Wall clock time and date at job start Tue Mar 31 2020 05:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47414 * 2 1 4 4 C 1.50708 * 109.46894 * 239.99981 * 2 1 3 5 5 H 1.07997 * 119.99690 * 240.00161 * 4 2 1 6 6 C 1.37875 * 120.00050 * 59.99862 * 4 2 1 7 7 N 1.31516 * 119.99915 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00185 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47025 * 90.00093 * 8 6 4 10 10 H 1.48496 * 109.47352 * 210.00804 * 8 6 4 11 11 H 1.48511 * 109.46991 * 330.00706 * 8 6 4 12 12 C 1.53003 * 109.46870 * 120.00486 * 2 1 3 13 13 N 1.46499 * 109.46708 * 299.99298 * 12 2 1 14 14 C 1.34784 * 119.99893 * 180.02562 * 13 12 2 15 15 O 1.21283 * 119.99649 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99774 * 179.72962 * 14 13 12 17 17 C 1.53003 * 109.46624 * 180.02562 * 16 14 13 18 18 H 1.08999 * 109.29703 * 305.40907 * 17 16 14 19 19 C 1.52924 * 109.29907 * 186.03356 * 17 16 14 20 20 C 1.53344 * 108.67741 * 188.93138 * 19 17 16 21 21 C 1.53071 * 108.42060 * 67.52889 * 20 19 17 22 22 C 1.50174 * 109.89307 * 311.10217 * 21 20 19 23 23 O 1.21285 * 118.24262 * 197.60702 * 22 21 20 24 24 N 1.33352 * 123.51026 * 17.58170 * 22 21 20 25 25 H 1.09007 * 109.46830 * 300.00287 * 1 2 3 26 26 H 1.09005 * 109.46980 * 59.99998 * 1 2 3 27 27 H 1.08994 * 109.47292 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.46855 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47095 * 300.00040 * 3 2 1 30 30 H 1.08998 * 109.46768 * 59.99989 * 3 2 1 31 31 H 0.97000 * 120.00246 * 179.97438 * 7 6 4 32 32 H 1.08998 * 109.46692 * 179.97438 * 12 2 1 33 33 H 1.08994 * 109.47584 * 59.99664 * 12 2 1 34 34 H 0.97005 * 120.00261 * 0.02562 * 13 12 2 35 35 H 1.09001 * 109.46809 * 299.99238 * 16 14 13 36 36 H 1.08993 * 109.47525 * 59.99679 * 16 14 13 37 37 H 1.08998 * 109.60283 * 308.69050 * 19 17 16 38 38 H 1.09002 * 109.60427 * 69.17336 * 19 17 16 39 39 H 1.09004 * 109.67045 * 307.80148 * 20 19 17 40 40 H 1.08998 * 109.70545 * 187.28203 * 20 19 17 41 41 H 1.09003 * 109.39857 * 190.97050 * 21 20 19 42 42 H 1.08995 * 109.39982 * 71.23246 * 21 20 19 43 43 H 0.96994 * 117.94599 * 177.75370 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.3446 -2.1616 -4.4124 10 1 2.4873 -0.1403 -5.1120 11 1 3.6307 -1.7568 -3.7120 12 6 2.0400 -0.7214 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5756 -1.4766 3.7807 16 6 1.3804 0.2231 4.8999 17 6 1.8903 -0.4983 6.1492 18 1 1.6028 -1.5486 6.1012 19 6 1.2632 0.1368 7.3909 20 6 1.9472 -0.4402 8.6362 21 6 3.3975 0.0487 8.6618 22 6 4.0361 -0.1757 7.3212 23 8 5.2467 -0.1537 7.2513 24 7 3.3434 -0.3985 6.2038 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 0.7094 1.1618 -3.4844 32 1 3.1300 -0.7218 1.2490 33 1 1.6766 -1.7490 1.2492 34 1 0.9938 0.7579 2.3564 35 1 1.7481 1.2493 4.8979 36 1 0.2905 0.2276 4.9019 37 1 1.4075 1.2168 7.3617 38 1 0.1978 -0.0915 7.4200 39 1 1.9277 -1.5292 8.5941 40 1 1.4287 -0.0982 9.5319 41 1 3.9513 -0.5005 9.4233 42 1 3.4168 1.1125 8.8985 43 1 3.8375 -0.5002 5.3753 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129695524.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:05 Heat of formation + Delta-G solvation = -100.016170 kcal Electronic energy + Delta-G solvation = -22621.556154 eV Core-core repulsion = 19279.551918 eV Total energy + Delta-G solvation = -3342.004236 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.59929 -39.23860 -36.96517 -36.25733 -33.41784 -33.30565 -31.55191 -30.74679 -28.01983 -25.78429 -25.63579 -24.94080 -23.42470 -22.45739 -20.15293 -19.29885 -18.84639 -17.37446 -16.96112 -16.30677 -15.85843 -15.64717 -15.14040 -14.91776 -14.65237 -14.29617 -14.00150 -13.90827 -13.26588 -13.22491 -12.96064 -12.87158 -12.25304 -12.10410 -11.76639 -11.51003 -11.38998 -11.31972 -11.27937 -11.23794 -10.90093 -10.72708 -10.44176 -10.24408 -9.84353 -9.69251 -9.63922 -9.29782 -9.08007 -8.83691 -8.52692 -8.37736 -6.06121 -4.16327 2.62378 2.89672 3.26021 3.27482 3.33207 3.36986 3.57779 4.28881 4.35965 4.40669 4.44849 4.55724 4.85091 5.01761 5.03838 5.20877 5.24223 5.30229 5.37133 5.46740 5.55799 5.59693 5.68365 5.92320 6.16584 6.26634 6.44673 6.70013 6.75829 6.81974 6.86698 6.95621 6.96048 7.29608 7.39752 7.50232 7.65354 7.94571 7.95931 8.09322 8.22560 8.33613 8.57306 8.84394 9.49909 10.95307 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036326 B = 0.003207 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.620699 B = 8729.014854 C = 9061.481222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.130 3.870 13 N -0.714 5.714 14 C 0.500 3.500 15 O -0.552 6.552 16 C -0.159 4.159 17 C 0.157 3.843 18 H 0.084 0.916 19 C -0.134 4.134 20 C -0.123 4.123 21 C -0.135 4.135 22 C 0.515 3.485 23 O -0.565 6.565 24 N -0.705 5.705 25 H 0.006 0.994 26 H 0.086 0.914 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.086 0.914 30 H 0.006 0.994 31 H 0.260 0.740 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.399 0.601 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.512 2.126 19.066 19.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.008 3.992 13 N -0.364 5.364 14 C 0.285 3.715 15 O -0.432 6.432 16 C -0.199 4.199 17 C 0.051 3.949 18 H 0.102 0.898 19 C -0.172 4.172 20 C -0.161 4.161 21 C -0.175 4.175 22 C 0.302 3.698 23 O -0.445 6.445 24 N -0.359 5.359 25 H 0.025 0.975 26 H 0.104 0.896 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.104 0.896 30 H 0.025 0.975 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.234 0.766 35 H 0.117 0.883 36 H 0.126 0.874 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -3.593 1.571 19.126 19.524 hybrid contribution 0.056 -0.076 -1.373 1.377 sum -3.538 1.495 17.753 18.164 Atomic orbital electron populations 1.21834 0.97755 0.99156 1.00080 1.18358 0.92782 0.92756 0.90587 1.21831 0.98620 0.98331 1.00073 1.20990 1.31546 1.12138 0.89908 0.92434 1.24877 0.94832 0.94897 0.98881 1.69798 1.36712 1.22689 1.23279 0.86567 0.79364 0.79390 0.82543 1.20692 1.21238 1.19871 1.21741 0.98222 0.95804 0.83437 1.46351 1.52259 1.31632 1.06117 1.20529 0.81030 0.84902 0.85037 1.90690 1.38748 1.26810 1.86912 1.22156 1.03448 1.01334 0.92990 1.20699 0.80210 1.00408 0.93576 0.89783 1.21979 1.00693 1.01099 0.93398 1.21654 0.94503 1.01551 0.98393 1.21649 0.96817 1.04100 0.94971 1.20178 0.87286 0.75915 0.86467 1.90760 1.14639 1.52281 1.86778 1.45691 1.07490 1.71595 1.11125 0.97540 0.89570 0.95451 0.95433 0.89564 0.97547 0.92975 0.92648 0.92651 0.76625 0.88336 0.87415 0.90635 0.89490 0.90938 0.90390 0.88355 0.88387 0.75401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 8.08 37.16 0.30 -2.53 16 2 C 0.06 1.26 0.50 -155.65 -0.08 1.18 16 3 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 4 C -0.51 -13.11 8.01 -34.44 -0.28 -13.39 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.29 9.35 55.43 0.52 -22.77 16 8 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 C 0.13 2.66 4.50 -4.04 -0.02 2.64 16 13 N -0.71 -11.52 4.96 -60.30 -0.30 -11.82 16 14 C 0.50 7.47 7.48 -10.98 -0.08 7.39 16 15 O -0.55 -10.26 14.55 5.56 0.08 -10.18 16 16 C -0.16 -1.53 5.34 -27.88 -0.15 -1.68 16 17 C 0.16 1.51 2.64 -68.37 -0.18 1.33 16 18 H 0.08 0.89 7.94 -51.93 -0.41 0.48 16 19 C -0.13 -0.83 5.30 -26.59 -0.14 -0.98 16 20 C -0.12 -0.76 6.03 -26.52 -0.16 -0.92 16 21 C -0.14 -1.13 6.03 -28.10 -0.17 -1.30 16 22 C 0.51 6.79 7.71 -11.87 -0.09 6.70 16 23 O -0.57 -10.09 17.78 5.55 0.10 -10.00 16 24 N -0.71 -8.95 5.01 -54.86 -0.27 -9.23 16 25 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 26 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 30 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 31 H 0.26 6.61 8.31 -40.82 -0.34 6.28 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.40 5.73 6.16 -40.82 -0.25 5.48 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.43 8.11 -51.93 -0.42 0.01 16 38 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.48 8.13 -51.93 -0.42 0.05 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.41 6.23 6.93 -40.82 -0.28 5.95 16 LS Contribution 337.97 15.07 5.09 5.09 Total: -1.00 -30.92 337.97 -7.54 -38.47 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -6.90 Total: 7.39 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -0.84 Total: -2.50 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: -0.06 Total: -43.82 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: 0.18 Total: -20.18 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.92 -7.54 -38.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129695524.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.549 kcal (2) G-P(sol) polarization free energy of solvation -30.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds