Wall clock time and date at job start Tue Mar 31 2020 06:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47421 * 2 1 4 4 H 1.08999 * 109.46727 * 55.00061 * 3 2 1 5 5 C 1.52997 * 109.46798 * 295.00018 * 3 2 1 6 6 C 1.50693 * 109.46992 * 174.99700 * 3 2 1 7 7 O 1.21283 * 120.00011 * 18.89018 * 6 3 2 8 8 N 1.34777 * 119.99987 * 198.88514 * 6 3 2 9 9 C 1.44965 * 117.33878 * 357.37544 * 8 6 3 10 10 C 1.51958 * 111.93254 * 203.75793 * 9 8 6 11 11 O 1.41321 * 111.61132 * 319.68044 * 10 9 8 12 12 C 1.40307 * 117.96722 * 57.07106 * 11 10 9 13 13 H 1.08997 * 108.36228 * 187.79422 * 12 11 10 14 14 C 1.53906 * 110.52675 * 67.77441 * 12 11 10 15 15 N 1.46765 * 107.63070 * 220.90282 * 14 12 11 16 16 C 1.36933 * 125.36447 * 178.78553 * 15 14 12 17 17 H 1.08009 * 120.00524 * 180.02562 * 16 15 14 18 18 C 1.38813 * 120.00307 * 0.02562 * 16 15 14 19 19 N 1.31617 * 119.99474 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00429 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47016 * 90.00378 * 20 18 16 22 22 H 1.48497 * 109.47306 * 210.00190 * 20 18 16 23 23 H 1.48504 * 109.46774 * 330.00232 * 20 18 16 24 24 C 1.46868 * 109.27439 * 358.80206 * 15 14 12 25 25 C 1.44542 * 117.34073 * 177.34742 * 8 6 3 26 26 H 1.09004 * 109.64629 * 285.97923 * 25 8 6 27 27 H 1.08995 * 109.47154 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47063 * 300.00424 * 1 2 3 29 29 H 1.09007 * 109.46599 * 60.00196 * 1 2 3 30 30 H 1.08996 * 109.47063 * 239.99575 * 2 1 3 31 31 H 1.09007 * 109.46599 * 119.99804 * 2 1 3 32 32 H 1.09002 * 109.46810 * 306.89180 * 5 3 2 33 33 H 1.08997 * 109.47609 * 66.89889 * 5 3 2 34 34 H 1.09001 * 109.46551 * 186.89780 * 5 3 2 35 35 H 1.08994 * 108.98650 * 324.39156 * 9 8 6 36 36 H 1.08995 * 108.98469 * 83.20808 * 9 8 6 37 37 H 1.08995 * 109.05737 * 80.23309 * 10 9 8 38 38 H 1.09005 * 109.04934 * 199.13601 * 10 9 8 39 39 H 1.09006 * 109.82243 * 101.37564 * 14 12 11 40 40 H 1.09000 * 109.82555 * 340.43200 * 14 12 11 41 41 H 0.97005 * 120.00191 * 179.97438 * 19 18 16 42 42 H 1.09007 * 110.06770 * 137.03220 * 24 15 14 43 43 H 1.09000 * 110.07181 * 258.49566 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8418 5 6 1.6354 2.1264 -1.3073 6 6 3.5420 1.4442 0.1239 7 8 4.1730 0.4416 -0.1361 8 7 4.1839 2.5598 0.5236 9 6 3.3790 3.7415 0.7629 10 6 4.1931 5.0182 0.6352 11 8 5.4776 4.8758 1.2069 12 6 6.3009 3.8459 0.7272 13 1 7.1852 3.7894 1.3620 14 6 6.7270 4.1275 -0.7246 15 7 6.6645 2.8590 -1.4602 16 6 6.9477 2.6995 -2.7904 17 1 6.8728 1.7226 -3.2452 18 6 7.3309 3.7931 -3.5545 19 7 7.4226 4.9834 -3.0003 20 14 7.7165 3.5756 -5.3693 21 1 6.4776 3.7680 -6.1651 22 1 8.7313 4.5776 -5.7833 23 1 8.2472 2.2083 -5.6022 24 6 6.2500 1.7878 -0.5449 25 6 5.6187 2.4804 0.6792 26 1 5.8589 1.9189 1.5820 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.9657 1.5211 -2.1515 33 1 0.5513 2.2350 -1.3402 34 1 2.1009 3.1105 -1.3617 35 1 2.5632 3.7672 0.0406 36 1 2.9608 3.6880 1.7680 37 1 4.2992 5.2685 -0.4203 38 1 3.6666 5.8279 1.1404 39 1 7.7456 4.5153 -0.7423 40 1 6.0473 4.8503 -1.1758 41 1 7.6908 5.7477 -3.5341 42 1 5.5162 1.1442 -1.0303 43 1 7.1164 1.2015 -0.2385 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083005998.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:16 Heat of formation + Delta-G solvation = -58.651112 kcal Electronic energy + Delta-G solvation = -24411.789235 eV Core-core repulsion = 21071.578723 eV Total energy + Delta-G solvation = -3340.210513 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.28767 -40.04047 -37.75348 -36.42575 -36.14784 -34.26574 -31.74050 -30.73728 -29.57288 -28.97593 -26.70801 -25.92576 -24.70296 -23.34740 -22.03442 -20.90500 -19.70101 -19.16136 -18.26733 -18.15815 -17.05690 -16.92057 -16.56488 -16.34268 -15.80581 -15.57189 -15.44241 -15.22281 -14.63403 -14.19517 -14.12563 -13.84941 -13.60397 -13.46546 -13.19830 -12.99155 -12.90042 -12.77219 -12.63588 -12.39973 -12.36003 -12.16583 -12.02106 -11.85723 -11.73651 -11.63358 -11.54531 -10.81558 -10.75293 -10.20109 -9.52913 -8.90994 -7.89821 -5.25901 1.40641 1.42554 1.51984 1.57677 1.88884 2.44176 2.79329 3.27323 3.31779 3.59442 3.70003 3.74783 3.83269 3.94524 3.98720 4.08839 4.22312 4.35405 4.37390 4.41935 4.52490 4.54982 4.62296 4.67731 4.75338 4.85860 4.91621 4.98992 5.01396 5.11266 5.16749 5.21781 5.37138 5.38714 5.45387 5.50660 5.61655 5.67307 6.14053 6.28072 6.43026 7.05184 7.18013 7.71657 8.33895 9.19389 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016689 B = 0.006431 C = 0.005421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.369134 B = 4352.912430 C = 5164.293133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.103 4.103 3 C -0.100 4.100 4 H 0.125 0.875 5 C -0.144 4.144 6 C 0.500 3.500 7 O -0.569 6.569 8 N -0.592 5.592 9 C 0.067 3.933 10 C 0.049 3.951 11 O -0.370 6.370 12 C 0.084 3.916 13 H 0.123 0.877 14 C 0.165 3.835 15 N -0.618 5.618 16 C -0.244 4.244 17 H 0.071 0.929 18 C -0.059 4.059 19 N -0.947 5.947 20 Si 0.978 3.022 21 H -0.284 1.284 22 H -0.289 1.289 23 H -0.274 1.274 24 C 0.107 3.893 25 C 0.121 3.879 26 H 0.088 0.912 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.040 0.960 33 H 0.104 0.896 34 H 0.056 0.944 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.027 0.973 38 H 0.147 0.853 39 H 0.012 0.988 40 H 0.026 0.974 41 H 0.248 0.752 42 H 0.072 0.928 43 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.884 -2.257 10.469 19.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.141 4.141 3 C -0.121 4.121 4 H 0.143 0.857 5 C -0.201 4.201 6 C 0.290 3.710 7 O -0.449 6.449 8 N -0.324 5.324 9 C -0.055 4.055 10 C -0.028 4.028 11 O -0.287 6.287 12 C 0.024 3.976 13 H 0.141 0.859 14 C 0.039 3.961 15 N -0.345 5.345 16 C -0.372 4.372 17 H 0.089 0.911 18 C -0.252 4.252 19 N -0.596 5.596 20 Si 0.806 3.194 21 H -0.210 1.210 22 H -0.215 1.215 23 H -0.199 1.199 24 C -0.019 4.019 25 C 0.016 3.984 26 H 0.106 0.894 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.122 0.878 34 H 0.075 0.925 35 H 0.127 0.873 36 H 0.120 0.880 37 H 0.046 0.954 38 H 0.165 0.835 39 H 0.031 0.969 40 H 0.044 0.956 41 H 0.058 0.942 42 H 0.090 0.910 43 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -15.405 -2.482 10.346 18.722 hybrid contribution 0.977 -0.152 -1.520 1.813 sum -14.428 -2.634 8.826 17.118 Atomic orbital electron populations 1.21784 0.92882 1.02534 1.03000 1.21328 0.97430 0.93545 1.01815 1.21440 0.88637 1.00145 1.01875 0.85687 1.21887 1.03785 0.99703 0.94715 1.21617 0.91987 0.82157 0.75204 1.90559 1.69076 1.35055 1.50210 1.46807 1.05958 1.12208 1.67449 1.22121 0.94515 0.84360 1.04460 1.22551 0.83269 0.98021 0.98955 1.86829 1.27094 1.51654 1.63106 1.22582 0.93155 0.85424 0.96419 0.85936 1.21404 0.98066 0.88089 0.88492 1.44454 1.79992 1.04263 1.05808 1.19328 1.38819 0.94472 0.84620 0.91120 1.25590 1.01970 0.95166 1.02493 1.70170 1.54626 0.99139 1.35688 0.85094 0.77441 0.77245 0.79648 1.21049 1.21474 1.19873 1.22161 0.96761 0.91931 0.91011 1.21436 0.81242 0.97546 0.98205 0.89406 0.92127 0.91034 0.91667 0.93475 0.92470 0.94124 0.87777 0.92478 0.87330 0.87989 0.95426 0.83538 0.96934 0.95606 0.94219 0.91000 0.96587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.67 71.98 0.70 -1.36 16 2 C -0.10 -2.23 4.77 30.60 0.15 -2.08 16 3 C -0.10 -2.22 1.88 -11.54 -0.02 -2.24 16 4 H 0.13 1.92 7.30 -2.39 -0.02 1.90 16 5 C -0.14 -3.09 8.38 71.98 0.60 -2.49 16 6 C 0.50 16.47 6.34 87.65 0.56 17.03 16 7 O -0.57 -23.51 13.00 -3.04 -0.04 -23.55 16 8 N -0.59 -19.22 3.09 -806.46 -2.49 -21.71 16 9 C 0.07 1.59 5.47 86.32 0.47 2.06 16 10 C 0.05 1.35 6.71 71.64 0.48 1.83 16 11 O -0.37 -12.77 10.25 -142.74 -1.46 -14.23 16 12 C 0.08 3.29 3.78 30.81 0.12 3.41 16 13 H 0.12 4.40 8.14 -2.39 -0.02 4.38 16 14 C 0.16 8.48 5.02 86.63 0.43 8.91 16 15 N -0.62 -34.03 3.39 -696.33 -2.36 -36.39 16 16 C -0.24 -14.57 10.25 84.03 0.86 -13.70 16 17 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 18 C -0.06 -3.47 5.48 84.86 0.47 -3.01 16 19 N -0.95 -57.97 10.26 21.65 0.22 -57.74 16 20 Si 0.98 47.39 29.55 68.60 2.03 49.42 16 21 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 22 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 23 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 24 C 0.11 5.08 6.30 86.70 0.55 5.63 16 25 C 0.12 4.62 3.43 45.66 0.16 4.78 16 26 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.84 6.72 -2.38 -0.02 0.82 16 30 H 0.05 1.25 8.06 -2.39 -0.02 1.23 16 31 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.10 1.48 6.91 -2.39 -0.02 1.47 16 34 H 0.06 1.33 5.91 -2.39 -0.01 1.31 16 35 H 0.11 2.16 4.36 -2.39 -0.01 2.15 16 36 H 0.10 1.70 8.14 -2.39 -0.02 1.69 16 37 H 0.03 0.96 6.77 -2.39 -0.02 0.94 16 38 H 0.15 2.74 8.14 -2.38 -0.02 2.72 16 39 H 0.01 0.72 7.49 -2.38 -0.02 0.71 16 40 H 0.03 1.47 5.71 -2.39 -0.01 1.45 16 41 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 42 H 0.07 3.70 4.79 -11.11 -0.05 3.65 16 43 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -75.51 321.80 2.37 -73.14 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 0.96 Total: 12.31 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: 5.51 Total: 18.76 kcal Atomic # 7 Polarization: -111.22 SS G_CDS: -4.63 Total: -115.85 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -1.50 Total: -37.78 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -75.51 2.37 -73.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083005998.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.493 kcal (2) G-P(sol) polarization free energy of solvation -75.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds