Wall clock time and date at job start Tue Mar 31 2020 05:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47583 * 2 1 4 4 C 1.52996 * 109.47583 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47442 * 179.97438 * 4 3 2 6 6 C 1.37101 * 120.00027 * 264.54252 * 5 4 3 7 7 H 1.07996 * 119.99992 * 146.01898 * 6 5 4 8 8 C 1.38949 * 120.00070 * 326.01338 * 6 5 4 9 9 N 1.31409 * 119.99993 * 337.80862 * 8 6 5 10 10 Si 1.86797 * 120.00198 * 157.80095 * 8 6 5 11 11 H 1.48503 * 109.46946 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47232 * 119.99925 * 10 8 6 13 13 H 1.48499 * 109.47612 * 240.00423 * 10 8 6 14 14 C 1.34771 * 119.99999 * 84.54015 * 5 4 3 15 15 O 1.21291 * 120.00285 * 0.02562 * 14 5 4 16 16 C 1.50701 * 120.00335 * 180.02562 * 14 5 4 17 17 C 1.52995 * 109.47430 * 179.97438 * 16 14 5 18 18 N 1.46500 * 109.47094 * 179.97438 * 17 16 14 19 19 C 1.34780 * 120.00089 * 180.02562 * 18 17 16 20 20 O 1.21286 * 119.99602 * 0.02562 * 19 18 17 21 21 C 1.50695 * 120.00192 * 180.02562 * 19 18 17 22 22 C 1.53006 * 117.49807 * 248.62139 * 21 19 18 23 23 C 1.53004 * 117.49836 * 179.97438 * 21 19 18 24 24 H 1.08991 * 109.47521 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46785 * 300.00160 * 1 2 3 26 26 H 1.09001 * 109.47116 * 59.99981 * 1 2 3 27 27 H 1.09001 * 109.47233 * 239.99855 * 2 1 3 28 28 H 1.09001 * 109.47116 * 120.00019 * 2 1 3 29 29 H 1.09006 * 109.47191 * 60.00088 * 3 2 1 30 30 H 1.09001 * 109.46910 * 300.00145 * 3 2 1 31 31 H 1.09006 * 109.46785 * 59.99840 * 4 3 2 32 32 H 1.09001 * 109.47116 * 300.00019 * 4 3 2 33 33 H 0.97003 * 120.00164 * 180.02562 * 9 8 6 34 34 H 1.09006 * 109.46928 * 59.99991 * 16 14 5 35 35 H 1.09001 * 109.47379 * 300.00492 * 16 14 5 36 36 H 1.08997 * 109.47270 * 300.00156 * 17 16 14 37 37 H 1.09000 * 109.46896 * 60.00559 * 17 16 14 38 38 H 0.97004 * 120.00135 * 0.02562 * 18 17 16 39 39 H 1.09002 * 115.55208 * 34.32745 * 21 19 18 40 40 H 1.09001 * 117.49768 * 359.97438 * 22 21 19 41 41 H 1.09000 * 117.49986 * 145.02247 * 22 21 19 42 42 H 1.09006 * 117.49723 * 214.97587 * 23 21 19 43 43 H 1.08992 * 117.49922 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.3939 3.4315 -1.1821 7 1 4.2245 4.4902 -1.3121 8 6 4.9521 2.6856 -2.2131 9 7 5.5557 1.5486 -1.9492 10 14 4.8443 3.2990 -3.9741 11 1 4.1201 4.5952 -4.0034 12 1 6.2134 3.4851 -4.5182 13 1 4.1140 2.3049 -4.8009 14 6 4.1779 3.4966 1.1615 15 8 3.8815 2.9587 2.2075 16 6 4.6798 4.9176 1.1609 17 6 4.7193 5.4452 2.5965 18 7 5.2077 6.8263 2.5959 19 6 5.3273 7.4994 3.7575 20 8 5.0310 6.9614 4.8033 21 6 5.8292 8.9203 3.7568 22 6 7.2063 9.1834 4.3696 23 6 5.9420 9.6303 5.1074 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9562 -0.8900 31 1 3.9337 0.9284 -0.8892 32 1 3.9330 0.9287 0.8909 33 1 5.9457 1.0280 -2.6688 34 1 4.0115 5.5387 0.5643 35 1 5.6823 4.9487 0.7342 36 1 3.7166 5.4142 3.0227 37 1 5.3873 4.8243 3.1935 38 1 5.4451 7.2565 1.7595 39 1 5.5383 9.5213 2.8952 40 1 7.7490 8.3288 4.7736 41 1 7.8216 9.9576 3.9112 42 1 5.7259 10.6984 5.1341 43 1 5.6528 9.0699 5.9963 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180849469.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:21 Heat of formation + Delta-G solvation = -67.111925 kcal Electronic energy + Delta-G solvation = -22083.816257 eV Core-core repulsion = 18743.238855 eV Total energy + Delta-G solvation = -3340.577401 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.81240 -38.67867 -36.36900 -35.51015 -34.58707 -33.96624 -31.56262 -30.54778 -28.32045 -25.27437 -24.87386 -23.15589 -22.56955 -21.66921 -20.41916 -20.08552 -19.05292 -17.55427 -16.59226 -16.22471 -15.57262 -15.28172 -14.98420 -14.74101 -14.61309 -14.20017 -14.03810 -13.77056 -13.39453 -12.63081 -12.53197 -12.49846 -12.22583 -12.03730 -11.70838 -11.44774 -11.35990 -11.23308 -11.01870 -10.80423 -10.74981 -10.61158 -10.58165 -10.49554 -10.35472 -10.20934 -9.75412 -9.73668 -9.13892 -8.82182 -8.47917 -7.58369 -6.45144 -4.11906 2.59466 3.03911 3.16287 3.18778 3.25486 3.77196 3.84799 4.04207 4.60545 4.67397 4.75173 4.78899 4.94660 5.06224 5.42423 5.44504 5.49075 5.53949 5.63489 5.66009 5.71470 5.80310 5.97997 5.99848 6.08536 6.24961 6.25919 6.39093 6.43000 6.46424 6.51370 6.60450 6.72412 6.74228 6.84423 7.11632 7.30839 7.45485 7.67984 7.86567 8.30528 8.38577 9.00434 9.45916 9.89852 10.55893 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015638 B = 0.003905 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.038684 B = 7168.564368 C = 8527.687324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.128 4.128 4 C 0.114 3.886 5 N -0.436 5.436 6 C -0.342 4.342 7 H 0.091 0.909 8 C 0.044 3.956 9 N -0.855 5.855 10 Si 0.912 3.088 11 H -0.268 1.268 12 H -0.281 1.281 13 H -0.279 1.279 14 C 0.470 3.530 15 O -0.604 6.604 16 C -0.130 4.130 17 C 0.136 3.864 18 N -0.724 5.724 19 C 0.537 3.463 20 O -0.543 6.543 21 C -0.193 4.193 22 C -0.154 4.154 23 C -0.150 4.150 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.107 0.893 32 H 0.051 0.949 33 H 0.270 0.730 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.400 0.600 39 H 0.123 0.877 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.407 9.954 2.143 10.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.167 4.167 4 C -0.009 4.009 5 N -0.154 5.154 6 C -0.470 4.470 7 H 0.108 0.892 8 C -0.162 4.162 9 N -0.491 5.491 10 Si 0.738 3.262 11 H -0.192 1.192 12 H -0.207 1.207 13 H -0.204 1.204 14 C 0.258 3.742 15 O -0.491 6.491 16 C -0.171 4.171 17 C 0.012 3.988 18 N -0.374 5.374 19 C 0.323 3.677 20 O -0.420 6.420 21 C -0.215 4.215 22 C -0.191 4.191 23 C -0.187 4.187 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.124 0.876 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.234 0.766 39 H 0.141 0.859 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.673 9.094 3.270 9.687 hybrid contribution 0.111 0.452 -1.692 1.754 sum -0.562 9.546 1.578 9.692 Atomic orbital electron populations 1.21756 0.96648 1.00679 1.01471 1.21425 0.94972 0.97755 1.01596 1.21905 0.97932 0.95526 1.01315 1.21436 0.91076 0.84815 1.03579 1.43474 1.54939 1.12030 1.04909 1.19461 1.41495 0.95422 0.90606 0.89179 1.25322 0.94175 0.96309 1.00404 1.69954 1.31116 1.14901 1.33126 0.86124 0.78138 0.79216 0.82704 1.19175 1.20724 1.20449 1.20083 0.81940 0.88342 0.83860 1.90559 1.55979 1.70854 1.31676 1.21502 1.03628 0.96283 0.95645 1.21137 1.00444 0.79945 0.97245 1.46028 1.67067 1.15378 1.08960 1.19618 0.77630 0.86697 0.83721 1.90704 1.49970 1.69731 1.31642 1.22220 1.03608 0.95370 1.00259 1.22940 0.89695 1.03641 1.02871 1.22945 1.00657 1.00345 0.94791 0.93420 0.93061 0.93071 0.92290 0.92376 0.92800 0.92444 0.87559 0.93037 0.91996 0.89877 0.88980 0.91092 0.90989 0.76639 0.85916 0.88222 0.87871 0.88076 0.87435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.12 -2.03 5.93 -26.74 -0.16 -2.19 16 3 C -0.13 -2.61 5.50 -26.74 -0.15 -2.76 16 4 C 0.11 2.70 4.90 -4.04 -0.02 2.68 16 5 N -0.44 -10.66 2.56 -114.81 -0.29 -10.95 16 6 C -0.34 -8.24 8.70 -14.93 -0.13 -8.37 16 7 H 0.09 2.04 6.97 -52.49 -0.37 1.67 16 8 C 0.04 1.07 4.92 -17.47 -0.09 0.98 16 9 N -0.85 -21.80 11.34 55.50 0.63 -21.17 16 10 Si 0.91 18.54 29.61 -169.99 -5.03 13.50 16 11 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 12 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 13 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 14 C 0.47 11.14 7.60 -10.99 -0.08 11.06 16 15 O -0.60 -15.85 15.65 5.55 0.09 -15.77 16 16 C -0.13 -2.43 4.47 -27.88 -0.12 -2.55 16 17 C 0.14 2.43 4.96 -4.04 -0.02 2.41 16 18 N -0.72 -10.32 5.56 -60.30 -0.33 -10.66 16 19 C 0.54 8.09 7.61 -10.99 -0.08 8.01 16 20 O -0.54 -10.51 16.26 5.55 0.09 -10.42 16 21 C -0.19 -2.05 6.19 -91.77 -0.57 -2.62 16 22 C -0.15 -1.41 10.24 -26.70 -0.27 -1.68 16 23 C -0.15 -1.45 10.05 -26.70 -0.27 -1.72 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.11 2.65 5.35 -51.93 -0.28 2.37 16 32 H 0.05 1.28 7.59 -51.93 -0.39 0.88 16 33 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 34 H 0.08 1.41 7.65 -51.93 -0.40 1.01 16 35 H 0.09 1.67 8.10 -51.93 -0.42 1.25 16 36 H 0.07 1.40 8.10 -51.93 -0.42 0.98 16 37 H 0.07 1.45 8.10 -51.93 -0.42 1.03 16 38 H 0.40 4.42 8.47 -40.82 -0.35 4.08 16 39 H 0.12 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.11 1.23 7.67 -51.93 -0.40 0.83 16 LS Contribution 359.14 15.07 5.41 5.41 Total: -1.00 -30.50 359.14 -8.26 -38.77 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -7.23 Total: 9.79 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -1.59 Total: 1.50 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 0.00 Total: -42.78 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: 0.18 Total: -26.19 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.50 -8.26 -38.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180849469.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.345 kcal (2) G-P(sol) polarization free energy of solvation -30.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds