Wall clock time and date at job start Tue Mar 31 2020 05:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50696 * 120.00472 * 2 1 4 4 C 1.53000 * 109.47784 * 240.00288 * 3 2 1 5 5 O 1.42898 * 109.47200 * 0.02562 * 3 2 1 6 6 C 1.53002 * 109.46926 * 119.99866 * 3 2 1 7 7 C 1.50696 * 109.47303 * 180.02562 * 6 3 2 8 8 O 1.21284 * 120.00109 * 0.02562 * 7 6 3 9 9 N 1.34777 * 120.00137 * 180.02562 * 7 6 3 10 10 C 1.46506 * 119.99873 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47035 * 179.97438 * 10 9 7 12 12 C 1.53784 * 113.61168 * 274.13488 * 11 10 9 13 13 C 1.53951 * 87.01629 * 220.04779 * 12 11 10 14 14 N 1.46504 * 113.74205 * 139.94735 * 13 12 11 15 15 C 1.36932 * 120.00275 * 107.39800 * 14 13 12 16 16 H 1.08002 * 119.99861 * 0.02562 * 15 14 13 17 17 C 1.38809 * 120.00338 * 179.97438 * 15 14 13 18 18 N 1.31618 * 119.99701 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00348 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.46997 * 60.00310 * 19 17 15 21 21 H 1.48501 * 109.47087 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46746 * 300.00204 * 19 17 15 23 23 C 1.53772 * 87.11347 * 25.36206 * 13 12 11 24 24 H 1.08001 * 119.99265 * 359.97438 * 1 2 3 25 25 H 1.07991 * 120.00137 * 179.97438 * 1 2 3 26 26 H 1.08004 * 119.99369 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.46724 * 300.00418 * 4 3 2 28 28 H 1.09001 * 109.46741 * 60.00042 * 4 3 2 29 29 H 1.08992 * 109.47132 * 180.02562 * 4 3 2 30 30 H 0.96704 * 114.00506 * 59.98975 * 5 3 2 31 31 H 1.09000 * 109.46986 * 60.00556 * 6 3 2 32 32 H 1.08996 * 109.47407 * 300.00784 * 6 3 2 33 33 H 0.96999 * 120.00047 * 359.97438 * 9 7 6 34 34 H 1.09004 * 109.47073 * 299.99562 * 10 9 7 35 35 H 1.09000 * 109.47212 * 59.99645 * 10 9 7 36 36 H 1.08999 * 112.84703 * 45.32647 * 11 10 9 37 37 H 1.08998 * 113.61528 * 334.56969 * 12 11 10 38 38 H 1.09002 * 113.61529 * 105.47075 * 12 11 10 39 39 H 1.09001 * 113.53832 * 270.80886 * 13 12 11 40 40 H 0.96995 * 119.99648 * 287.39808 * 14 13 12 41 41 H 0.97003 * 120.00060 * 179.97438 * 18 17 15 42 42 H 1.09001 * 113.61872 * 220.08438 * 23 13 12 43 43 H 1.09004 * 113.61309 * 89.18616 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9432 1.3862 -1.2492 5 8 1.1351 2.3912 0.0006 6 6 2.9432 1.3859 1.2493 7 6 3.6964 2.6912 1.2497 8 8 3.5442 3.4794 0.3405 9 7 4.5390 2.9827 2.2603 10 6 5.2708 4.2519 2.2610 11 6 6.1505 4.3328 3.5102 12 6 5.4171 4.8815 4.7455 13 6 6.7078 5.6563 5.0679 14 7 6.4721 7.0150 5.5625 15 6 6.6818 7.3088 6.8834 16 1 7.0212 6.5390 7.5606 17 6 6.4591 8.5964 7.3519 18 7 6.0459 9.5347 6.5266 19 14 6.7457 8.9974 9.1537 20 1 8.1646 8.7299 9.5007 21 1 6.4376 10.4295 9.3972 22 1 5.8622 8.1513 9.9957 23 6 7.0278 5.5945 3.5652 24 1 -0.5399 0.9354 0.0004 25 1 -0.5400 -0.9352 -0.0004 26 1 1.8499 -0.9354 -0.0004 27 1 3.6515 0.5576 -1.2493 28 1 2.3165 1.3285 -2.1392 29 1 3.4886 2.3299 -1.2489 30 1 0.5439 2.4030 0.7658 31 1 3.6515 0.5574 1.2492 32 1 2.3166 1.3281 2.1393 33 1 4.6604 2.3525 2.9877 34 1 5.8971 4.3107 1.3707 35 1 4.5620 5.0800 2.2619 36 1 6.6991 3.4107 3.7019 37 1 4.5713 5.5243 4.5015 38 1 5.1701 4.1169 5.4821 39 1 7.4086 5.0961 5.6870 40 1 6.1677 7.7065 4.9543 41 1 5.8899 10.4343 6.8540 42 1 8.0794 5.4048 3.3501 43 1 6.6233 6.4327 2.9978 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100285869.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:26 Heat of formation + Delta-G solvation = -39.505336 kcal Electronic energy + Delta-G solvation = -21796.978304 eV Core-core repulsion = 18457.598015 eV Total energy + Delta-G solvation = -3339.380290 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.27022 -38.78471 -37.83433 -34.62990 -33.32482 -33.22582 -31.58346 -30.30913 -28.73557 -26.68629 -25.09369 -23.91184 -22.96054 -21.03244 -20.49941 -19.92810 -19.04298 -17.54418 -17.04897 -16.57954 -16.32030 -15.75315 -15.40814 -14.79018 -14.74384 -14.58901 -13.90271 -13.62002 -13.37613 -13.10470 -12.92143 -12.52869 -12.38842 -12.05081 -11.86668 -11.79933 -11.69585 -11.38622 -11.32429 -11.22426 -10.82559 -10.53223 -10.44977 -10.21696 -10.14379 -9.83261 -9.81307 -9.64836 -9.41391 -8.96158 -8.86601 -6.97002 -5.78601 -3.07633 1.83617 2.64385 3.15973 3.42566 3.46923 3.48250 4.01307 4.38875 4.43253 4.57765 4.68634 4.86168 4.90041 4.98541 5.07499 5.17410 5.24396 5.36936 5.45592 5.46257 5.51464 5.64647 5.80667 5.83349 5.87078 5.94392 6.08906 6.11189 6.20081 6.28082 6.32063 6.35428 6.37730 6.51401 6.59172 6.82847 7.10971 7.46932 7.50677 7.67695 8.26403 8.39952 9.50787 10.09250 10.43436 11.43711 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034394 B = 0.002551 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.898754 B =10972.229110 C =11210.317615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.188 4.188 3 C 0.177 3.823 4 C -0.148 4.148 5 O -0.538 6.538 6 C -0.167 4.167 7 C 0.509 3.491 8 O -0.520 6.520 9 N -0.729 5.729 10 C 0.133 3.867 11 C -0.127 4.127 12 C -0.161 4.161 13 C 0.166 3.834 14 N -0.713 5.713 15 C -0.245 4.245 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.932 5.932 19 Si 0.908 3.092 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.142 4.142 24 H 0.105 0.895 25 H 0.099 0.901 26 H 0.115 0.885 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.369 0.631 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.398 0.602 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.061 0.939 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.660 -21.693 -11.863 25.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.206 4.206 3 C 0.135 3.865 4 C -0.204 4.204 5 O -0.343 6.343 6 C -0.207 4.207 7 C 0.294 3.706 8 O -0.396 6.396 9 N -0.381 5.381 10 C 0.010 3.990 11 C -0.146 4.146 12 C -0.202 4.202 13 C 0.054 3.946 14 N -0.350 5.350 15 C -0.376 4.376 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.580 5.580 19 Si 0.739 3.261 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.182 4.182 24 H 0.123 0.877 25 H 0.118 0.882 26 H 0.133 0.867 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.113 0.887 30 H 0.216 0.784 31 H 0.119 0.881 32 H 0.113 0.887 33 H 0.232 0.768 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.404 -20.891 -12.886 25.367 hybrid contribution -0.253 -0.177 1.791 1.818 sum -6.657 -21.069 -11.094 24.724 Atomic orbital electron populations 1.23887 0.96064 1.02446 0.99354 1.23624 0.96770 0.98789 1.01433 1.19841 0.88032 0.84043 0.94540 1.21940 0.98861 1.04316 0.95317 1.86739 1.50059 1.48829 1.48631 1.22402 1.00524 0.97073 1.00717 1.20397 0.79602 0.88372 0.82203 1.90695 1.63782 1.49862 1.35221 1.46103 1.45174 1.21622 1.25166 1.21406 0.94319 0.85274 0.98043 1.22633 0.98248 0.98824 0.94920 1.23969 1.00811 0.99915 0.95517 1.21546 0.93867 0.87749 0.91471 1.42405 1.78948 1.05562 1.08129 1.19253 1.38021 0.94446 0.85918 0.91171 1.24775 1.02125 0.96079 0.97944 1.69651 1.52145 1.02260 1.33953 0.86261 0.77899 0.77112 0.84865 1.21231 1.21669 1.21259 1.23440 0.98512 0.96171 1.00093 0.87654 0.88232 0.86679 0.91952 0.92226 0.88683 0.78416 0.88136 0.88716 0.76836 0.91905 0.91316 0.89483 0.90391 0.92847 0.90733 0.78054 0.93373 0.92023 0.90108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.20 13.93 29.01 0.40 -0.80 16 2 C -0.19 -1.33 8.77 -36.03 -0.32 -1.65 16 3 C 0.18 1.62 0.94 -91.77 -0.09 1.53 16 4 C -0.15 -1.50 8.51 37.16 0.32 -1.18 16 5 O -0.54 -5.98 10.84 -53.51 -0.58 -6.56 16 6 C -0.17 -1.32 4.93 -27.88 -0.14 -1.46 16 7 C 0.51 5.98 7.39 -10.99 -0.08 5.89 16 8 O -0.52 -8.27 12.96 -12.73 -0.16 -8.43 16 9 N -0.73 -7.82 5.56 -60.29 -0.33 -8.16 16 10 C 0.13 1.73 5.50 -4.04 -0.02 1.70 16 11 C -0.13 -1.67 3.75 -89.81 -0.34 -2.00 16 12 C -0.16 -2.63 7.45 -25.83 -0.19 -2.82 16 13 C 0.17 3.19 4.48 -67.03 -0.30 2.89 16 14 N -0.71 -17.79 5.41 -52.55 -0.28 -18.07 16 15 C -0.25 -6.78 9.97 -15.06 -0.15 -6.93 16 16 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 17 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 18 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 19 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 C -0.14 -2.26 7.39 -25.93 -0.19 -2.45 16 24 H 0.11 0.71 6.41 -52.49 -0.34 0.38 16 25 H 0.10 0.53 8.06 -52.49 -0.42 0.11 16 26 H 0.12 0.65 8.06 -52.48 -0.42 0.23 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.09 1.24 5.51 -51.93 -0.29 0.95 16 30 H 0.37 2.87 8.05 45.56 0.37 3.24 16 31 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.40 3.24 8.47 -40.82 -0.35 2.89 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 1.04 7.87 -51.93 -0.41 0.64 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.08 1.42 7.92 -51.93 -0.41 1.01 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 1.42 8.10 -51.93 -0.42 0.99 16 40 H 0.39 10.27 7.92 -40.82 -0.32 9.95 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.08 1.36 8.08 -51.93 -0.42 0.94 16 LS Contribution 352.93 15.07 5.32 5.32 Total: -1.00 -33.38 352.93 -7.89 -41.27 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -6.36 Total: 12.63 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -1.19 Total: -7.74 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.11 Total: -53.74 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.75 Total: -15.00 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.38 -7.89 -41.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100285869.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.765 kcal (2) G-P(sol) polarization free energy of solvation -33.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds