536 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.368053 B = 5056.565911 C = 6310.734312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C -0.127 4.127 4 C 0.499 3.501 5 O -0.598 6.598 6 N -0.614 5.614 7 C 0.109 3.891 8 C -0.117 4.117 9 C 0.080 3.920 10 H 0.056 0.944 11 O -0.392 6.392 12 C 0.053 3.947 13 C 0.146 3.854 14 N -0.608 5.608 15 C -0.263 4.263 16 H 0.073 0.927 17 C -0.047 4.047 18 N -0.935 5.935 19 Si 0.967 3.033 20 H -0.290 1.290 21 H -0.287 1.287 22 H -0.265 1.265 23 C 0.134 3.866 24 H 0.001 0.999 25 C 0.138 3.862 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.128 0.872 32 H 0.121 0.879 33 H 0.091 0.909 34 H 0.135 0.865 35 H 0.066 0.934 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.050 0.950 39 H -0.003 1.003 40 H 0.070 0.930 41 H 0.251 0.749 42 H 0.069 0.931 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.694 5.795 4.707 21.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C -0.166 4.166 4 C 0.290 3.710 5 O -0.479 6.479 6 N -0.347 5.347 7 C -0.012 4.012 8 C -0.156 4.156 9 C 0.021 3.979 10 H 0.074 0.926 11 O -0.311 6.311 12 C -0.025 4.025 13 C 0.020 3.980 14 N -0.333 5.333 15 C -0.392 4.392 16 H 0.090 0.910 17 C -0.243 4.243 18 N -0.581 5.581 19 Si 0.794 3.206 20 H -0.217 1.217 21 H -0.213 1.213 22 H -0.190 1.190 23 C 0.027 3.973 24 H 0.019 0.981 25 C 0.014 3.986 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.146 0.854 32 H 0.139 0.861 33 H 0.109 0.891 34 H 0.153 0.847 35 H 0.085 0.915 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.069 0.931 39 H 0.015 0.985 40 H 0.088 0.912 41 H 0.061 0.939 42 H 0.087 0.913 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.337 5.306 4.522 20.555 hybrid contribution 1.963 -0.952 0.179 2.189 sum -17.374 4.354 4.701 18.518 Atomic orbital electron populations 1.21737 0.92897 1.02394 1.03070 1.21288 0.97240 0.94927 1.01616 1.21828 0.87420 1.00362 1.06968 1.21844 0.92433 0.82316 0.74418 1.90688 1.71986 1.33079 1.52106 1.48443 1.05861 1.07668 1.72710 1.22104 0.98182 0.81799 0.99102 1.21904 0.91267 1.02535 0.99867 1.22585 0.95207 0.89146 0.90989 0.92621 1.87743 1.22815 1.67361 1.53178 1.23157 0.80565 0.96986 1.01754 1.21453 0.97711 0.87739 0.91074 1.44525 1.00675 1.43432 1.44660 1.19426 0.93884 1.27976 0.97931 0.90964 1.25845 1.00659 1.00179 0.97602 1.70171 1.16577 1.53557 1.17811 0.85295 0.78243 0.77714 0.79345 1.21735 1.21325 1.19002 1.21482 0.85218 0.95407 0.95228 0.98101 1.21214 0.79775 0.99845 0.97755 0.91083 0.91436 0.92542 0.93713 0.93167 0.85444 0.86085 0.89069 0.84698 0.91503 0.86619 0.87175 0.93126 0.98531 0.91218 0.93945 0.91272 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.91 71.98 0.71 -1.10 16 2 C -0.11 -2.25 5.22 30.59 0.16 -2.09 16 3 C -0.13 -2.24 4.04 29.85 0.12 -2.12 16 4 C 0.50 15.41 7.69 87.66 0.67 16.09 16 5 O -0.60 -25.41 15.38 -3.03 -0.05 -25.45 16 6 N -0.61 -18.44 2.98 -818.73 -2.44 -20.88 16 7 C 0.11 2.03 6.32 86.43 0.55 2.57 16 8 C -0.12 -2.69 5.81 30.65 0.18 -2.52 16 9 C 0.08 2.75 2.49 30.75 0.08 2.83 16 10 H 0.06 1.90 8.13 -2.39 -0.02 1.88 16 11 O -0.39 -14.70 10.49 -148.98 -1.56 -16.26 16 12 C 0.05 2.04 6.96 72.05 0.50 2.54 16 13 C 0.15 7.24 5.45 86.12 0.47 7.70 16 14 N -0.61 -31.65 3.06 -671.28 -2.06 -33.71 16 15 C -0.26 -14.71 8.88 84.03 0.75 -13.97 16 16 H 0.07 3.95 6.28 -2.91 -0.02 3.93 16 17 C -0.05 -2.70 5.00 84.86 0.42 -2.27 16 18 N -0.94 -56.49 11.17 21.65 0.24 -56.25 16 19 Si 0.97 45.91 29.58 68.60 2.03 47.94 16 20 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 21 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 23 C 0.13 5.90 3.03 45.13 0.14 6.03 16 24 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 25 C 0.14 5.62 4.49 86.24 0.39 6.01 16 26 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 27 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.04 1.10 8.10 -2.38 -0.02 1.08 16 30 H 0.05 1.17 8.10 -2.38 -0.02 1.15 16 31 H 0.13 1.39 7.95 -2.39 -0.02 1.37 16 32 H 0.12 1.51 7.66 -2.39 -0.02 1.49 16 33 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.14 1.30 5.91 -2.39 -0.01 1.29 16 35 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 38 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 40 H 0.07 3.78 6.27 -2.39 -0.01 3.77 16 41 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 42 H 0.07 2.80 7.37 -2.38 -0.02 2.78 16 43 H 0.05 2.74 6.80 -2.39 -0.02 2.72 16 Total: -1.00 -76.79 331.58 2.28 -74.51 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.98 Total: 10.39 kcal Atomic # 6 Polarization: 14.58 SS G_CDS: 5.13 Total: 19.72 kcal Atomic # 7 Polarization: -106.58 SS G_CDS: -4.26 Total: -110.84 kcal Atomic # 8 Polarization: -40.11 SS G_CDS: -1.61 Total: -41.72 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -76.79 2.28 -74.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074140631.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.414 kcal (2) G-P(sol) polarization free energy of solvation -76.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds