Wall clock time and date at job start Tue Mar 31 2020 05:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50709 * 119.99617 * 2 1 4 4 C 1.53000 * 109.46851 * 119.99801 * 3 2 1 5 5 O 1.42896 * 109.46975 * 359.97438 * 3 2 1 6 6 C 1.52991 * 109.46789 * 239.99972 * 3 2 1 7 7 C 1.50694 * 109.47597 * 60.12757 * 6 3 2 8 8 O 1.21285 * 119.99997 * 354.31311 * 7 6 3 9 9 N 1.34777 * 120.00371 * 174.30726 * 7 6 3 10 10 C 1.46499 * 120.00132 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47251 * 180.02562 * 10 9 7 12 12 C 1.53777 * 113.61595 * 175.00167 * 11 10 9 13 13 C 1.53780 * 87.08017 * 139.98251 * 12 11 10 14 14 N 1.46502 * 113.61301 * 219.93281 * 13 12 11 15 15 C 1.36936 * 120.00234 * 203.47051 * 14 13 12 16 16 H 1.08007 * 119.99573 * 0.02562 * 15 14 13 17 17 C 1.38803 * 120.00442 * 180.02562 * 15 14 13 18 18 N 1.31617 * 119.99922 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 120.00291 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46845 * 89.99774 * 19 17 15 21 21 H 1.48493 * 109.47010 * 209.99883 * 19 17 15 22 22 H 1.48500 * 109.47031 * 330.00037 * 19 17 15 23 23 C 1.53778 * 87.17506 * 334.52509 * 13 12 11 24 24 H 1.07994 * 119.99929 * 0.02562 * 1 2 3 25 25 H 1.07995 * 119.99785 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.00242 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.46813 * 184.93174 * 4 3 2 28 28 H 1.08995 * 109.47175 * 304.93371 * 4 3 2 29 29 H 1.08999 * 109.46964 * 64.93871 * 4 3 2 30 30 H 0.96699 * 114.00247 * 299.99955 * 5 3 2 31 31 H 1.09003 * 109.47782 * 300.12427 * 6 3 2 32 32 H 1.09009 * 109.47073 * 180.12641 * 6 3 2 33 33 H 0.96998 * 119.99938 * 0.02562 * 9 7 6 34 34 H 1.09003 * 109.47064 * 60.00603 * 10 9 7 35 35 H 1.08994 * 109.47577 * 300.00324 * 10 9 7 36 36 H 1.09003 * 112.84693 * 43.81028 * 11 10 9 37 37 H 1.08999 * 113.61421 * 25.43394 * 12 11 10 38 38 H 1.09006 * 113.61486 * 254.53334 * 12 11 10 39 39 H 1.09003 * 113.61151 * 89.12106 * 13 12 11 40 40 H 0.97002 * 120.00245 * 23.48003 * 14 13 12 41 41 H 0.97005 * 120.00351 * 180.02562 * 18 17 15 42 42 H 1.09001 * 113.61179 * 140.01949 * 23 13 12 43 43 H 1.08997 * 113.61529 * 270.93071 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.9431 1.3863 1.2493 5 8 1.1348 2.3913 -0.0006 6 6 2.9430 1.3862 -1.2492 7 6 2.0765 1.3095 -2.4797 8 8 0.8872 1.0974 -2.3716 9 7 2.6229 1.4766 -3.7003 10 6 1.7805 1.4014 -4.8965 11 6 2.6416 1.6239 -6.1415 12 6 1.8738 1.4442 -7.4617 13 6 2.6550 2.6588 -7.9902 14 7 1.8455 3.5676 -8.8057 15 6 2.4498 4.3913 -9.7176 16 1 3.5231 4.3707 -9.8358 17 6 1.6829 5.2528 -10.4899 18 7 0.3749 5.2782 -10.3455 19 14 2.5072 6.3760 -11.7343 20 1 2.5982 5.6816 -13.0438 21 1 1.7069 7.6175 -11.8868 22 1 3.8718 6.7216 -11.2614 23 6 2.7987 3.1073 -6.5263 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5399 -0.9353 -0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 3.4205 2.3651 1.2946 28 1 2.3276 1.2408 2.1370 29 1 3.7078 0.6108 1.2062 30 1 0.5438 2.4030 -0.7659 31 1 3.6500 0.5566 -1.2504 32 1 3.4898 2.3293 -1.2481 33 1 3.5741 1.6460 -3.7868 34 1 1.0086 2.1695 -4.8462 35 1 1.3122 0.4187 -4.9500 36 1 3.5845 1.0782 -6.1070 37 1 0.8019 1.6203 -7.3709 38 1 2.1086 0.5146 -7.9803 39 1 3.6023 2.3971 -8.4617 40 1 0.8815 3.5859 -8.6997 41 1 -0.1611 5.8800 -10.8855 42 1 3.7797 3.5195 -6.2903 43 1 1.9792 3.7372 -6.1802 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100285870.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:30 Heat of formation + Delta-G solvation = -43.477473 kcal Electronic energy + Delta-G solvation = -21944.990217 eV Core-core repulsion = 18605.437682 eV Total energy + Delta-G solvation = -3339.552534 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.42129 -38.79327 -37.67913 -34.69457 -33.34710 -33.10373 -31.52539 -30.31259 -28.90098 -26.75193 -25.12205 -23.88702 -22.65972 -21.08771 -20.76812 -19.73902 -19.07500 -17.36852 -17.08843 -16.95082 -16.30189 -15.83432 -15.30341 -14.76821 -14.71742 -14.47360 -13.83473 -13.54805 -13.48811 -13.01383 -12.83292 -12.70820 -12.42294 -12.22216 -11.94213 -11.88334 -11.79754 -11.40223 -11.25977 -11.19058 -10.86123 -10.56317 -10.37277 -10.23640 -10.17208 -9.99425 -9.84520 -9.54846 -9.22302 -9.04810 -8.88832 -6.98389 -5.80030 -3.09097 2.25728 2.50739 3.08411 3.41371 3.46457 3.48383 4.04952 4.44729 4.50617 4.56599 4.60623 4.92544 4.95267 5.07927 5.11236 5.19639 5.21602 5.27726 5.44462 5.46915 5.52340 5.54881 5.78660 5.80658 5.84395 5.89817 5.90925 6.06623 6.21571 6.27592 6.32761 6.41034 6.51374 6.56197 6.71318 6.79443 7.08478 7.38584 7.54808 7.67089 8.10994 8.38514 9.49535 10.07653 10.41775 11.42368 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034821 B = 0.002622 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.914457 B =10678.205218 C =10742.833878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.192 4.192 3 C 0.178 3.822 4 C -0.135 4.135 5 O -0.562 6.562 6 C -0.169 4.169 7 C 0.510 3.490 8 O -0.540 6.540 9 N -0.723 5.723 10 C 0.132 3.868 11 C -0.128 4.128 12 C -0.142 4.142 13 C 0.166 3.834 14 N -0.713 5.713 15 C -0.244 4.244 16 H 0.071 0.929 17 C -0.013 4.013 18 N -0.932 5.932 19 Si 0.907 3.093 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.282 1.282 23 C -0.161 4.161 24 H 0.101 0.899 25 H 0.092 0.908 26 H 0.107 0.893 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.386 0.614 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.400 0.600 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.053 0.947 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.788 -11.552 20.763 24.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.210 4.210 3 C 0.136 3.864 4 C -0.192 4.192 5 O -0.372 6.372 6 C -0.209 4.209 7 C 0.297 3.703 8 O -0.419 6.419 9 N -0.374 5.374 10 C 0.009 3.991 11 C -0.147 4.147 12 C -0.181 4.181 13 C 0.054 3.946 14 N -0.351 5.351 15 C -0.376 4.376 16 H 0.089 0.911 17 C -0.209 4.209 18 N -0.580 5.580 19 Si 0.738 3.262 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.207 1.207 23 C -0.202 4.202 24 H 0.119 0.881 25 H 0.111 0.889 26 H 0.125 0.875 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.239 0.761 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.234 0.766 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.314 -11.432 21.208 24.907 hybrid contribution 0.333 0.495 -1.362 1.487 sum 6.647 -10.937 19.846 23.615 Atomic orbital electron populations 1.23634 0.95992 1.01710 0.97187 1.23208 0.96810 0.97664 1.03315 1.19789 0.88131 0.85362 0.93101 1.21708 0.98700 1.02597 0.96179 1.86434 1.50969 1.48720 1.51080 1.22457 0.99787 1.05215 0.93461 1.20613 0.88849 0.76135 0.84715 1.90671 1.15891 1.48723 1.86572 1.46110 1.12526 1.72625 1.06146 1.21438 0.93311 1.01776 0.82608 1.22690 0.98986 0.99566 0.93448 1.23424 1.00237 1.00002 0.94483 1.21517 0.94569 0.89328 0.89233 1.42415 1.06101 1.43441 1.43168 1.19292 0.91909 1.13838 1.12522 0.91118 1.24773 0.95480 1.00337 1.00334 1.69660 1.03655 1.41291 1.43408 0.86188 0.78264 0.80246 0.81478 1.21677 1.21740 1.20742 1.23995 1.01159 0.93536 1.01478 0.88053 0.88932 0.87490 0.91562 0.91522 0.91080 0.76121 0.87964 0.88070 0.76604 0.91183 0.91823 0.89445 0.90100 0.92008 0.90777 0.78064 0.93421 0.92788 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 12.60 29.01 0.37 -1.21 16 2 C -0.19 -1.89 7.47 -36.02 -0.27 -2.16 16 3 C 0.18 1.67 1.08 -91.77 -0.10 1.57 16 4 C -0.13 -0.99 8.83 37.16 0.33 -0.66 16 5 O -0.56 -6.68 11.92 -51.77 -0.62 -7.29 16 6 C -0.17 -1.35 4.97 -27.89 -0.14 -1.49 16 7 C 0.51 5.62 7.31 -10.99 -0.08 5.54 16 8 O -0.54 -7.53 11.96 -10.98 -0.13 -7.66 16 9 N -0.72 -7.39 5.56 -60.30 -0.33 -7.73 16 10 C 0.13 1.64 5.51 -4.04 -0.02 1.61 16 11 C -0.13 -1.63 3.76 -89.66 -0.34 -1.97 16 12 C -0.14 -2.20 7.39 -25.92 -0.19 -2.40 16 13 C 0.17 3.15 4.47 -67.12 -0.30 2.85 16 14 N -0.71 -17.68 5.41 -52.64 -0.28 -17.97 16 15 C -0.24 -6.73 9.97 -15.06 -0.15 -6.88 16 16 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 17 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 18 N -0.93 -28.13 13.06 55.49 0.72 -27.41 16 19 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C -0.16 -2.59 7.45 -25.78 -0.19 -2.78 16 24 H 0.10 1.15 6.41 -52.49 -0.34 0.82 16 25 H 0.09 0.88 8.06 -52.49 -0.42 0.45 16 26 H 0.11 0.90 8.06 -52.49 -0.42 0.48 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.39 4.74 5.78 45.56 0.26 5.00 16 31 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 33 H 0.40 3.13 8.47 -40.82 -0.35 2.79 16 34 H 0.07 1.01 7.85 -51.93 -0.41 0.60 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.40 8.11 -51.93 -0.42 0.98 16 40 H 0.39 10.19 7.91 -40.82 -0.32 9.87 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.08 1.41 7.90 -51.93 -0.41 1.00 16 LS Contribution 351.12 15.07 5.29 5.29 Total: -1.00 -31.77 351.12 -8.15 -39.93 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -6.60 Total: 14.08 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -1.18 Total: -8.45 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: 0.10 Total: -53.10 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.75 Total: -14.96 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.77 -8.15 -39.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100285870.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.550 kcal (2) G-P(sol) polarization free energy of solvation -31.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds