Wall clock time and date at job start Tue Mar 31 2020 05:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 C 1.50690 * 109.47084 * 239.99835 * 2 1 3 5 5 H 1.08005 * 119.99710 * 239.99726 * 4 2 1 6 6 C 1.37876 * 120.00510 * 59.99933 * 4 2 1 7 7 N 1.31518 * 119.99589 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00335 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47182 * 90.00062 * 8 6 4 10 10 H 1.48500 * 109.46728 * 210.00122 * 8 6 4 11 11 H 1.48498 * 109.46997 * 329.99816 * 8 6 4 12 12 C 1.53006 * 109.46974 * 119.99741 * 2 1 3 13 13 N 1.46504 * 109.46883 * 299.99861 * 12 2 1 14 14 C 1.34776 * 119.99735 * 179.97438 * 13 12 2 15 15 O 1.21282 * 119.99940 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00035 * 179.97438 * 14 13 12 17 17 C 1.53006 * 109.47184 * 180.02562 * 16 14 13 18 18 H 1.09005 * 109.29587 * 55.41724 * 17 16 14 19 19 C 1.52916 * 109.29917 * 175.00220 * 17 16 14 20 20 C 1.53344 * 108.67315 * 171.06795 * 19 17 16 21 21 C 1.53072 * 108.42687 * 292.46868 * 20 19 17 22 22 C 1.50180 * 109.88895 * 48.89644 * 21 20 19 23 23 O 1.21286 * 118.24653 * 162.39337 * 22 21 20 24 24 N 1.33356 * 123.50810 * 342.42424 * 22 21 20 25 25 H 1.09004 * 109.47059 * 299.99867 * 1 2 3 26 26 H 1.08992 * 109.47060 * 60.00351 * 1 2 3 27 27 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.46716 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46668 * 300.00213 * 3 2 1 30 30 H 1.09000 * 109.47360 * 59.99707 * 3 2 1 31 31 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 32 32 H 1.08998 * 109.46509 * 180.02562 * 12 2 1 33 33 H 1.08993 * 109.46955 * 59.99927 * 12 2 1 34 34 H 0.96998 * 120.00303 * 0.02562 * 13 12 2 35 35 H 1.09001 * 109.46665 * 60.00498 * 16 14 13 36 36 H 1.08993 * 109.47304 * 300.00054 * 16 14 13 37 37 H 1.08996 * 109.60697 * 290.82089 * 19 17 16 38 38 H 1.09001 * 109.60243 * 51.31118 * 19 17 16 39 39 H 1.08998 * 109.67693 * 52.20220 * 20 19 17 40 40 H 1.09001 * 109.67618 * 172.69792 * 20 19 17 41 41 H 1.08997 * 109.40494 * 169.02969 * 21 20 19 42 42 H 1.09002 * 109.40311 * 288.86093 * 21 20 19 43 43 H 0.97001 * 117.94094 * 182.21626 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9427 0.8295 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 1.3428 -2.1619 -4.4117 10 1 2.4866 -0.1416 -5.1121 11 1 3.6293 -1.7585 -3.7120 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4455 14 6 1.8768 -0.4912 3.6696 15 8 2.5740 -1.4773 3.7809 16 6 1.3749 0.2196 4.9000 17 6 1.8848 -0.5017 6.1493 18 1 2.9717 -0.5722 6.1061 19 6 1.4787 0.2915 7.3920 20 6 1.7957 -0.5478 8.6355 21 6 0.8641 -1.7623 8.6499 22 6 0.8785 -2.4332 7.3064 23 8 0.4667 -3.5714 7.2287 24 7 1.3204 -1.8447 6.1943 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 0.7087 1.1611 -3.4844 32 1 3.1300 -0.7208 1.2495 33 1 1.6767 -1.7488 1.2494 34 1 0.9937 0.7580 2.3564 35 1 0.2849 0.2204 4.8999 36 1 1.7391 1.2469 4.9000 37 1 2.0390 1.2257 7.4289 38 1 0.4103 0.5043 7.3570 39 1 2.8328 -0.8813 8.5986 40 1 1.6343 0.0498 9.5327 41 1 1.1999 -2.4673 9.4103 42 1 -0.1506 -1.4376 8.8801 43 1 1.2625 -2.3416 5.3633 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129695525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:08 Heat of formation + Delta-G solvation = -99.908876 kcal Electronic energy + Delta-G solvation = -22627.101525 eV Core-core repulsion = 19285.101941 eV Total energy + Delta-G solvation = -3341.999584 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.60010 -39.23748 -36.96332 -36.25745 -33.42070 -33.30017 -31.55082 -30.74567 -28.01932 -25.78441 -25.63603 -24.94108 -23.42340 -22.45594 -20.15567 -19.29502 -18.84739 -17.36827 -16.96506 -16.29695 -15.85790 -15.64564 -15.14433 -14.91996 -14.64953 -14.29453 -14.00363 -13.90557 -13.26403 -13.22616 -12.96159 -12.87174 -12.25305 -12.10210 -11.76427 -11.51275 -11.39046 -11.31866 -11.27972 -11.23809 -10.90139 -10.72721 -10.44238 -10.24436 -9.84189 -9.69338 -9.63622 -9.29780 -9.07463 -8.83757 -8.52817 -8.37797 -6.06170 -4.16349 2.62857 2.89501 3.26178 3.28028 3.33251 3.36811 3.57720 4.28941 4.35970 4.40817 4.44901 4.55874 4.85130 5.01662 5.03842 5.20844 5.24350 5.30324 5.37165 5.46810 5.55836 5.59781 5.68284 5.92279 6.16485 6.26641 6.44618 6.69891 6.75786 6.82524 6.86713 6.95720 6.96011 7.29533 7.40376 7.50204 7.65335 7.94421 7.95901 8.09287 8.23143 8.33633 8.57157 8.84373 9.49886 10.95273 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036275 B = 0.003212 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.689409 B = 8714.333604 C = 9051.343190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.130 3.870 13 N -0.713 5.713 14 C 0.500 3.500 15 O -0.552 6.552 16 C -0.159 4.159 17 C 0.157 3.843 18 H 0.084 0.916 19 C -0.134 4.134 20 C -0.123 4.123 21 C -0.135 4.135 22 C 0.514 3.486 23 O -0.565 6.565 24 N -0.706 5.706 25 H 0.006 0.994 26 H 0.086 0.914 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.086 0.914 30 H 0.006 0.994 31 H 0.260 0.740 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.399 0.601 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.524 4.979 19.075 19.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.008 3.992 13 N -0.363 5.363 14 C 0.285 3.715 15 O -0.432 6.432 16 C -0.199 4.199 17 C 0.051 3.949 18 H 0.102 0.898 19 C -0.172 4.172 20 C -0.161 4.161 21 C -0.175 4.175 22 C 0.301 3.699 23 O -0.445 6.445 24 N -0.359 5.359 25 H 0.024 0.976 26 H 0.104 0.896 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.104 0.896 30 H 0.025 0.975 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.234 0.766 35 H 0.117 0.883 36 H 0.126 0.874 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -0.295 3.931 19.130 19.532 hybrid contribution 0.035 -0.091 -1.373 1.376 sum -0.260 3.841 17.757 18.169 Atomic orbital electron populations 1.21836 0.97755 0.99201 1.00074 1.18356 0.92783 0.92754 0.90585 1.21830 0.98572 0.98337 1.00081 1.20988 1.31556 1.12131 0.89909 0.92435 1.24878 0.94829 0.94898 0.98882 1.69799 1.36657 1.22746 1.23274 0.86565 0.79356 0.79403 0.82532 1.20678 1.21243 1.19882 1.21747 0.98180 0.95846 0.83436 1.46350 1.52200 1.31672 1.06121 1.20527 0.80871 0.85047 0.85037 1.90687 1.38784 1.26805 1.86903 1.22157 1.03411 1.01372 0.92990 1.20705 0.98780 0.81823 0.93582 0.89806 1.21974 1.02851 0.98939 0.93388 1.21653 1.00026 0.96017 0.98402 1.21653 1.02436 0.98497 0.94946 1.20185 0.76826 0.86347 0.86519 1.90760 1.48287 1.18733 1.86690 1.45714 1.62050 1.16885 1.11293 0.97550 0.89561 0.95441 0.95442 0.89571 0.97537 0.92977 0.92636 0.92646 0.76623 0.88347 0.87412 0.89490 0.90627 0.90940 0.90393 0.88351 0.88395 0.75343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 2 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 3 C -0.13 -2.83 8.08 37.16 0.30 -2.53 16 4 C -0.51 -13.11 8.01 -34.45 -0.28 -13.39 16 5 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.29 9.35 55.43 0.52 -22.77 16 8 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 C 0.13 2.65 4.50 -4.04 -0.02 2.64 16 13 N -0.71 -11.52 4.96 -60.29 -0.30 -11.82 16 14 C 0.50 7.48 7.47 -10.99 -0.08 7.40 16 15 O -0.55 -10.27 14.49 5.56 0.08 -10.18 16 16 C -0.16 -1.53 5.35 -27.88 -0.15 -1.68 16 17 C 0.16 1.51 2.65 -68.38 -0.18 1.33 16 18 H 0.08 0.89 7.96 -51.93 -0.41 0.47 16 19 C -0.13 -0.83 5.30 -26.60 -0.14 -0.97 16 20 C -0.12 -0.76 6.03 -26.52 -0.16 -0.92 16 21 C -0.14 -1.14 6.03 -28.10 -0.17 -1.31 16 22 C 0.51 6.81 7.71 -11.87 -0.09 6.71 16 23 O -0.57 -10.13 17.78 5.55 0.10 -10.03 16 24 N -0.71 -8.99 5.00 -54.85 -0.27 -9.27 16 25 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 26 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 30 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 31 H 0.26 6.61 8.31 -40.82 -0.34 6.28 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.40 5.73 6.16 -40.82 -0.25 5.48 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.43 8.11 -51.93 -0.42 0.01 16 39 H 0.07 0.48 8.13 -51.93 -0.42 0.05 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.41 6.28 6.84 -40.82 -0.28 6.00 16 LS Contribution 337.86 15.07 5.09 5.09 Total: -1.00 -30.93 337.86 -7.54 -38.47 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -6.90 Total: 7.43 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -0.84 Total: -2.48 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: -0.05 Total: -43.86 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: 0.18 Total: -20.21 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.93 -7.54 -38.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129695525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.436 kcal (2) G-P(sol) polarization free energy of solvation -30.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds