Wall clock time and date at job start Tue Mar 31 2020 05:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50696 * 120.00132 * 2 1 4 4 C 1.52994 * 109.47168 * 125.00115 * 3 2 1 5 5 O 1.42906 * 109.46970 * 180.02562 * 4 3 2 6 6 C 1.42899 * 114.00097 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47490 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99626 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00066 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00059 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47425 * 180.02562 * 10 9 7 12 12 C 1.53781 * 113.61609 * 175.00005 * 11 10 9 13 13 C 1.53781 * 87.08070 * 139.98229 * 12 11 10 14 14 N 1.46497 * 113.61305 * 219.93536 * 13 12 11 15 15 C 1.36944 * 119.99791 * 203.46713 * 14 13 12 16 16 H 1.07993 * 120.00042 * 0.02562 * 15 14 13 17 17 C 1.38812 * 119.99770 * 179.97438 * 15 14 13 18 18 N 1.31615 * 119.99762 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 120.00190 * 0.02562 * 17 15 14 20 20 H 1.48491 * 109.47113 * 89.99658 * 19 17 15 21 21 H 1.48503 * 109.46988 * 209.99850 * 19 17 15 22 22 H 1.48501 * 109.46739 * 329.99844 * 19 17 15 23 23 C 1.53786 * 87.17350 * 334.52830 * 13 12 11 24 24 H 1.08006 * 120.00161 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.00572 * 180.02562 * 1 2 3 26 26 H 1.07997 * 119.99561 * 180.02562 * 2 1 3 27 27 H 1.09005 * 109.47268 * 4.99509 * 3 2 1 28 28 H 1.09006 * 109.47272 * 245.00204 * 3 2 1 29 29 H 1.08994 * 109.47548 * 60.00292 * 4 3 2 30 30 H 1.09000 * 109.47489 * 299.99610 * 4 3 2 31 31 H 1.09005 * 109.47557 * 59.99302 * 6 5 4 32 32 H 1.09006 * 109.46925 * 300.00023 * 6 5 4 33 33 H 0.96996 * 120.00586 * 0.02562 * 9 7 6 34 34 H 1.08997 * 109.47114 * 60.00231 * 10 9 7 35 35 H 1.09006 * 109.47306 * 300.00712 * 10 9 7 36 36 H 1.08996 * 112.84723 * 43.80825 * 11 10 9 37 37 H 1.08999 * 113.61181 * 25.43284 * 12 11 10 38 38 H 1.08998 * 113.61680 * 254.52836 * 12 11 10 39 39 H 1.09002 * 113.61445 * 89.11830 * 13 12 11 40 40 H 0.96995 * 120.00146 * 23.47603 * 14 13 12 41 41 H 0.97005 * 119.99972 * 180.02562 * 18 17 15 42 42 H 1.08992 * 113.61675 * 140.02412 * 23 13 12 43 43 H 1.09000 * 113.60973 * 270.92699 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3330 1.1816 5 8 3.7491 2.5709 1.1819 6 6 4.6886 2.6996 2.2509 7 6 5.3806 4.0348 2.1535 8 8 5.0968 4.8008 1.2571 9 7 6.3141 4.3779 3.0630 10 6 6.9864 5.6761 2.9686 11 6 7.9924 5.8139 4.1132 12 6 8.8415 7.0938 4.0363 13 6 8.6824 7.1968 5.5624 14 7 8.4699 8.5656 6.0391 15 6 8.7835 8.8975 7.3302 16 1 9.1879 8.1502 7.9968 17 6 8.5826 10.1946 7.7818 18 7 8.8844 10.5136 9.0225 19 14 7.8838 11.4874 6.6285 20 1 6.4021 11.4888 6.7261 21 1 8.4062 12.8244 7.0090 22 1 8.2878 11.1767 5.2337 23 6 7.3825 6.3904 5.4049 24 1 -0.5401 0.9353 0.0004 25 1 -0.5401 -0.9353 0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.3585 2.1317 0.0895 28 1 2.6213 1.4026 -0.9314 29 1 3.7399 0.5066 1.0920 30 1 2.4773 1.2356 2.1130 31 1 5.4281 1.9017 2.1829 32 1 4.1655 2.6298 3.2047 33 1 6.5408 3.7654 3.7801 34 1 6.2469 6.4740 3.0364 35 1 7.5097 5.7458 2.0149 36 1 8.5795 4.9094 4.2718 37 1 8.3595 7.9054 3.4912 38 1 9.8682 6.9180 3.7152 39 1 9.4581 6.6705 6.1187 40 1 8.1069 9.2369 5.4403 41 1 8.7437 11.4200 9.3382 42 1 7.2321 5.6473 6.1880 43 1 6.5024 7.0102 5.2334 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101053221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:16 Heat of formation + Delta-G solvation = -35.799857 kcal Electronic energy + Delta-G solvation = -20937.194543 eV Core-core repulsion = 17597.974935 eV Total energy + Delta-G solvation = -3339.219608 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.00799 -38.76911 -37.95839 -35.39836 -34.77604 -33.35445 -30.90238 -30.33089 -28.67410 -26.46740 -25.22613 -23.63525 -23.37683 -21.02110 -20.87238 -20.21728 -19.32845 -17.48276 -17.33240 -17.13297 -16.84834 -15.81076 -15.68811 -15.29815 -14.86708 -14.66086 -14.36679 -14.02445 -13.79500 -13.44655 -13.20018 -12.74425 -12.69660 -12.23650 -12.00472 -11.95247 -11.65600 -11.62548 -11.55700 -11.51622 -10.91379 -10.51100 -10.37380 -10.15727 -10.09372 -9.91939 -9.84340 -9.77077 -9.55946 -9.13267 -8.90803 -7.28711 -5.80075 -3.15659 1.76415 2.47326 2.61629 3.36790 3.40112 3.44776 3.66673 4.45945 4.51635 4.56948 4.62890 4.72011 4.76591 4.82765 4.85784 4.88788 4.91297 4.98978 5.08731 5.36892 5.38225 5.39035 5.51104 5.58785 5.63269 5.70455 5.77169 5.83271 6.14618 6.15194 6.15246 6.20795 6.27467 6.33358 6.47434 6.64925 6.68279 6.95805 7.35821 7.96287 8.09000 8.39729 9.17657 9.90482 10.10177 11.38074 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033304 B = 0.002192 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.550658 B =12768.889141 C =12992.386947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.155 4.155 3 C -0.094 4.094 4 C 0.065 3.935 5 O -0.364 6.364 6 C 0.045 3.955 7 C 0.510 3.490 8 O -0.522 6.522 9 N -0.724 5.724 10 C 0.133 3.867 11 C -0.127 4.127 12 C -0.145 4.145 13 C 0.171 3.829 14 N -0.738 5.738 15 C -0.249 4.249 16 H 0.091 0.909 17 C 0.005 3.995 18 N -0.933 5.933 19 Si 0.884 3.116 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.276 1.276 23 C -0.161 4.161 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.110 0.890 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.401 0.599 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.363 0.637 41 H 0.260 0.740 42 H 0.059 0.941 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.423 -22.830 -15.950 29.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.173 4.173 3 C -0.131 4.131 4 C -0.012 4.012 5 O -0.283 6.283 6 C -0.035 4.035 7 C 0.295 3.705 8 O -0.397 6.397 9 N -0.378 5.378 10 C 0.010 3.990 11 C -0.146 4.146 12 C -0.184 4.184 13 C 0.060 3.940 14 N -0.377 5.377 15 C -0.379 4.379 16 H 0.109 0.891 17 C -0.191 4.191 18 N -0.580 5.580 19 Si 0.714 3.286 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.203 1.203 23 C -0.202 4.202 24 H 0.117 0.883 25 H 0.117 0.883 26 H 0.128 0.872 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.235 0.765 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.196 0.804 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.570 -22.066 -16.483 29.502 hybrid contribution -0.387 0.407 -0.110 0.572 sum -10.957 -21.660 -16.593 29.403 Atomic orbital electron populations 1.23932 0.95910 1.02151 1.00350 1.22791 0.96027 0.97927 1.00589 1.20642 0.97965 0.95988 0.98505 1.22503 0.94020 0.85977 0.98686 1.88002 1.54335 1.37463 1.48452 1.22198 0.93198 0.95984 0.92112 1.20225 0.79933 0.88174 0.82216 1.90741 1.62985 1.52328 1.33667 1.45923 1.40883 1.20409 1.30560 1.21443 0.94664 0.84050 0.98815 1.22692 0.97475 0.98766 0.95659 1.23449 0.99127 0.96054 0.99818 1.21509 0.94692 0.86494 0.91318 1.42765 1.76923 1.06420 1.11622 1.19134 1.36034 0.95931 0.86781 0.89146 1.24696 1.01193 0.97105 0.96096 1.69702 1.53852 1.19395 1.15062 0.86555 0.79180 0.82104 0.80737 1.21035 1.21682 1.20261 1.23965 1.01100 0.99961 0.95130 0.88339 0.88255 0.87157 0.90414 0.89911 0.92971 0.92930 0.90280 0.90156 0.76496 0.91217 0.91616 0.89032 0.90290 0.91587 0.89892 0.80434 0.93025 0.92254 0.90405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.03 14.32 29.02 0.42 -0.61 16 2 C -0.16 -0.90 9.52 -36.03 -0.34 -1.25 16 3 C -0.09 -0.67 6.03 -27.89 -0.17 -0.84 16 4 C 0.06 0.48 5.92 37.15 0.22 0.70 16 5 O -0.36 -4.03 9.88 -55.14 -0.54 -4.57 16 6 C 0.05 0.39 6.42 36.00 0.23 0.62 16 7 C 0.51 6.25 7.91 -10.99 -0.09 6.16 16 8 O -0.52 -9.01 16.50 -14.36 -0.24 -9.25 16 9 N -0.72 -7.40 5.56 -60.29 -0.33 -7.73 16 10 C 0.13 1.61 5.51 -4.04 -0.02 1.59 16 11 C -0.13 -1.52 3.76 -89.67 -0.34 -1.86 16 12 C -0.14 -2.10 7.39 -25.92 -0.19 -2.29 16 13 C 0.17 3.10 4.47 -67.12 -0.30 2.80 16 14 N -0.74 -17.13 5.21 -52.64 -0.27 -17.40 16 15 C -0.25 -6.94 10.45 -15.06 -0.16 -7.10 16 16 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 17 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 18 N -0.93 -29.14 13.97 55.49 0.78 -28.37 16 19 Si 0.88 22.11 27.74 -169.99 -4.71 17.40 16 20 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 22 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 23 C -0.16 -2.44 7.45 -25.77 -0.19 -2.63 16 24 H 0.10 0.53 7.84 -52.48 -0.41 0.12 16 25 H 0.10 0.43 8.06 -52.49 -0.42 0.01 16 26 H 0.11 0.51 8.06 -52.49 -0.42 0.09 16 27 H 0.08 0.61 7.79 -51.93 -0.40 0.20 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.40 2.87 8.47 -40.82 -0.35 2.52 16 34 H 0.07 0.97 7.85 -51.93 -0.41 0.57 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 1.51 8.11 -51.93 -0.42 1.09 16 40 H 0.36 8.34 5.77 -40.82 -0.24 8.11 16 41 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.08 1.29 7.90 -51.93 -0.41 0.88 16 LS Contribution 361.79 15.07 5.45 5.45 Total: -1.00 -34.80 361.79 -8.20 -43.00 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -7.30 Total: 6.13 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -1.03 Total: -4.66 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.17 Total: -53.50 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.78 Total: -13.82 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.71 Total: 17.40 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.80 -8.20 -43.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101053221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.201 kcal (2) G-P(sol) polarization free energy of solvation -34.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds