Wall clock time and date at job start Tue Mar 31 2020 06:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47030 * 2 1 4 4 H 1.08999 * 109.47259 * 305.00173 * 3 2 1 5 5 C 1.52997 * 109.46856 * 65.00615 * 3 2 1 6 6 C 1.50707 * 109.46782 * 185.00051 * 3 2 1 7 7 O 1.21279 * 119.99894 * 341.95043 * 6 3 2 8 8 N 1.34777 * 119.99539 * 161.94338 * 6 3 2 9 9 C 1.44960 * 117.32487 * 355.29426 * 8 6 3 10 10 C 1.51973 * 111.88548 * 203.66328 * 9 8 6 11 11 O 1.41326 * 111.53416 * 319.32816 * 10 9 8 12 12 C 1.40789 * 118.38870 * 56.95635 * 11 10 9 13 13 H 1.09008 * 109.65610 * 188.46646 * 12 11 10 14 14 C 1.54204 * 110.22106 * 67.66643 * 12 11 10 15 15 N 1.46870 * 106.39701 * 210.34102 * 14 12 11 16 16 C 1.36937 * 125.36580 * 197.81602 * 15 14 12 17 17 H 1.08001 * 120.00155 * 165.36666 * 16 15 14 18 18 C 1.38813 * 119.99561 * 345.35954 * 16 15 14 19 19 N 1.31613 * 120.00391 * 332.04458 * 18 16 15 20 20 Si 1.86803 * 119.99738 * 152.03848 * 18 16 15 21 21 H 1.48495 * 109.47460 * 270.00471 * 20 18 16 22 22 H 1.48503 * 109.46777 * 29.99962 * 20 18 16 23 23 H 1.48498 * 109.47131 * 149.99877 * 20 18 16 24 24 C 1.46786 * 109.27034 * 18.07212 * 15 14 12 25 25 C 1.44541 * 117.31701 * 175.29450 * 8 6 3 26 26 H 1.09007 * 109.48864 * 287.00180 * 25 8 6 27 27 H 1.09001 * 109.47442 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47291 * 299.99889 * 1 2 3 29 29 H 1.09002 * 109.47449 * 59.99868 * 1 2 3 30 30 H 1.09007 * 109.46574 * 239.99924 * 2 1 3 31 31 H 1.08997 * 109.46841 * 120.00520 * 2 1 3 32 32 H 1.08995 * 109.47810 * 58.08549 * 5 3 2 33 33 H 1.09006 * 109.46620 * 178.08567 * 5 3 2 34 34 H 1.08998 * 109.46833 * 298.08055 * 5 3 2 35 35 H 1.08999 * 108.99966 * 83.03965 * 9 8 6 36 36 H 1.08996 * 108.92987 * 324.23546 * 9 8 6 37 37 H 1.09000 * 109.06980 * 198.79861 * 10 9 8 38 38 H 1.08997 * 109.07181 * 79.85346 * 10 9 8 39 39 H 1.09004 * 110.07132 * 91.09895 * 14 12 11 40 40 H 1.09006 * 110.11408 * 329.60002 * 14 12 11 41 41 H 0.97000 * 120.00196 * 352.97820 * 19 18 16 42 42 H 1.08995 * 109.82591 * 118.16536 * 24 15 14 43 43 H 1.09005 * 109.82914 * 239.13430 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6353 2.1264 1.3074 6 6 3.5419 1.4442 -0.1239 7 8 4.1717 0.4373 0.1215 8 7 4.1851 2.5648 -0.5074 9 6 3.3709 3.7026 -0.8869 10 6 4.1177 4.6508 -1.8103 11 8 5.4625 4.8148 -1.4080 12 6 6.2733 3.6690 -1.2994 13 1 7.2253 3.9356 -0.8403 14 6 6.5227 3.0585 -2.6932 15 7 6.6824 1.6127 -2.4901 16 6 7.2503 0.7446 -3.3841 17 1 7.5401 -0.2458 -3.0655 18 6 7.4532 1.1377 -4.6998 19 7 6.6675 2.0419 -5.2452 20 14 8.8415 0.3834 -5.6964 21 1 10.0724 1.1962 -5.5248 22 1 9.0934 -1.0020 -5.2246 23 1 8.4623 0.3562 -7.1319 24 6 6.1318 1.2438 -1.1803 25 6 5.6301 2.5335 -0.5066 26 1 5.9938 2.5560 0.5207 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8932 -0.5139 -0.8901 31 1 1.8932 -0.5139 0.8899 32 1 2.0417 1.5680 2.1506 33 1 2.0277 3.1433 1.3220 34 1 0.5482 2.1554 1.3809 35 1 3.0748 4.2427 0.0124 36 1 2.4762 3.3433 -1.3953 37 1 3.6221 5.6215 -1.8004 38 1 4.0956 4.2514 -2.8243 39 1 7.4300 3.4777 -3.1283 40 1 5.6712 3.2528 -3.3455 41 1 5.8866 2.3590 -4.7651 42 1 5.3046 0.5461 -1.3103 43 1 6.9093 0.7873 -0.5677 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083005997.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:12 Heat of formation + Delta-G solvation = -64.831477 kcal Electronic energy + Delta-G solvation = -24260.717488 eV Core-core repulsion = 20920.238974 eV Total energy + Delta-G solvation = -3340.478513 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.40077 -40.16145 -38.00029 -36.51052 -36.27790 -34.46960 -31.69626 -30.81884 -29.74096 -28.98164 -26.65387 -26.00490 -24.77645 -23.41898 -22.16312 -20.92669 -19.95807 -19.72391 -18.48091 -18.33688 -17.27521 -16.69832 -16.40185 -16.08894 -15.99686 -15.86982 -15.61270 -15.28561 -14.84992 -14.51513 -14.33879 -14.14194 -13.76698 -13.39988 -13.17400 -13.07595 -12.78961 -12.73198 -12.62347 -12.52525 -12.38701 -12.26618 -11.93225 -11.85870 -11.78128 -11.67958 -11.57263 -10.90599 -10.62627 -10.41582 -9.65920 -9.08947 -8.39170 -5.42907 1.50318 1.53036 1.60943 1.74630 1.79480 2.54672 2.62538 3.09248 3.19917 3.42910 3.53943 3.60437 3.75267 3.79597 3.90429 3.97177 4.06820 4.16689 4.21375 4.29714 4.42365 4.50553 4.56171 4.63214 4.68735 4.78256 4.85003 4.86351 4.94069 4.95981 5.00056 5.06702 5.10121 5.16959 5.34176 5.45180 5.53219 5.56846 6.13025 6.20600 6.30759 6.80387 7.08952 7.61313 8.14782 8.89214 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019370 B = 0.005705 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.213429 B = 4906.933216 C = 5642.636825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 C -0.104 4.104 4 H 0.113 0.887 5 C -0.135 4.135 6 C 0.498 3.502 7 O -0.571 6.571 8 N -0.596 5.596 9 C 0.071 3.929 10 C 0.046 3.954 11 O -0.368 6.368 12 C 0.100 3.900 13 H 0.132 0.868 14 C 0.128 3.872 15 N -0.620 5.620 16 C -0.351 4.351 17 H 0.055 0.945 18 C -0.074 4.074 19 N -0.941 5.941 20 Si 1.120 2.880 21 H -0.280 1.280 22 H -0.275 1.275 23 H -0.289 1.289 24 C 0.122 3.878 25 C 0.123 3.877 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.035 0.965 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.154 0.846 38 H 0.029 0.971 39 H 0.021 0.979 40 H 0.012 0.988 41 H 0.254 0.746 42 H 0.042 0.958 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.888 6.316 12.923 19.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.145 4.145 3 C -0.125 4.125 4 H 0.130 0.870 5 C -0.192 4.192 6 C 0.289 3.711 7 O -0.450 6.450 8 N -0.329 5.329 9 C -0.050 4.050 10 C -0.030 4.030 11 O -0.284 6.284 12 C 0.040 3.960 13 H 0.149 0.851 14 C 0.002 3.998 15 N -0.348 5.348 16 C -0.479 4.479 17 H 0.072 0.928 18 C -0.270 4.270 19 N -0.584 5.584 20 Si 0.944 3.056 21 H -0.206 1.206 22 H -0.201 1.201 23 H -0.215 1.215 24 C -0.003 4.003 25 C 0.018 3.982 26 H 0.107 0.893 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.171 0.829 38 H 0.047 0.953 39 H 0.039 0.961 40 H 0.030 0.970 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -12.642 6.011 11.606 18.184 hybrid contribution -0.464 -0.839 0.921 1.330 sum -13.106 5.172 12.528 18.854 Atomic orbital electron populations 1.21785 0.92636 1.02538 1.03137 1.21347 0.97673 0.94134 1.01385 1.21491 0.88303 0.99746 1.02919 0.86960 1.21788 1.03753 1.00349 0.93297 1.21693 0.92105 0.81761 0.75575 1.90644 1.69599 1.34012 1.50764 1.46894 1.04986 1.14654 1.66379 1.22082 0.94377 0.87192 1.01375 1.22665 0.81689 1.02495 0.96154 1.86880 1.22843 1.30503 1.88217 1.22450 0.94517 0.85021 0.93991 0.85057 1.21770 0.97834 0.84624 0.95621 1.44594 1.70441 1.03021 1.16770 1.20031 1.37585 0.98049 0.92205 0.92756 1.27219 1.04556 1.00357 0.94891 1.70882 1.14309 1.34712 1.38457 0.82795 0.73251 0.75351 0.74212 1.20639 1.20059 1.21498 1.21889 0.96050 0.96108 0.86266 1.21304 0.81496 0.95630 0.99787 0.89330 0.92326 0.90398 0.91862 0.94607 0.92410 0.93120 0.90864 0.88336 0.87483 0.87617 0.82878 0.95283 0.96054 0.97038 0.93546 0.94011 0.96003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.67 71.98 0.70 -1.52 16 2 C -0.11 -2.51 4.76 30.59 0.15 -2.37 16 3 C -0.10 -2.26 1.98 -11.54 -0.02 -2.28 16 4 H 0.11 2.00 6.15 -2.39 -0.01 1.98 16 5 C -0.13 -1.99 8.80 71.98 0.63 -1.36 16 6 C 0.50 16.31 6.25 87.66 0.55 16.86 16 7 O -0.57 -24.07 13.08 -3.03 -0.04 -24.11 16 8 N -0.60 -18.77 3.09 -806.97 -2.49 -21.27 16 9 C 0.07 1.55 5.46 86.33 0.47 2.02 16 10 C 0.05 1.17 6.74 71.64 0.48 1.65 16 11 O -0.37 -11.84 10.25 -145.88 -1.50 -13.33 16 12 C 0.10 3.77 3.92 30.90 0.12 3.89 16 13 H 0.13 4.54 8.14 -2.38 -0.02 4.52 16 14 C 0.13 6.38 5.00 86.72 0.43 6.81 16 15 N -0.62 -34.59 3.31 -696.20 -2.30 -36.90 16 16 C -0.35 -21.57 10.01 84.03 0.84 -20.73 16 17 H 0.05 3.40 7.97 -2.91 -0.02 3.37 16 18 C -0.07 -4.50 5.14 84.86 0.44 -4.06 16 19 N -0.94 -59.89 12.93 21.65 0.28 -59.61 16 20 Si 1.12 53.70 30.00 68.60 2.06 55.76 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 24 C 0.12 5.96 6.04 86.63 0.52 6.48 16 25 C 0.12 4.64 3.36 45.56 0.15 4.80 16 26 H 0.09 3.07 8.14 -2.38 -0.02 3.05 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.08 0.89 6.61 -2.38 -0.02 0.87 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.06 1.49 8.07 -2.39 -0.02 1.47 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.92 6.45 -2.38 -0.02 0.90 16 34 H 0.10 0.93 6.66 -2.39 -0.02 0.91 16 35 H 0.11 1.59 6.92 -2.39 -0.02 1.57 16 36 H 0.11 1.86 5.95 -2.39 -0.01 1.84 16 37 H 0.15 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.03 0.91 6.73 -2.39 -0.02 0.90 16 39 H 0.02 1.17 8.09 -2.38 -0.02 1.15 16 40 H 0.01 0.65 4.73 -2.38 -0.01 0.64 16 41 H 0.25 16.41 5.83 -92.71 -0.54 15.87 16 42 H 0.04 2.27 5.15 -2.39 -0.01 2.26 16 43 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -80.18 321.52 2.70 -77.48 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 1.23 Total: 11.77 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 5.46 Total: 10.20 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -4.52 Total: -117.77 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -1.53 Total: -37.44 kcal Atomic # 14 Polarization: 53.70 SS G_CDS: 2.06 Total: 55.76 kcal Total: -80.18 2.70 -77.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083005997.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.649 kcal (2) G-P(sol) polarization free energy of solvation -80.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds