Wall clock time and date at job start Tue Mar 31 2020 05:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99821 * 2 1 4 4 C 1.53003 * 109.46765 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47055 * 300.00028 * 4 3 2 6 6 C 1.53002 * 109.47265 * 60.00111 * 4 3 2 7 7 C 1.50700 * 109.47249 * 180.02562 * 4 3 2 8 8 O 1.21285 * 119.99770 * 359.97438 * 7 4 3 9 9 N 1.34772 * 120.00057 * 180.02562 * 7 4 3 10 10 C 1.46506 * 119.99711 * 180.02562 * 9 7 4 11 11 H 1.08997 * 115.51854 * 350.41404 * 10 9 7 12 12 C 1.53003 * 117.44074 * 204.99516 * 10 9 7 13 13 H 1.08997 * 119.53694 * 4.11651 * 12 10 9 14 14 C 1.54384 * 118.12386 * 159.21473 * 12 10 9 15 15 N 1.51825 * 102.86819 * 88.01879 * 14 12 10 16 16 C 1.36932 * 127.61001 * 140.54726 * 15 14 12 17 17 H 1.07997 * 120.00076 * 194.64825 * 16 15 14 18 18 C 1.38817 * 120.00283 * 14.65049 * 16 15 14 19 19 N 1.31617 * 119.99779 * 9.02063 * 18 16 15 20 20 Si 1.86796 * 120.00184 * 189.01706 * 18 16 15 21 21 H 1.48507 * 109.47217 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47150 * 119.99800 * 20 18 16 23 23 H 1.48497 * 109.47179 * 239.99804 * 20 18 16 24 24 C 1.48152 * 104.55130 * 320.27115 * 15 14 12 25 25 C 1.53002 * 117.44233 * 135.75676 * 10 9 7 26 26 H 1.09007 * 119.54026 * 355.87843 * 25 10 9 27 27 H 1.09003 * 109.47222 * 59.99739 * 1 2 3 28 28 H 1.09000 * 109.47159 * 300.00165 * 1 2 3 29 29 H 1.09002 * 109.47598 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47141 * 299.99577 * 3 2 1 31 31 H 1.08999 * 109.47351 * 60.00093 * 3 2 1 32 32 H 1.08995 * 109.47051 * 60.00641 * 5 4 3 33 33 H 1.09002 * 109.46930 * 179.97438 * 5 4 3 34 34 H 1.08999 * 109.47010 * 299.99979 * 5 4 3 35 35 H 1.09001 * 109.47040 * 59.99966 * 6 4 3 36 36 H 1.08997 * 109.47149 * 179.97438 * 6 4 3 37 37 H 1.08998 * 109.46990 * 300.00291 * 6 4 3 38 38 H 0.96997 * 120.00584 * 359.97438 * 9 7 4 39 39 H 1.08998 * 110.41275 * 205.97994 * 14 12 10 40 40 H 1.09006 * 110.40225 * 328.40459 * 14 12 10 41 41 H 0.97000 * 120.00415 * 180.02562 * 19 18 16 42 42 H 1.08998 * 110.40789 * 281.07830 * 24 15 14 43 43 H 1.08997 * 110.50488 * 158.69603 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 3.9873 0.4251 1.2483 6 6 3.9864 0.4256 -1.2502 7 6 4.1484 2.5613 0.0000 8 8 3.4356 3.5425 0.0004 9 7 5.4888 2.7021 -0.0009 10 6 6.0847 4.0405 0.0002 11 1 5.3895 4.8642 -0.1620 12 6 7.4953 4.1848 -0.5745 13 1 7.9837 3.3199 -1.0234 14 6 7.9533 5.5850 -1.0361 15 7 8.5324 6.1864 0.2320 16 6 9.6525 6.9650 0.3518 17 1 10.0911 7.1341 1.3241 18 6 10.2241 7.5370 -0.7765 19 7 9.5967 7.4815 -1.9321 20 14 11.8837 8.3856 -0.6546 21 1 12.3757 8.3121 0.7447 22 1 12.8519 7.7112 -1.5563 23 1 11.7427 9.8086 -1.0550 24 6 7.6113 5.7478 1.3063 25 6 7.2609 4.2878 0.9470 26 1 7.5748 3.4997 1.6315 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6886 1.8463 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 3.5441 -0.5707 1.2482 33 1 5.0739 0.3386 1.2476 34 1 3.6661 0.9658 2.1385 35 1 3.6644 0.9667 -2.1400 36 1 5.0730 0.3399 -1.2509 37 1 3.5430 -0.5702 -1.2503 38 1 6.0590 1.9174 -0.0016 39 1 8.7219 5.4995 -1.8042 40 1 7.1047 6.1588 -1.4086 41 1 9.9963 7.8808 -2.7207 42 1 6.7124 6.3642 1.3113 43 1 8.1071 5.7921 2.2760 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114568947.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:20 Heat of formation + Delta-G solvation = -27.422652 kcal Electronic energy + Delta-G solvation = -22438.180798 eV Core-core repulsion = 19099.324453 eV Total energy + Delta-G solvation = -3338.856345 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.37857 -38.66566 -37.79026 -35.02925 -34.31685 -32.48172 -30.12802 -27.65277 -27.55910 -27.14277 -25.83846 -25.67009 -23.27072 -21.33950 -20.45226 -19.33982 -19.14547 -17.25887 -16.88040 -16.49694 -16.11622 -15.82244 -15.29775 -14.88553 -14.66866 -14.21058 -13.66335 -13.50975 -13.41533 -13.18755 -12.74387 -12.45327 -12.38100 -12.17924 -12.07968 -11.75682 -11.54316 -11.46815 -11.27738 -11.00499 -10.95136 -10.84698 -10.43862 -10.20651 -10.12464 -9.89716 -9.72990 -9.64466 -9.19737 -8.75352 -8.34826 -6.87924 -5.78896 -3.11960 2.59435 2.90811 3.38239 3.44205 3.46722 3.69619 4.29305 4.38051 4.47279 4.60036 4.64166 4.93687 5.07847 5.08042 5.14754 5.34051 5.36275 5.37058 5.38427 5.39165 5.44006 5.54277 5.60019 5.61925 5.69439 5.78624 5.88991 5.97317 6.00436 6.14554 6.22361 6.52535 6.68978 6.78410 6.87058 6.88895 7.30037 7.51131 7.55234 7.70059 8.14543 8.23666 9.06483 9.73073 10.49706 11.36149 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.049973 B = 0.002950 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.167635 B = 9489.631601 C = 9547.370448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.085 3.915 4 C -0.079 4.079 5 C -0.136 4.136 6 C -0.137 4.137 7 C 0.528 3.472 8 O -0.540 6.540 9 N -0.692 5.692 10 C 0.094 3.906 11 H 0.131 0.869 12 C -0.177 4.177 13 H 0.102 0.898 14 C 0.185 3.815 15 N -0.598 5.598 16 C -0.223 4.223 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.917 5.917 20 Si 0.912 3.088 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.158 3.842 25 C -0.182 4.182 26 H 0.103 0.897 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.399 0.601 39 H 0.093 0.907 40 H 0.032 0.968 41 H 0.254 0.746 42 H 0.026 0.974 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.680 -17.151 3.363 22.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C 0.008 3.992 4 C -0.083 4.083 5 C -0.194 4.194 6 C -0.194 4.194 7 C 0.313 3.687 8 O -0.417 6.417 9 N -0.340 5.340 10 C -0.012 4.012 11 H 0.149 0.851 12 C -0.198 4.198 13 H 0.120 0.880 14 C 0.060 3.940 15 N -0.323 5.323 16 C -0.352 4.352 17 H 0.095 0.905 18 C -0.205 4.205 19 N -0.563 5.563 20 Si 0.743 3.257 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.032 3.968 25 C -0.204 4.204 26 H 0.121 0.879 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.233 0.767 39 H 0.111 0.889 40 H 0.050 0.950 41 H 0.064 0.936 42 H 0.043 0.957 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.887 -16.431 3.244 21.757 hybrid contribution 0.975 0.222 0.009 1.000 sum -12.912 -16.209 3.253 20.977 Atomic orbital electron populations 1.22721 0.80870 1.02569 1.00185 1.87783 1.19682 1.27855 1.95529 1.22223 0.91140 0.84084 1.01714 1.20708 0.95113 0.93355 0.99088 1.21800 1.01280 1.00966 0.95348 1.21805 1.01331 1.00962 0.95349 1.20257 0.82314 0.90480 0.75612 1.90708 1.60924 1.40535 1.49509 1.45334 1.06262 1.08409 1.73999 1.21897 0.90237 0.85194 1.03843 0.85103 1.24586 0.95800 1.02500 0.96938 0.88035 1.21707 0.96949 0.85016 0.90285 1.46075 1.26530 1.58256 1.01449 1.19061 1.00095 1.21948 0.94055 0.90475 1.24874 0.99516 0.99921 0.96165 1.69890 1.37672 1.49252 0.99531 0.86043 0.83428 0.78887 0.77375 1.20417 1.21671 1.21728 1.21054 0.93315 0.89496 0.92975 1.24383 1.01628 1.00506 0.93845 0.87920 0.94025 0.94041 0.89647 0.92337 0.92368 0.90516 0.92097 0.92132 0.92070 0.92048 0.90514 0.76668 0.88925 0.95007 0.93628 0.95656 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -3.88 9.35 -35.23 -0.33 -4.21 16 3 C 0.09 0.93 4.09 37.16 0.15 1.09 16 4 C -0.08 -0.84 0.70 -155.66 -0.11 -0.95 16 5 C -0.14 -1.22 8.22 37.16 0.31 -0.91 16 6 C -0.14 -1.25 8.23 37.16 0.31 -0.94 16 7 C 0.53 7.39 6.48 -10.99 -0.07 7.32 16 8 O -0.54 -9.67 15.55 5.55 0.09 -9.58 16 9 N -0.69 -9.26 5.35 -53.80 -0.29 -9.55 16 10 C 0.09 1.58 5.97 -67.92 -0.41 1.18 16 11 H 0.13 2.52 7.40 -51.93 -0.38 2.13 16 12 C -0.18 -3.30 6.96 -89.22 -0.62 -3.92 16 13 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 14 C 0.19 4.42 5.92 -0.30 0.00 4.42 16 15 N -0.60 -15.36 3.45 -165.71 -0.57 -15.93 16 16 C -0.22 -6.23 10.36 -15.06 -0.16 -6.38 16 17 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 18 C -0.01 -0.22 5.42 -17.43 -0.09 -0.32 16 19 N -0.92 -26.84 10.82 55.49 0.60 -26.24 16 20 Si 0.91 21.95 29.56 -169.99 -5.03 16.92 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 C 0.16 3.36 7.05 -2.41 -0.02 3.35 16 25 C -0.18 -3.24 7.06 -89.22 -0.63 -3.87 16 26 H 0.10 1.63 8.14 -51.93 -0.42 1.20 16 27 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 31 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 32 H 0.08 0.64 7.68 -51.93 -0.40 0.24 16 33 H 0.06 0.47 7.57 -51.93 -0.39 0.08 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.49 7.56 -51.93 -0.39 0.10 16 37 H 0.08 0.65 7.68 -51.93 -0.40 0.25 16 38 H 0.40 4.26 7.66 -40.82 -0.31 3.95 16 39 H 0.09 2.45 6.56 -51.93 -0.34 2.11 16 40 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 348.78 15.07 5.26 5.26 Total: -1.00 -31.94 348.78 -7.74 -39.68 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -7.24 Total: 2.24 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -0.23 Total: 1.40 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: -0.26 Total: -51.72 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.24 Total: -13.79 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.94 -7.74 -39.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114568947.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.259 kcal (2) G-P(sol) polarization free energy of solvation -31.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds