Wall clock time and date at job start Tue Mar 31 2020 05:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50704 * 119.99944 * 2 1 4 4 H 1.09004 * 109.48811 * 359.97038 * 3 2 1 5 5 O 1.42897 * 109.47687 * 239.94174 * 3 2 1 6 6 C 1.42910 * 114.09026 * 178.86059 * 5 3 2 7 7 C 1.53089 * 109.41642 * 61.16083 * 6 5 3 8 8 C 1.53180 * 109.15983 * 302.38709 * 7 6 5 9 9 C 1.53097 * 109.47972 * 119.99637 * 3 2 1 10 10 H 1.09001 * 109.57173 * 57.65078 * 9 3 2 11 11 C 1.50699 * 109.52074 * 297.50185 * 9 3 2 12 12 O 1.21280 * 120.00190 * 0.30686 * 11 9 3 13 13 N 1.34780 * 119.99667 * 180.31878 * 11 9 3 14 14 C 1.46505 * 119.99861 * 179.97438 * 13 11 9 15 15 C 1.53001 * 109.47038 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.47082 * 179.97438 * 15 14 13 17 17 N 1.46502 * 109.47116 * 180.02562 * 16 15 14 18 18 C 1.36930 * 120.00159 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99841 * 0.02562 * 18 17 16 20 20 C 1.38810 * 120.00182 * 179.97438 * 18 17 16 21 21 N 1.31622 * 119.99887 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00212 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 89.99941 * 22 20 18 24 24 H 1.48503 * 109.47261 * 330.00122 * 22 20 18 25 25 H 1.48500 * 109.47454 * 210.00115 * 22 20 18 26 26 H 1.07999 * 120.00018 * 179.97438 * 1 2 3 27 27 H 1.08002 * 119.99997 * 0.02562 * 1 2 3 28 28 H 1.07996 * 119.99565 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.48544 * 301.16804 * 6 5 3 30 30 H 1.09010 * 109.48481 * 181.14472 * 6 5 3 31 31 H 1.09004 * 109.52083 * 182.48394 * 7 6 5 32 32 H 1.08994 * 109.52890 * 62.29118 * 7 6 5 33 33 H 1.09004 * 109.54232 * 297.11162 * 8 7 6 34 34 H 1.09004 * 109.54010 * 176.85420 * 8 7 6 35 35 H 0.96999 * 120.00060 * 359.97438 * 13 11 9 36 36 H 1.09000 * 109.46808 * 59.99476 * 14 13 11 37 37 H 1.08995 * 109.46613 * 299.99378 * 14 13 11 38 38 H 1.09002 * 109.47104 * 59.99569 * 15 14 13 39 39 H 1.08996 * 109.47049 * 300.00371 * 15 14 13 40 40 H 1.08997 * 109.46988 * 60.00382 * 16 15 14 41 41 H 1.08990 * 109.47518 * 299.99931 * 16 15 14 42 42 H 0.97008 * 119.99482 * 0.02562 * 17 16 15 43 43 H 0.96993 * 120.00105 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3555 2.1339 -0.0005 5 8 2.8862 1.3804 -1.1660 6 6 3.6287 2.5962 -1.2786 7 6 4.5718 2.7294 -0.0801 8 6 3.7511 2.6876 1.2126 9 6 2.9438 1.3865 1.2500 10 1 3.6247 0.5357 1.2731 11 6 2.0739 1.3686 2.4804 12 8 0.8685 1.2922 2.3699 13 7 2.6354 1.4378 3.7037 14 6 1.7897 1.4210 4.8999 15 6 2.6701 1.5096 6.1482 16 6 1.7869 1.4927 7.3974 17 7 2.6298 1.5781 8.5926 18 6 2.0565 1.5792 9.8361 19 1 0.9829 1.5166 9.9358 20 6 2.8552 1.6596 10.9685 21 7 4.1636 1.7353 10.8470 22 14 2.0730 1.6617 12.6649 23 1 1.9493 0.2653 13.1547 24 1 0.7252 2.2805 12.5878 25 1 2.9226 2.4411 13.6008 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 2.9413 3.4418 -1.2959 30 1 4.2114 2.5825 -2.1998 31 1 5.1071 3.6770 -0.1412 32 1 5.2858 1.9058 -0.0849 33 1 3.0715 3.5394 1.2407 34 1 4.4213 2.7257 2.0714 35 1 3.5994 1.4988 3.7921 36 1 1.2153 0.4950 4.9258 37 1 1.1079 2.2710 4.8747 38 1 3.2448 2.4354 6.1225 39 1 3.3517 0.6594 6.1731 40 1 1.2119 0.5671 7.4233 41 1 1.1056 2.3430 7.3723 42 1 3.5941 1.6340 8.5029 43 1 4.5697 1.7346 9.9662 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158310418.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:42 Heat of formation + Delta-G solvation = -65.197556 kcal Electronic energy + Delta-G solvation = -21938.928471 eV Core-core repulsion = 18598.434083 eV Total energy + Delta-G solvation = -3340.494388 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.72267 -38.82773 -36.21513 -34.78127 -34.12803 -34.09960 -32.11117 -30.63399 -29.22714 -25.60719 -25.33954 -24.10771 -22.66276 -21.39504 -21.22067 -20.18791 -20.04759 -17.71240 -17.20734 -16.69569 -16.30021 -15.83156 -15.65051 -15.05486 -14.74712 -14.56867 -14.43773 -14.20384 -13.75592 -13.64168 -13.31617 -13.03144 -12.85751 -12.48089 -12.11603 -11.91133 -11.56876 -11.48766 -11.28531 -11.16681 -10.93461 -10.73742 -10.63534 -10.55603 -10.03791 -9.99810 -9.95916 -9.34576 -9.19326 -9.09598 -8.90488 -7.03864 -6.13353 -3.13169 2.09673 2.52347 3.00449 3.50997 3.55945 3.63869 3.69913 4.24180 4.30612 4.38658 4.53975 4.64808 4.72512 4.81516 4.88536 5.02128 5.08594 5.11513 5.20130 5.28584 5.35876 5.43914 5.50847 5.51689 5.56319 5.59263 5.74705 5.81419 5.88980 5.96014 5.98817 6.15878 6.37410 6.48207 6.62249 6.67536 6.71455 6.88876 7.38622 7.79291 8.11037 8.73342 9.20057 10.06370 10.20841 11.35525 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033908 B = 0.002583 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.564402 B =10835.482820 C =11480.523954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.156 4.156 3 C 0.144 3.856 4 H 0.069 0.931 5 O -0.374 6.374 6 C 0.057 3.943 7 C -0.155 4.155 8 C -0.115 4.115 9 C -0.136 4.136 10 H 0.106 0.894 11 C 0.518 3.482 12 O -0.532 6.532 13 N -0.727 5.727 14 C 0.124 3.876 15 C -0.139 4.139 16 C 0.162 3.838 17 N -0.745 5.745 18 C -0.332 4.332 19 H 0.066 0.934 20 C -0.046 4.046 21 N -0.945 5.945 22 Si 1.084 2.916 23 H -0.295 1.295 24 H -0.294 1.294 25 H -0.287 1.287 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.109 0.891 29 H 0.051 0.949 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.399 0.601 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.023 0.977 41 H 0.022 0.978 42 H 0.366 0.634 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.085 0.788 -26.077 26.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.174 4.174 3 C 0.086 3.914 4 H 0.087 0.913 5 O -0.293 6.293 6 C -0.020 4.020 7 C -0.193 4.193 8 C -0.153 4.153 9 C -0.158 4.158 10 H 0.124 0.876 11 C 0.304 3.696 12 O -0.408 6.408 13 N -0.379 5.379 14 C 0.000 4.000 15 C -0.177 4.177 16 C 0.034 3.966 17 N -0.391 5.391 18 C -0.463 4.463 19 H 0.084 0.916 20 C -0.244 4.244 21 N -0.591 5.591 22 Si 0.915 3.085 23 H -0.222 1.222 24 H -0.221 1.221 25 H -0.213 1.213 26 H 0.117 0.883 27 H 0.116 0.884 28 H 0.127 0.873 29 H 0.069 0.931 30 H 0.114 0.886 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.233 0.767 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.041 0.959 41 H 0.040 0.960 42 H 0.199 0.801 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.914 0.648 -24.613 24.638 hybrid contribution 0.540 0.150 -1.295 1.411 sum -0.374 0.798 -25.907 25.922 Atomic orbital electron populations 1.23759 0.95575 1.01882 0.96450 1.22360 0.95647 0.96419 1.03005 1.20837 0.90209 0.97167 0.83190 0.91321 1.87998 1.60153 1.38790 1.42353 1.22619 0.93707 0.87237 0.98404 1.22207 0.98850 1.03361 0.94843 1.21616 0.98731 0.96106 0.98866 1.21967 0.98593 1.01005 0.94221 0.87638 1.20292 0.88803 0.76201 0.84335 1.90719 1.14642 1.48762 1.86682 1.46087 1.10811 1.75070 1.05898 1.21328 0.93350 1.02464 0.82845 1.21959 0.99140 1.02478 0.94102 1.20451 0.92874 0.98302 0.84983 1.42358 1.04753 1.90485 1.01519 1.20079 0.93230 1.48110 0.84908 0.91636 1.25820 0.95722 1.00353 1.02471 1.70857 1.09412 1.53674 1.25134 0.83179 0.74026 0.76350 0.74976 1.22249 1.22098 1.21332 0.88260 0.88391 0.87265 0.93057 0.88573 0.90255 0.90605 0.91049 0.90528 0.76670 0.91325 0.91356 0.91445 0.91420 0.95950 0.95964 0.80053 0.93436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 13.11 29.01 0.38 -1.11 16 2 C -0.16 -1.70 8.04 -36.03 -0.29 -1.99 16 3 C 0.14 1.49 2.17 -27.83 -0.06 1.43 16 4 H 0.07 0.77 7.69 -51.93 -0.40 0.37 16 5 O -0.37 -3.78 10.39 -35.23 -0.37 -4.15 16 6 C 0.06 0.40 6.84 37.20 0.25 0.66 16 7 C -0.15 -0.95 6.14 -26.59 -0.16 -1.11 16 8 C -0.12 -0.85 5.18 -26.55 -0.14 -0.99 16 9 C -0.14 -1.27 2.22 -91.64 -0.20 -1.47 16 10 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 11 C 0.52 6.22 6.90 -10.98 -0.08 6.14 16 12 O -0.53 -8.08 14.01 5.56 0.08 -8.01 16 13 N -0.73 -8.12 5.46 -60.29 -0.33 -8.45 16 14 C 0.12 1.66 5.67 -4.04 -0.02 1.64 16 15 C -0.14 -2.10 5.44 -26.73 -0.15 -2.24 16 16 C 0.16 3.27 6.26 -4.04 -0.03 3.25 16 17 N -0.75 -19.06 5.60 -59.92 -0.34 -19.40 16 18 C -0.33 -9.57 9.99 -15.06 -0.15 -9.72 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.05 -1.37 5.50 -17.43 -0.10 -1.46 16 21 N -0.95 -29.42 13.70 55.49 0.76 -28.66 16 22 Si 1.08 26.17 29.92 -169.99 -5.09 21.09 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H 0.10 0.91 8.06 -52.49 -0.42 0.49 16 27 H 0.10 1.06 7.83 -52.49 -0.41 0.65 16 28 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.10 0.53 8.14 -51.92 -0.42 0.10 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.48 7.67 -51.93 -0.40 0.09 16 35 H 0.40 3.53 7.96 -40.82 -0.32 3.21 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.37 9.43 6.50 -40.82 -0.27 9.16 16 43 H 0.25 7.75 6.77 -40.82 -0.28 7.47 16 LS Contribution 349.94 15.07 5.27 5.27 Total: -1.00 -34.16 349.94 -7.94 -42.10 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -7.20 Total: 7.17 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -0.74 Total: -6.97 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: 0.10 Total: -56.51 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -0.29 Total: -12.15 kcal Atomic # 14 Polarization: 26.17 SS G_CDS: -5.09 Total: 21.09 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.16 -7.94 -42.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158310418.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.097 kcal (2) G-P(sol) polarization free energy of solvation -34.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds