Wall clock time and date at job start Tue Mar 31 2020 05:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47309 * 2 1 4 4 C 1.50703 * 109.47316 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99773 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00211 * 179.97438 * 4 3 2 7 7 C 1.46836 * 120.40789 * 0.02562 * 6 4 3 8 8 C 1.53366 * 109.24433 * 127.74289 * 7 6 4 9 9 C 1.52787 * 108.81325 * 53.83740 * 8 7 6 10 10 H 1.08997 * 109.34097 * 56.66642 * 9 8 7 11 11 O 1.42603 * 111.11753 * 177.45304 * 9 8 7 12 12 C 1.43150 * 113.62659 * 183.64389 * 11 9 8 13 13 C 1.53184 * 109.73693 * 298.31387 * 12 11 9 14 14 N 1.47352 * 108.81365 * 51.20394 * 13 12 11 15 15 C 1.36931 * 121.30748 * 129.74063 * 14 13 12 16 16 H 1.07994 * 120.00177 * 206.96265 * 15 14 13 17 17 C 1.38812 * 119.99941 * 26.96131 * 15 14 13 18 18 N 1.31625 * 120.00140 * 14.43781 * 17 15 14 19 19 Si 1.86804 * 120.00128 * 194.43673 * 17 15 14 20 20 H 1.48501 * 109.47015 * 90.00209 * 19 17 15 21 21 H 1.48496 * 109.47128 * 210.00331 * 19 17 15 22 22 H 1.48500 * 109.46781 * 330.00203 * 19 17 15 23 23 C 1.46875 * 117.38833 * 309.76742 * 14 13 12 24 24 H 1.08997 * 109.65728 * 292.34331 * 23 14 13 25 25 C 1.47124 * 120.40964 * 179.72379 * 6 4 3 26 26 H 1.09001 * 109.46749 * 300.00061 * 1 2 3 27 27 H 1.08999 * 109.46686 * 59.99956 * 1 2 3 28 28 H 1.08995 * 109.47415 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46955 * 239.99442 * 2 1 3 30 30 H 1.08999 * 109.46686 * 120.00044 * 2 1 3 31 31 H 1.09000 * 109.46811 * 299.99917 * 3 2 1 32 32 H 1.09000 * 109.46835 * 59.99938 * 3 2 1 33 33 H 1.09000 * 109.50630 * 247.67212 * 7 6 4 34 34 H 1.09000 * 109.51169 * 7.81104 * 7 6 4 35 35 H 1.08996 * 109.58226 * 173.63905 * 8 7 6 36 36 H 1.09000 * 109.58098 * 294.03982 * 8 7 6 37 37 H 1.08996 * 109.42344 * 58.39544 * 12 11 9 38 38 H 1.08997 * 109.42688 * 178.28570 * 12 11 9 39 39 H 1.09002 * 109.58271 * 171.00119 * 13 12 11 40 40 H 1.09007 * 109.58273 * 291.40246 * 13 12 11 41 41 H 0.96996 * 119.99774 * 179.97438 * 18 17 15 42 42 H 1.09009 * 109.72369 * 352.89776 * 25 6 4 43 43 H 1.08998 * 109.72763 * 113.56450 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 8 4.1534 0.3921 0.0015 6 7 4.2210 2.6096 0.0002 7 6 3.4959 3.8865 -0.0003 8 6 4.0170 4.7641 1.1444 9 6 5.5349 4.8862 1.0200 10 1 5.7855 5.2870 0.0378 11 8 6.0659 5.7426 2.0291 12 6 7.4758 5.9612 1.9124 13 6 8.2195 4.6299 2.0583 14 7 7.6230 3.6487 1.1350 15 6 8.3996 2.9104 0.2824 16 1 7.9853 2.5443 -0.6453 17 6 9.7194 2.6324 0.6106 18 7 10.1455 2.8220 1.8415 19 14 10.8909 1.9892 -0.6946 20 1 11.5591 3.1324 -1.3666 21 1 11.9145 1.1226 -0.0572 22 1 10.1301 1.2013 -1.6974 23 6 6.1627 3.4940 1.1645 24 1 5.8599 3.0519 2.1136 25 6 5.6922 2.6201 0.0070 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.6557 4.3954 -0.9509 34 1 2.4310 3.7005 0.1394 35 1 3.5645 5.7537 1.0811 36 1 3.7646 4.3054 2.1004 37 1 7.6959 6.3944 0.9368 38 1 7.8025 6.6457 2.6951 39 1 9.2720 4.7705 1.8119 40 1 8.1272 4.2703 3.0832 41 1 11.0676 2.6274 2.0708 42 1 6.0667 1.6049 0.1386 43 1 6.0615 3.0301 -0.9330 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074140632.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:24 Heat of formation + Delta-G solvation = -60.786553 kcal Electronic energy + Delta-G solvation = -23706.505244 eV Core-core repulsion = 20366.202132 eV Total energy + Delta-G solvation = -3340.303112 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.15870 -38.61649 -36.10288 -34.76127 -34.37992 -31.82326 -31.38550 -29.97187 -28.24875 -26.85193 -24.97111 -23.92520 -22.36480 -21.77986 -21.03276 -19.69228 -18.72513 -17.04801 -16.80588 -15.91815 -15.67751 -15.36173 -15.08857 -14.81232 -14.34794 -13.99739 -13.80219 -13.60846 -13.15555 -13.04537 -12.88675 -12.64259 -12.54666 -12.08688 -11.86300 -11.78881 -11.31680 -11.25652 -10.99201 -10.95068 -10.83485 -10.79090 -10.59536 -10.25265 -10.20032 -9.98463 -9.62917 -9.50025 -8.98651 -8.54350 -8.33444 -6.74180 -5.83670 -3.29460 2.85602 3.18578 3.35770 3.42989 3.44444 4.23788 4.42832 4.59232 4.79000 4.89324 4.92684 5.15531 5.26788 5.31270 5.37936 5.38778 5.41116 5.50547 5.52302 5.64708 5.70867 5.74541 5.87775 5.93592 5.95981 6.07395 6.09860 6.14768 6.24040 6.26202 6.33186 6.46584 6.66309 6.73087 6.87846 7.13613 7.51186 7.64674 7.71492 7.88728 8.32178 8.42709 9.10107 9.73105 10.30458 11.24310 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017444 B = 0.005535 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.705182 B = 5057.662224 C = 6310.174384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.139 4.139 4 C 0.509 3.491 5 O -0.539 6.539 6 N -0.614 5.614 7 C 0.112 3.888 8 C -0.125 4.125 9 C 0.077 3.923 10 H 0.052 0.948 11 O -0.390 6.390 12 C 0.039 3.961 13 C 0.142 3.858 14 N -0.588 5.588 15 C -0.258 4.258 16 H 0.073 0.927 17 C 0.006 3.994 18 N -0.903 5.903 19 Si 0.905 3.095 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.277 1.277 23 C 0.137 3.863 24 H 0.036 0.964 25 C 0.123 3.877 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.040 0.960 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.027 0.973 41 H 0.255 0.745 42 H 0.101 0.899 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.508 3.597 -3.298 17.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.179 4.179 4 C 0.297 3.703 5 O -0.416 6.416 6 N -0.348 5.348 7 C -0.011 4.011 8 C -0.163 4.163 9 C 0.017 3.983 10 H 0.070 0.930 11 O -0.309 6.309 12 C -0.039 4.039 13 C 0.016 3.984 14 N -0.313 5.313 15 C -0.387 4.387 16 H 0.090 0.910 17 C -0.193 4.193 18 N -0.547 5.547 19 Si 0.734 3.266 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.203 1.203 23 C 0.029 3.971 24 H 0.053 0.947 25 C 0.001 3.999 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.059 0.941 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.045 0.955 41 H 0.065 0.935 42 H 0.119 0.881 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.096 3.052 -3.103 16.674 hybrid contribution 0.979 -0.234 -0.665 1.207 sum -15.117 2.818 -3.769 15.832 Atomic orbital electron populations 1.21791 0.95693 1.01789 1.01620 1.21290 0.94966 0.94952 1.03653 1.21743 0.92330 0.99895 1.03935 1.20712 0.90126 0.83353 0.76061 1.90710 1.70388 1.30906 1.49595 1.48320 1.07734 1.05576 1.73137 1.21692 0.96360 0.84299 0.98788 1.21850 0.95093 1.00114 0.99278 1.22418 0.92304 0.92397 0.91203 0.93020 1.87737 1.23308 1.67585 1.52251 1.23339 0.80795 0.99654 1.00093 1.21465 0.98358 0.85498 0.93045 1.44043 0.99039 1.43418 1.44797 1.19166 0.93160 1.28399 0.97942 0.90976 1.25072 0.98970 0.99403 0.95847 1.70007 1.16246 1.52070 1.16348 0.86245 0.80859 0.78441 0.81010 1.21370 1.21610 1.20257 1.21203 0.86961 0.92642 0.96337 0.94666 1.21630 0.76450 1.03068 0.98710 0.92749 0.92804 0.92547 0.91276 0.91201 0.89176 0.89055 0.91251 0.89496 0.90264 0.90856 0.94130 0.90068 0.88453 0.95459 0.93482 0.88055 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.11 -1.19 5.22 -26.73 -0.14 -1.33 16 3 C -0.14 -1.48 4.04 -27.88 -0.11 -1.59 16 4 C 0.51 8.08 7.69 -10.98 -0.08 8.00 16 5 O -0.54 -10.97 15.38 5.55 0.09 -10.88 16 6 N -0.61 -9.65 2.99 -173.00 -0.52 -10.16 16 7 C 0.11 1.30 6.32 -3.67 -0.02 1.28 16 8 C -0.12 -1.68 5.82 -26.65 -0.16 -1.83 16 9 C 0.08 1.38 2.48 -26.63 -0.07 1.32 16 10 H 0.05 0.95 8.13 -51.93 -0.42 0.53 16 11 O -0.39 -7.68 10.49 -35.23 -0.37 -8.05 16 12 C 0.04 0.77 6.95 37.25 0.26 1.03 16 13 C 0.14 3.41 5.42 -3.48 -0.02 3.39 16 14 N -0.59 -14.75 3.04 -164.66 -0.50 -15.25 16 15 C -0.26 -6.95 8.89 -15.06 -0.13 -7.08 16 16 H 0.07 1.90 6.26 -52.49 -0.33 1.57 16 17 C 0.01 0.17 5.01 -17.43 -0.09 0.08 16 18 N -0.90 -26.03 11.06 55.49 0.61 -25.42 16 19 Si 0.90 21.72 29.58 -169.99 -5.03 16.69 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.14 2.93 3.01 -67.78 -0.20 2.72 16 24 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 25 C 0.12 2.44 4.47 -3.97 -0.02 2.43 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 30 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 31 H 0.09 0.76 7.95 -51.93 -0.41 0.34 16 32 H 0.09 0.81 7.66 -51.93 -0.40 0.41 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.72 5.91 -51.93 -0.31 0.42 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.10 2.54 6.15 -51.93 -0.32 2.22 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.10 2.35 6.80 -51.92 -0.35 2.00 16 43 H 0.07 1.41 7.35 -51.93 -0.38 1.03 16 LS Contribution 331.25 15.07 4.99 4.99 Total: -1.00 -31.98 331.25 -8.27 -40.25 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -7.13 Total: 0.26 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: -0.42 Total: 7.57 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: -0.40 Total: -50.83 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.28 Total: -18.93 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.98 -8.27 -40.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074140632.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.537 kcal (2) G-P(sol) polarization free energy of solvation -31.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds