Wall clock time and date at job start Tue Mar 31 2020 05:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47655 * 2 1 4 4 C 1.53004 * 109.47345 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47006 * 180.02562 * 4 3 2 6 6 C 1.37100 * 119.99755 * 264.54258 * 5 4 3 7 7 H 1.08002 * 119.99681 * 145.53383 * 6 5 4 8 8 C 1.38949 * 120.00250 * 325.53010 * 6 5 4 9 9 N 1.31414 * 119.99544 * 338.26391 * 8 6 5 10 10 Si 1.86792 * 120.00108 * 158.25974 * 8 6 5 11 11 H 1.48500 * 109.47023 * 89.99968 * 10 8 6 12 12 H 1.48502 * 109.47450 * 210.00298 * 10 8 6 13 13 H 1.48505 * 109.47274 * 330.00226 * 10 8 6 14 14 C 1.34775 * 120.00024 * 84.54235 * 5 4 3 15 15 O 1.21296 * 120.00086 * 359.97438 * 14 5 4 16 16 C 1.50694 * 119.99939 * 179.97438 * 14 5 4 17 17 H 1.09000 * 110.00004 * 40.35732 * 16 14 5 18 18 C 1.54328 * 109.88128 * 279.25884 * 16 14 5 19 19 C 1.55155 * 102.94498 * 262.77700 * 18 16 14 20 20 C 1.55132 * 101.48498 * 324.33312 * 19 18 16 21 21 N 1.47028 * 109.88401 * 161.45565 * 16 14 5 22 22 C 1.34777 * 125.64478 * 300.44111 * 21 16 14 23 23 C 1.50701 * 119.99501 * 179.97438 * 22 21 16 24 24 O 1.21275 * 120.00021 * 359.97438 * 22 21 16 25 25 H 1.09002 * 109.46678 * 300.00343 * 1 2 3 26 26 H 1.09006 * 109.46733 * 59.99512 * 1 2 3 27 27 H 1.08994 * 109.47341 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.47027 * 239.99766 * 2 1 3 29 29 H 1.09006 * 109.46733 * 120.00488 * 2 1 3 30 30 H 1.09009 * 109.47095 * 59.99807 * 3 2 1 31 31 H 1.08997 * 109.47221 * 299.99953 * 3 2 1 32 32 H 1.08994 * 109.46920 * 60.00469 * 4 3 2 33 33 H 1.08997 * 109.47088 * 300.00237 * 4 3 2 34 34 H 0.97007 * 119.99484 * 179.97438 * 9 8 6 35 35 H 1.09000 * 110.71861 * 21.14191 * 18 16 14 36 36 H 1.09003 * 110.71895 * 144.41128 * 18 16 14 37 37 H 1.08995 * 110.99991 * 82.57087 * 19 18 16 38 38 H 1.09000 * 111.00177 * 206.38752 * 19 18 16 39 39 H 1.08995 * 110.49647 * 278.45166 * 20 19 18 40 40 H 1.08999 * 110.34066 * 156.06265 * 20 19 18 41 41 H 1.09002 * 109.46707 * 90.00246 * 23 22 21 42 42 H 1.09005 * 109.46687 * 209.99389 * 23 22 21 43 43 H 1.08995 * 109.47584 * 329.99843 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5702 1.4423 0.0006 5 7 4.0586 2.8236 0.0013 6 6 4.3940 3.4325 -1.1804 7 1 4.2173 4.4898 -1.3122 8 6 4.9615 2.6895 -2.2083 9 7 5.5646 1.5528 -1.9418 10 14 4.8669 3.3064 -3.9689 11 1 6.0516 4.1527 -4.2612 12 1 4.8441 2.1486 -4.8986 13 1 3.6298 4.1084 -4.1467 14 6 4.1781 3.4956 1.1634 15 8 3.8808 2.9569 2.2088 16 6 4.6810 4.9161 1.1641 17 1 4.2535 5.4633 0.3239 18 6 6.2213 4.9276 1.0688 19 6 6.6598 5.0867 2.5486 20 6 5.5503 6.0197 3.1010 21 7 4.3169 5.5749 2.4271 22 6 3.0628 5.7485 2.8894 23 6 2.8350 6.4441 4.2067 24 8 2.1179 5.3449 2.2453 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6769 1.9563 -0.8900 32 1 3.9338 0.9284 -0.8891 33 1 3.9331 0.9286 0.8908 34 1 5.9604 1.0339 -2.6595 35 1 6.5892 3.9881 0.6565 36 1 6.5645 5.7726 0.4719 37 1 6.6579 4.1253 3.0621 38 1 7.6383 5.5620 2.6171 39 1 5.7657 7.0585 2.8509 40 1 5.4572 5.8999 4.1804 41 1 2.7258 7.5153 4.0377 42 1 1.9286 6.0552 4.6709 43 1 3.6857 6.2648 4.8642 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144313832.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:24 Heat of formation + Delta-G solvation = -74.970808 kcal Electronic energy + Delta-G solvation = -23894.759522 eV Core-core repulsion = 20553.841334 eV Total energy + Delta-G solvation = -3340.918188 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.92169 -38.03890 -36.60413 -35.02865 -33.86986 -31.68161 -31.35338 -29.74906 -28.78410 -27.62838 -24.85816 -23.69145 -22.51373 -21.07141 -20.32182 -19.41867 -18.62226 -17.11080 -16.58407 -15.91622 -15.23483 -14.90829 -14.65672 -14.28242 -14.18409 -13.97552 -13.59349 -13.09183 -12.90429 -12.60502 -12.43229 -12.35924 -12.11544 -12.07776 -11.84927 -11.70990 -11.35838 -11.19018 -10.98235 -10.81330 -10.68009 -10.60527 -10.44790 -10.39983 -10.25550 -10.08358 -9.62355 -9.33187 -9.04504 -8.66504 -7.86952 -7.43989 -6.35310 -4.01258 3.10885 3.14199 3.22006 3.27533 3.45904 3.98310 4.14052 4.77657 4.87841 4.94919 5.02279 5.21967 5.29459 5.48396 5.58149 5.58724 5.59297 5.64214 5.72758 5.76740 5.92828 6.02514 6.11269 6.18681 6.28414 6.32970 6.34203 6.44411 6.49422 6.53782 6.62867 6.74071 6.82286 6.87083 6.98693 7.23415 7.41260 7.56000 7.97852 8.03597 8.42223 8.71472 9.12072 9.60311 10.03666 10.65392 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.012882 B = 0.007455 C = 0.005478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.001556 B = 3755.175844 C = 5110.331627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.128 4.128 4 C 0.119 3.881 5 N -0.437 5.437 6 C -0.336 4.336 7 H 0.086 0.914 8 C 0.045 3.955 9 N -0.858 5.858 10 Si 0.908 3.092 11 H -0.277 1.277 12 H -0.282 1.282 13 H -0.269 1.269 14 C 0.474 3.526 15 O -0.594 6.594 16 C 0.134 3.866 17 H 0.089 0.911 18 C -0.108 4.108 19 C -0.134 4.134 20 C 0.103 3.897 21 N -0.601 5.601 22 C 0.527 3.473 23 C -0.165 4.165 24 O -0.537 6.537 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.106 0.894 33 H 0.048 0.952 34 H 0.269 0.731 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.190 6.378 5.877 8.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.167 4.167 4 C -0.005 4.005 5 N -0.155 5.155 6 C -0.464 4.464 7 H 0.104 0.896 8 C -0.161 4.161 9 N -0.495 5.495 10 Si 0.734 3.266 11 H -0.203 1.203 12 H -0.207 1.207 13 H -0.194 1.194 14 C 0.262 3.738 15 O -0.479 6.479 16 C 0.028 3.972 17 H 0.106 0.894 18 C -0.147 4.147 19 C -0.172 4.172 20 C -0.020 4.020 21 N -0.336 5.336 22 C 0.315 3.685 23 C -0.224 4.224 24 O -0.414 6.414 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.123 0.877 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.536 5.734 5.959 8.287 hybrid contribution 0.040 0.267 -1.030 1.065 sum 0.577 6.001 4.929 7.787 Atomic orbital electron populations 1.21753 0.96693 1.00508 1.01551 1.21422 0.94968 0.97846 1.01371 1.21899 0.97974 0.95263 1.01551 1.21380 0.91076 0.84824 1.03184 1.43386 1.55320 1.12057 1.04730 1.19373 1.40595 0.95458 0.90958 0.89591 1.25261 0.94360 0.96320 1.00145 1.69943 1.31473 1.14940 1.33103 0.86243 0.78968 0.78611 0.82753 1.20262 1.20714 1.19370 1.20320 0.81347 0.88223 0.83951 1.90500 1.55196 1.70197 1.32044 1.21328 0.96087 0.93419 0.86393 0.89361 1.22438 0.92157 1.04148 0.95910 1.22839 0.97413 1.00163 0.96744 1.22323 0.84608 0.97790 0.97255 1.48344 1.05442 1.57377 1.22477 1.20252 0.81340 0.79446 0.87425 1.21844 1.04096 1.01483 0.95027 1.90722 1.40823 1.50242 1.59588 0.93060 0.93070 0.93508 0.92380 0.92555 0.92663 0.92528 0.87673 0.93391 0.92107 0.88643 0.90601 0.90419 0.90214 0.91586 0.90989 0.89498 0.89332 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.91 37.16 0.37 -1.98 16 2 C -0.12 -2.19 5.93 -26.73 -0.16 -2.35 16 3 C -0.13 -2.90 5.50 -26.73 -0.15 -3.05 16 4 C 0.12 2.99 4.89 -4.04 -0.02 2.97 16 5 N -0.44 -11.36 2.55 -114.81 -0.29 -11.65 16 6 C -0.34 -8.56 8.50 -14.93 -0.13 -8.68 16 7 H 0.09 2.14 6.49 -52.49 -0.34 1.80 16 8 C 0.04 1.12 4.93 -17.47 -0.09 1.03 16 9 N -0.86 -22.22 11.34 55.50 0.63 -21.59 16 10 Si 0.91 19.38 29.60 -169.99 -5.03 14.35 16 11 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 12 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 13 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 14 C 0.47 12.08 5.96 -10.99 -0.07 12.02 16 15 O -0.59 -16.59 15.64 5.54 0.09 -16.51 16 16 C 0.13 2.82 2.54 -68.10 -0.17 2.65 16 17 H 0.09 1.94 6.65 -51.93 -0.35 1.60 16 18 C -0.11 -1.88 6.23 -24.90 -0.15 -2.03 16 19 C -0.13 -1.88 7.10 -24.46 -0.17 -2.05 16 20 C 0.10 1.38 6.68 -2.41 -0.02 1.36 16 21 N -0.60 -11.13 2.79 -164.18 -0.46 -11.59 16 22 C 0.53 10.25 7.30 -10.98 -0.08 10.17 16 23 C -0.16 -2.15 9.90 36.01 0.36 -1.80 16 24 O -0.54 -13.18 16.73 5.56 0.09 -13.09 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 1.37 8.14 -51.92 -0.42 0.95 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.11 2.74 5.37 -51.93 -0.28 2.46 16 33 H 0.05 1.25 7.59 -51.93 -0.39 0.86 16 34 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 35 H 0.10 1.93 7.82 -51.93 -0.41 1.52 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.82 6.74 -51.93 -0.35 0.47 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.08 0.83 6.52 -51.93 -0.34 0.49 16 LS Contribution 346.70 15.07 5.22 5.22 Total: -1.00 -32.77 346.70 -7.31 -40.09 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -7.08 Total: 6.52 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -0.48 Total: 8.25 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: -0.12 Total: -44.83 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: 0.18 Total: -29.60 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.77 -7.31 -40.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144313832.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.886 kcal (2) G-P(sol) polarization free energy of solvation -32.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds