Wall clock time and date at job start Tue Mar 31 2020 06:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47421 * 2 1 4 4 H 1.08999 * 109.46727 * 55.00061 * 3 2 1 5 5 C 1.52997 * 109.46798 * 295.00018 * 3 2 1 6 6 C 1.50693 * 109.46992 * 174.99700 * 3 2 1 7 7 O 1.21283 * 120.00011 * 18.89018 * 6 3 2 8 8 N 1.34777 * 119.99987 * 198.88514 * 6 3 2 9 9 C 1.44965 * 117.33878 * 357.37544 * 8 6 3 10 10 C 1.51958 * 111.93254 * 203.75793 * 9 8 6 11 11 O 1.41321 * 111.61132 * 319.68044 * 10 9 8 12 12 C 1.40307 * 117.96722 * 57.07106 * 11 10 9 13 13 H 1.08997 * 108.36228 * 187.79422 * 12 11 10 14 14 C 1.53906 * 110.52675 * 67.77441 * 12 11 10 15 15 N 1.46765 * 107.63070 * 220.90282 * 14 12 11 16 16 C 1.36933 * 125.36447 * 178.78553 * 15 14 12 17 17 H 1.08009 * 120.00524 * 180.02562 * 16 15 14 18 18 C 1.38813 * 120.00307 * 0.02562 * 16 15 14 19 19 N 1.31617 * 119.99474 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00429 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47016 * 90.00378 * 20 18 16 22 22 H 1.48497 * 109.47306 * 210.00190 * 20 18 16 23 23 H 1.48504 * 109.46774 * 330.00232 * 20 18 16 24 24 C 1.46868 * 109.27439 * 358.80206 * 15 14 12 25 25 C 1.44542 * 117.34073 * 177.34742 * 8 6 3 26 26 H 1.09004 * 109.64629 * 285.97923 * 25 8 6 27 27 H 1.08995 * 109.47154 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47063 * 300.00424 * 1 2 3 29 29 H 1.09007 * 109.46599 * 60.00196 * 1 2 3 30 30 H 1.08996 * 109.47063 * 239.99575 * 2 1 3 31 31 H 1.09007 * 109.46599 * 119.99804 * 2 1 3 32 32 H 1.09002 * 109.46810 * 306.89180 * 5 3 2 33 33 H 1.08997 * 109.47609 * 66.89889 * 5 3 2 34 34 H 1.09001 * 109.46551 * 186.89780 * 5 3 2 35 35 H 1.08994 * 108.98650 * 324.39156 * 9 8 6 36 36 H 1.08995 * 108.98469 * 83.20808 * 9 8 6 37 37 H 1.08995 * 109.05737 * 80.23309 * 10 9 8 38 38 H 1.09005 * 109.04934 * 199.13601 * 10 9 8 39 39 H 1.09006 * 109.82243 * 101.37564 * 14 12 11 40 40 H 1.09000 * 109.82555 * 340.43200 * 14 12 11 41 41 H 0.97005 * 120.00191 * 179.97438 * 19 18 16 42 42 H 1.09007 * 110.06770 * 137.03220 * 24 15 14 43 43 H 1.09000 * 110.07181 * 258.49566 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8418 5 6 1.6354 2.1264 -1.3073 6 6 3.5420 1.4442 0.1239 7 8 4.1730 0.4416 -0.1361 8 7 4.1839 2.5598 0.5236 9 6 3.3790 3.7415 0.7629 10 6 4.1931 5.0182 0.6352 11 8 5.4776 4.8758 1.2069 12 6 6.3009 3.8459 0.7272 13 1 7.1852 3.7894 1.3620 14 6 6.7270 4.1275 -0.7246 15 7 6.6645 2.8590 -1.4602 16 6 6.9477 2.6995 -2.7904 17 1 6.8728 1.7226 -3.2452 18 6 7.3309 3.7931 -3.5545 19 7 7.4226 4.9834 -3.0003 20 14 7.7165 3.5756 -5.3693 21 1 6.4776 3.7680 -6.1651 22 1 8.7313 4.5776 -5.7833 23 1 8.2472 2.2083 -5.6022 24 6 6.2500 1.7878 -0.5449 25 6 5.6187 2.4804 0.6792 26 1 5.8589 1.9189 1.5820 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.9657 1.5211 -2.1515 33 1 0.5513 2.2350 -1.3402 34 1 2.1009 3.1105 -1.3617 35 1 2.5632 3.7672 0.0406 36 1 2.9608 3.6880 1.7680 37 1 4.2992 5.2685 -0.4203 38 1 3.6666 5.8279 1.1404 39 1 7.7456 4.5153 -0.7423 40 1 6.0473 4.8503 -1.1758 41 1 7.6908 5.7477 -3.5341 42 1 5.5162 1.1442 -1.0303 43 1 7.1164 1.2015 -0.2385 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083005998.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:16 Heat of formation + Delta-G solvation = -36.083903 kcal Electronic energy + Delta-G solvation = -24410.810648 eV Core-core repulsion = 21071.578723 eV Total energy + Delta-G solvation = -3339.231925 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.89006 -38.63107 -36.12902 -35.18114 -34.79460 -32.33573 -30.05837 -29.76221 -27.91930 -27.32240 -25.22945 -24.47149 -23.28768 -22.01211 -20.42012 -19.50503 -18.32841 -17.48470 -16.83609 -16.45800 -15.73971 -15.36820 -15.19055 -14.73437 -14.47495 -14.27730 -13.90916 -13.52601 -13.42760 -12.88779 -12.73402 -12.34956 -12.20770 -12.08546 -11.81124 -11.73214 -11.60230 -11.11992 -11.04774 -10.89045 -10.82688 -10.70687 -10.57807 -10.57019 -10.32852 -10.06138 -9.68749 -9.26110 -8.76462 -8.55720 -8.14394 -6.76100 -5.68529 -3.01254 2.86933 3.17303 3.41387 3.46735 3.49037 4.16110 4.49507 4.54660 4.73535 4.91254 4.93332 5.12778 5.17538 5.28895 5.32089 5.34876 5.42652 5.45602 5.55110 5.61845 5.68573 5.75440 5.77548 5.86512 5.90247 5.97580 6.01801 6.04179 6.11128 6.28982 6.30471 6.34336 6.59613 6.88924 7.24080 7.44294 7.54141 7.61380 7.76049 7.93084 8.28338 8.48805 9.25515 9.85981 10.49850 11.42927 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016689 B = 0.006431 C = 0.005421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.369134 B = 4352.912430 C = 5164.293133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.105 4.105 3 C -0.110 4.110 4 H 0.089 0.911 5 C -0.147 4.147 6 C 0.511 3.489 7 O -0.526 6.526 8 N -0.584 5.584 9 C 0.072 3.928 10 C 0.056 3.944 11 O -0.369 6.369 12 C 0.067 3.933 13 H 0.108 0.892 14 C 0.153 3.847 15 N -0.601 5.601 16 C -0.220 4.220 17 H 0.078 0.922 18 C -0.010 4.010 19 N -0.925 5.925 20 Si 0.911 3.089 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.109 3.891 25 C 0.111 3.889 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.101 0.899 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.251 0.749 42 H 0.088 0.912 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.355 -2.638 9.250 16.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.143 4.143 3 C -0.131 4.131 4 H 0.107 0.893 5 C -0.204 4.204 6 C 0.299 3.701 7 O -0.403 6.403 8 N -0.318 5.318 9 C -0.052 4.052 10 C -0.022 4.022 11 O -0.286 6.286 12 C 0.008 3.992 13 H 0.125 0.875 14 C 0.028 3.972 15 N -0.329 5.329 16 C -0.348 4.348 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.573 5.573 20 Si 0.742 3.258 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.017 4.017 25 C 0.006 3.994 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.119 0.881 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.105 0.895 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -12.842 -2.870 9.104 16.001 hybrid contribution 0.196 -0.035 -1.122 1.140 sum -12.646 -2.905 7.982 15.234 Atomic orbital electron populations 1.21824 0.95650 1.01664 1.01763 1.21350 0.95171 0.94355 1.03396 1.21370 0.92275 0.99109 1.00365 0.89290 1.21886 1.01574 1.00963 0.96020 1.20677 0.89992 0.82958 0.76476 1.90585 1.67756 1.33458 1.48520 1.46609 1.06822 1.10783 1.67551 1.21813 0.94973 0.86832 1.01541 1.22229 0.84035 0.95518 1.00376 1.86823 1.25806 1.52387 1.63556 1.22881 0.91918 0.84623 0.99759 0.87482 1.21657 1.00866 0.89316 0.85380 1.44226 1.80045 1.02771 1.05862 1.19063 1.38257 0.94466 0.83048 0.90455 1.24777 1.02063 0.95503 0.98252 1.69953 1.54295 0.98678 1.34414 0.86118 0.77657 0.77117 0.84920 1.21741 1.21687 1.20684 1.22109 0.97171 0.92495 0.89902 1.21693 0.79546 0.98482 0.99680 0.91273 0.92644 0.92901 0.92410 0.90864 0.91714 0.91558 0.91430 0.91628 0.89308 0.92017 0.92000 0.88080 0.93159 0.92702 0.93834 0.89478 0.95880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.67 37.16 0.36 -0.97 16 2 C -0.10 -1.22 4.77 -26.73 -0.13 -1.35 16 3 C -0.11 -1.36 1.88 -91.78 -0.17 -1.53 16 4 H 0.09 0.91 7.30 -51.93 -0.38 0.53 16 5 C -0.15 -1.74 8.38 37.16 0.31 -1.43 16 6 C 0.51 8.64 6.34 -10.99 -0.07 8.57 16 7 O -0.53 -10.66 13.00 5.56 0.07 -10.59 16 8 N -0.58 -9.94 3.09 -168.84 -0.52 -10.46 16 9 C 0.07 0.97 5.47 -5.39 -0.03 0.94 16 10 C 0.06 0.84 6.71 36.63 0.25 1.08 16 11 O -0.37 -6.66 10.25 -33.49 -0.34 -7.00 16 12 C 0.07 1.33 3.78 -26.41 -0.10 1.23 16 13 H 0.11 1.96 8.14 -51.93 -0.42 1.53 16 14 C 0.15 3.78 5.02 -3.43 -0.02 3.77 16 15 N -0.60 -15.91 3.39 -171.44 -0.58 -16.49 16 16 C -0.22 -6.34 10.25 -15.06 -0.15 -6.49 16 17 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 18 C -0.01 -0.30 5.48 -17.43 -0.10 -0.39 16 19 N -0.93 -27.39 10.26 55.49 0.57 -26.82 16 20 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 C 0.11 2.51 6.30 -3.23 -0.02 2.49 16 25 C 0.11 2.13 3.43 -68.51 -0.23 1.90 16 26 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.48 6.72 -51.93 -0.35 0.13 16 30 H 0.07 0.96 8.06 -51.93 -0.42 0.55 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.61 6.91 -51.93 -0.36 0.26 16 34 H 0.06 0.83 5.91 -51.93 -0.31 0.52 16 35 H 0.09 1.04 4.36 -51.93 -0.23 0.82 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 1.08 6.77 -51.93 -0.35 0.73 16 38 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.05 1.38 7.49 -51.93 -0.39 0.99 16 40 H 0.06 1.49 5.71 -51.93 -0.30 1.19 16 41 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.09 2.15 4.79 -52.48 -0.25 1.90 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 321.80 15.07 4.85 4.85 Total: -1.00 -32.76 321.80 -7.76 -40.52 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -6.68 Total: 0.58 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -0.10 Total: 7.82 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: -0.53 Total: -53.78 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.27 Total: -17.58 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.76 -7.76 -40.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083005998.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.441 kcal (2) G-P(sol) polarization free energy of solvation -32.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds