Wall clock time and date at job start Tue Mar 31 2020 05:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47309 * 2 1 4 4 C 1.50703 * 109.47316 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99773 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00211 * 179.97438 * 4 3 2 7 7 C 1.46836 * 120.40789 * 0.02562 * 6 4 3 8 8 C 1.53366 * 109.24433 * 127.74289 * 7 6 4 9 9 C 1.52787 * 108.81325 * 53.83740 * 8 7 6 10 10 H 1.08997 * 109.34097 * 56.66642 * 9 8 7 11 11 O 1.42603 * 111.11753 * 177.45304 * 9 8 7 12 12 C 1.43150 * 113.62659 * 183.64389 * 11 9 8 13 13 C 1.53184 * 109.73693 * 298.31387 * 12 11 9 14 14 N 1.47352 * 108.81365 * 51.20394 * 13 12 11 15 15 C 1.36931 * 121.30748 * 129.74063 * 14 13 12 16 16 H 1.07994 * 120.00177 * 206.96265 * 15 14 13 17 17 C 1.38812 * 119.99941 * 26.96131 * 15 14 13 18 18 N 1.31625 * 120.00140 * 14.43781 * 17 15 14 19 19 Si 1.86804 * 120.00128 * 194.43673 * 17 15 14 20 20 H 1.48501 * 109.47015 * 90.00209 * 19 17 15 21 21 H 1.48496 * 109.47128 * 210.00331 * 19 17 15 22 22 H 1.48500 * 109.46781 * 330.00203 * 19 17 15 23 23 C 1.46875 * 117.38833 * 309.76742 * 14 13 12 24 24 H 1.08997 * 109.65728 * 292.34331 * 23 14 13 25 25 C 1.47124 * 120.40964 * 179.72379 * 6 4 3 26 26 H 1.09001 * 109.46749 * 300.00061 * 1 2 3 27 27 H 1.08999 * 109.46686 * 59.99956 * 1 2 3 28 28 H 1.08995 * 109.47415 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46955 * 239.99442 * 2 1 3 30 30 H 1.08999 * 109.46686 * 120.00044 * 2 1 3 31 31 H 1.09000 * 109.46811 * 299.99917 * 3 2 1 32 32 H 1.09000 * 109.46835 * 59.99938 * 3 2 1 33 33 H 1.09000 * 109.50630 * 247.67212 * 7 6 4 34 34 H 1.09000 * 109.51169 * 7.81104 * 7 6 4 35 35 H 1.08996 * 109.58226 * 173.63905 * 8 7 6 36 36 H 1.09000 * 109.58098 * 294.03982 * 8 7 6 37 37 H 1.08996 * 109.42344 * 58.39544 * 12 11 9 38 38 H 1.08997 * 109.42688 * 178.28570 * 12 11 9 39 39 H 1.09002 * 109.58271 * 171.00119 * 13 12 11 40 40 H 1.09007 * 109.58273 * 291.40246 * 13 12 11 41 41 H 0.96996 * 119.99774 * 179.97438 * 18 17 15 42 42 H 1.09009 * 109.72369 * 352.89776 * 25 6 4 43 43 H 1.08998 * 109.72763 * 113.56450 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 8 4.1534 0.3921 0.0015 6 7 4.2210 2.6096 0.0002 7 6 3.4959 3.8865 -0.0003 8 6 4.0170 4.7641 1.1444 9 6 5.5349 4.8862 1.0200 10 1 5.7855 5.2870 0.0378 11 8 6.0659 5.7426 2.0291 12 6 7.4758 5.9612 1.9124 13 6 8.2195 4.6299 2.0583 14 7 7.6230 3.6487 1.1350 15 6 8.3996 2.9104 0.2824 16 1 7.9853 2.5443 -0.6453 17 6 9.7194 2.6324 0.6106 18 7 10.1455 2.8220 1.8415 19 14 10.8909 1.9892 -0.6946 20 1 11.5591 3.1324 -1.3666 21 1 11.9145 1.1226 -0.0572 22 1 10.1301 1.2013 -1.6974 23 6 6.1627 3.4940 1.1645 24 1 5.8599 3.0519 2.1136 25 6 5.6922 2.6201 0.0070 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.6557 4.3954 -0.9509 34 1 2.4310 3.7005 0.1394 35 1 3.5645 5.7537 1.0811 36 1 3.7646 4.3054 2.1004 37 1 7.6959 6.3944 0.9368 38 1 7.8025 6.6457 2.6951 39 1 9.2720 4.7705 1.8119 40 1 8.1272 4.2703 3.0832 41 1 11.0676 2.6274 2.0708 42 1 6.0667 1.6049 0.1386 43 1 6.0615 3.0301 -0.9330 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074140632.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:24 Heat of formation + Delta-G solvation = -82.718450 kcal Electronic energy + Delta-G solvation = -23707.456283 eV Core-core repulsion = 20366.202132 eV Total energy + Delta-G solvation = -3341.254151 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.52072 -40.11583 -37.48089 -36.57444 -35.31794 -33.51389 -32.97726 -31.50676 -29.49249 -28.43456 -26.47443 -25.46774 -23.81913 -23.04506 -22.28924 -21.39776 -19.92875 -18.71836 -18.30794 -17.21439 -17.08953 -16.86321 -16.69538 -16.26592 -15.81911 -15.58491 -15.26198 -14.93124 -14.69980 -14.61039 -14.16265 -13.90213 -13.71548 -13.36544 -13.03073 -12.88053 -12.82821 -12.76028 -12.57101 -12.38172 -12.34946 -12.09158 -11.97127 -11.88630 -11.71770 -11.59217 -11.27167 -10.80904 -10.76333 -10.54790 -9.69086 -8.77845 -7.94238 -5.43451 1.42240 1.43418 1.52278 1.63673 1.94523 2.44297 2.82049 3.20646 3.42717 3.56285 3.83796 3.93928 4.03438 4.09184 4.14577 4.17569 4.24635 4.39159 4.48960 4.50290 4.54471 4.62987 4.67964 4.75330 4.77358 4.83217 4.85882 4.94469 5.00273 5.10972 5.12338 5.27604 5.30433 5.31651 5.43217 5.50526 5.53495 5.59283 6.22945 6.32123 6.44962 7.01766 7.19523 7.69213 8.24010 9.11761 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017444 B = 0.005535 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.705182 B = 5057.662224 C = 6310.174384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C -0.127 4.127 4 C 0.499 3.501 5 O -0.598 6.598 6 N -0.613 5.613 7 C 0.109 3.891 8 C -0.117 4.117 9 C 0.080 3.920 10 H 0.056 0.944 11 O -0.392 6.392 12 C 0.052 3.948 13 C 0.146 3.854 14 N -0.607 5.607 15 C -0.262 4.262 16 H 0.074 0.926 17 C -0.048 4.048 18 N -0.936 5.936 19 Si 0.968 3.032 20 H -0.277 1.277 21 H -0.295 1.295 22 H -0.273 1.273 23 C 0.133 3.867 24 H 0.002 0.998 25 C 0.138 3.862 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.044 0.956 31 H 0.128 0.872 32 H 0.121 0.879 33 H 0.091 0.909 34 H 0.135 0.865 35 H 0.116 0.884 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.109 0.891 39 H 0.072 0.928 40 H -0.005 1.005 41 H 0.252 0.748 42 H 0.054 0.946 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.763 5.628 -4.715 21.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C -0.166 4.166 4 C 0.290 3.710 5 O -0.478 6.478 6 N -0.347 5.347 7 C -0.012 4.012 8 C -0.155 4.155 9 C 0.020 3.980 10 H 0.074 0.926 11 O -0.311 6.311 12 C -0.026 4.026 13 C 0.020 3.980 14 N -0.332 5.332 15 C -0.392 4.392 16 H 0.091 0.909 17 C -0.243 4.243 18 N -0.582 5.582 19 Si 0.796 3.204 20 H -0.203 1.203 21 H -0.222 1.222 22 H -0.198 1.198 23 C 0.026 3.974 24 H 0.019 0.981 25 C 0.014 3.986 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.146 0.854 32 H 0.139 0.861 33 H 0.109 0.891 34 H 0.153 0.847 35 H 0.134 0.866 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.127 0.873 39 H 0.090 0.910 40 H 0.013 0.987 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.410 5.127 -4.531 20.581 hybrid contribution 1.969 -0.921 -0.181 2.181 sum -17.442 4.205 -4.712 18.550 Atomic orbital electron populations 1.21735 0.92898 1.02395 1.03069 1.21286 0.97239 0.94924 1.01619 1.21830 0.87400 1.00367 1.06977 1.21849 0.92436 0.82307 0.74409 1.90688 1.71981 1.33083 1.52095 1.48436 1.05818 1.07682 1.72721 1.22112 0.98194 0.81801 0.99102 1.21907 0.91212 1.02552 0.99870 1.22538 0.95227 0.89156 0.91036 0.92607 1.87747 1.22778 1.67531 1.53029 1.23172 0.80579 0.97119 1.01688 1.21329 0.97906 0.87739 0.91019 1.44348 1.00709 1.43650 1.44504 1.19461 0.93580 1.27878 0.98283 0.90888 1.25838 1.00534 1.00315 0.97660 1.70168 1.16224 1.53706 1.18098 0.85255 0.78598 0.77932 0.78625 1.20315 1.22160 1.19762 1.21363 0.85222 0.95535 0.95281 0.98069 1.21105 0.79844 0.99839 0.97774 0.91435 0.91084 0.92544 0.93168 0.93707 0.85430 0.86078 0.89050 0.84687 0.86589 0.91476 0.93171 0.87272 0.90956 0.98727 0.93935 0.92693 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.91 71.98 0.71 -1.09 16 2 C -0.11 -2.24 5.22 30.59 0.16 -2.09 16 3 C -0.13 -2.23 4.04 29.85 0.12 -2.11 16 4 C 0.50 15.39 7.69 87.66 0.67 16.07 16 5 O -0.60 -25.37 15.38 -3.04 -0.05 -25.42 16 6 N -0.61 -18.41 2.99 -819.64 -2.45 -20.86 16 7 C 0.11 2.02 6.32 86.44 0.55 2.56 16 8 C -0.12 -2.68 5.82 30.65 0.18 -2.50 16 9 C 0.08 2.75 2.48 30.66 0.08 2.82 16 10 H 0.06 1.91 8.13 -2.39 -0.02 1.89 16 11 O -0.39 -14.75 10.49 -148.98 -1.56 -16.31 16 12 C 0.05 2.01 6.95 72.04 0.50 2.52 16 13 C 0.15 7.27 5.42 86.28 0.47 7.74 16 14 N -0.61 -31.63 3.04 -674.85 -2.05 -33.69 16 15 C -0.26 -14.70 8.89 84.03 0.75 -13.95 16 16 H 0.07 3.99 6.26 -2.91 -0.02 3.97 16 17 C -0.05 -2.74 5.01 84.86 0.43 -2.31 16 18 N -0.94 -56.46 11.06 21.65 0.24 -56.23 16 19 Si 0.97 45.97 29.58 68.60 2.03 47.99 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 21 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 22 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 23 C 0.13 5.86 3.01 44.88 0.14 6.00 16 24 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 25 C 0.14 5.63 4.47 86.09 0.38 6.02 16 26 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 30 H 0.04 1.10 8.10 -2.39 -0.02 1.08 16 31 H 0.13 1.38 7.95 -2.39 -0.02 1.37 16 32 H 0.12 1.50 7.66 -2.39 -0.02 1.48 16 33 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.14 1.30 5.91 -2.39 -0.01 1.28 16 35 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 39 H 0.07 3.95 6.15 -2.39 -0.01 3.94 16 40 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 41 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 42 H 0.05 2.73 6.80 -2.38 -0.02 2.71 16 43 H 0.07 2.80 7.35 -2.39 -0.02 2.78 16 Total: -1.00 -76.67 331.25 2.26 -74.41 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 0.98 Total: 10.43 kcal Atomic # 6 Polarization: 14.53 SS G_CDS: 5.13 Total: 19.66 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -4.26 Total: -110.77 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -1.61 Total: -41.73 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 47.99 kcal Total: -76.67 2.26 -74.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074140632.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.312 kcal (2) G-P(sol) polarization free energy of solvation -76.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds