Wall clock time and date at job start Tue Mar 31 2020 05:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47503 * 2 1 4 4 C 1.52992 * 109.47172 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.47264 * 179.97438 * 4 3 2 6 6 C 1.37096 * 120.00042 * 270.00158 * 5 4 3 7 7 H 1.07998 * 119.99881 * 143.21005 * 6 5 4 8 8 C 1.38952 * 119.99716 * 323.21150 * 6 5 4 9 9 N 1.31402 * 119.99959 * 338.61154 * 8 6 5 10 10 Si 1.86798 * 119.99621 * 158.61366 * 8 6 5 11 11 H 1.48498 * 109.47552 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.47109 * 120.00248 * 10 8 6 13 13 H 1.48500 * 109.47262 * 239.99506 * 10 8 6 14 14 C 1.34778 * 119.99713 * 89.99389 * 5 4 3 15 15 O 1.21294 * 120.00235 * 355.59762 * 14 5 4 16 16 C 1.50700 * 119.99404 * 175.86302 * 14 5 4 17 17 H 1.09001 * 109.47295 * 47.52593 * 16 14 5 18 18 C 1.52990 * 109.47495 * 287.52022 * 16 14 5 19 19 N 1.46504 * 109.46653 * 167.52100 * 16 14 5 20 20 C 1.46768 * 124.34888 * 239.72710 * 19 16 14 21 21 C 1.54660 * 105.37956 * 162.85607 * 20 19 16 22 22 C 1.54624 * 101.68828 * 25.76868 * 21 20 19 23 23 C 1.34420 * 124.34952 * 60.02823 * 19 16 14 24 24 O 1.21283 * 124.94174 * 0.38490 * 23 19 16 25 25 H 1.09004 * 109.46815 * 59.99951 * 1 2 3 26 26 H 1.09003 * 109.47568 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47402 * 300.00276 * 1 2 3 28 28 H 1.09007 * 109.47052 * 239.99727 * 2 1 3 29 29 H 1.08996 * 109.47068 * 120.00225 * 2 1 3 30 30 H 1.09002 * 109.46742 * 59.99705 * 3 2 1 31 31 H 1.09004 * 109.46602 * 299.99827 * 3 2 1 32 32 H 1.09002 * 109.47608 * 60.00137 * 4 3 2 33 33 H 1.09004 * 109.46900 * 299.99898 * 4 3 2 34 34 H 0.97004 * 120.00033 * 185.09263 * 9 8 6 35 35 H 1.09005 * 109.47219 * 185.66760 * 18 16 14 36 36 H 1.08998 * 109.47594 * 305.66795 * 18 16 14 37 37 H 1.09000 * 109.46982 * 65.66846 * 18 16 14 38 38 H 1.09001 * 110.24471 * 281.98424 * 20 19 16 39 39 H 1.08997 * 110.24453 * 43.98769 * 20 19 16 40 40 H 1.09002 * 111.19283 * 267.59098 * 21 20 19 41 41 H 1.09000 * 110.85127 * 143.79142 * 21 20 19 42 42 H 1.08998 * 110.48891 * 216.30967 * 22 21 20 43 43 H 1.08999 * 110.60209 * 93.71894 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8236 -0.0013 6 6 4.2865 3.4695 -1.1888 7 1 4.0646 4.5224 -1.2821 8 6 4.8030 2.7696 -2.2724 9 7 5.4562 1.6461 -2.0778 10 14 4.5686 3.4257 -4.0055 11 1 3.8048 4.6981 -3.9542 12 1 5.8956 3.6702 -4.6259 13 1 3.8199 2.4306 -4.8146 14 6 4.2835 3.4593 1.1657 15 8 4.0065 2.9173 2.2148 16 6 4.8737 4.8459 1.1667 17 1 4.3422 5.4676 0.4462 18 6 6.3527 4.7709 0.7824 19 7 4.7456 5.4301 2.5041 20 6 4.0138 6.6673 2.8006 21 6 3.7771 6.6475 4.3289 22 6 4.9474 5.7618 4.8157 23 6 5.2880 4.9050 3.6162 24 8 5.9534 3.8916 3.6529 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9562 -0.8901 32 1 3.9330 0.9287 -0.8909 33 1 3.9336 0.9284 0.8892 34 1 5.8801 1.1959 -2.8251 35 1 6.8041 5.7583 0.8805 36 1 6.8645 4.0703 1.4422 37 1 6.4433 4.4309 -0.2492 38 1 4.6106 7.5351 2.5198 39 1 3.0604 6.6773 2.2726 40 1 2.8166 6.1937 4.5731 41 1 3.8488 7.6521 4.7456 42 1 4.6318 5.1386 5.6523 43 1 5.8012 6.3767 5.1001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181294715.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:34 Heat of formation + Delta-G solvation = -74.415026 kcal Electronic energy + Delta-G solvation = -23751.354127 eV Core-core repulsion = 20410.460040 eV Total energy + Delta-G solvation = -3340.894087 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.05481 -38.25230 -35.73556 -35.27120 -33.95053 -33.11606 -31.46202 -29.32702 -28.03168 -27.16580 -24.94197 -24.00185 -22.39567 -21.60464 -20.44757 -19.53501 -18.52244 -16.92762 -16.28379 -16.09611 -15.53435 -14.72578 -14.63645 -14.43128 -13.88745 -13.83128 -13.36691 -13.17378 -13.01399 -12.98022 -12.50545 -12.49883 -12.18410 -11.93696 -11.55740 -11.45742 -11.30771 -11.27397 -11.12204 -10.89885 -10.85649 -10.75302 -10.52067 -10.46248 -10.29821 -10.15566 -9.67331 -9.12058 -8.99190 -8.61198 -7.86530 -7.42479 -6.36145 -4.05469 3.07954 3.19486 3.21561 3.25725 3.54234 3.94685 4.12439 4.66565 4.68228 4.86707 4.95494 4.97187 5.32526 5.51456 5.55012 5.63549 5.67690 5.69804 5.78495 5.81374 5.98827 6.01899 6.06591 6.13145 6.13797 6.27165 6.38056 6.44053 6.52170 6.54262 6.66225 6.78317 6.88311 7.03369 7.13019 7.22740 7.36607 7.53576 7.80298 7.97784 8.38501 8.88584 9.09801 9.57529 10.01397 10.64703 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014235 B = 0.006494 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.501738 B = 4310.883945 C = 5472.971699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C -0.125 4.125 4 C 0.116 3.884 5 N -0.439 5.439 6 C -0.342 4.342 7 H 0.087 0.913 8 C 0.047 3.953 9 N -0.856 5.856 10 Si 0.910 3.090 11 H -0.268 1.268 12 H -0.281 1.281 13 H -0.279 1.279 14 C 0.464 3.536 15 O -0.581 6.581 16 C 0.158 3.842 17 H 0.098 0.902 18 C -0.148 4.148 19 N -0.609 5.609 20 C 0.105 3.895 21 C -0.129 4.129 22 C -0.155 4.155 23 C 0.522 3.478 24 O -0.511 6.511 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.104 0.896 33 H 0.051 0.949 34 H 0.270 0.730 35 H 0.046 0.954 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.581 8.444 4.403 10.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.164 4.164 4 C -0.007 4.007 5 N -0.158 5.158 6 C -0.470 4.470 7 H 0.104 0.896 8 C -0.159 4.159 9 N -0.492 5.492 10 Si 0.736 3.264 11 H -0.192 1.192 12 H -0.207 1.207 13 H -0.205 1.205 14 C 0.251 3.749 15 O -0.465 6.465 16 C 0.052 3.948 17 H 0.115 0.885 18 C -0.206 4.206 19 N -0.345 5.345 20 C -0.018 4.018 21 C -0.167 4.167 22 C -0.196 4.196 23 C 0.309 3.691 24 O -0.385 6.385 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.122 0.878 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.113 0.887 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.305 7.385 4.733 9.771 hybrid contribution -0.164 0.383 -1.113 1.188 sum -4.468 7.768 3.620 9.665 Atomic orbital electron populations 1.21751 0.96701 1.00624 1.01396 1.21435 0.94910 0.97888 1.01569 1.21875 0.98066 0.95309 1.01120 1.21391 0.91047 0.84964 1.03315 1.43375 1.56121 1.12157 1.04151 1.19352 1.44188 0.95663 0.87824 0.89561 1.25342 0.94510 0.96048 1.00045 1.69866 1.29354 1.17698 1.32245 0.86154 0.78304 0.79169 0.82760 1.19220 1.20706 1.20507 1.20524 0.81555 0.88515 0.84325 1.90560 1.55812 1.68434 1.31656 1.20615 0.98291 0.94206 0.81667 0.88455 1.21915 0.93408 1.01028 1.04255 1.48117 1.53568 1.25026 1.07763 1.22019 0.96766 0.87069 0.95992 1.22575 0.98959 1.00462 0.94727 1.22311 0.99672 0.99246 0.98345 1.20532 0.79212 0.84482 0.84884 1.90697 1.38907 1.23532 1.85322 0.93076 0.93458 0.93154 0.92269 0.92468 0.93155 0.92381 0.87792 0.93096 0.91959 0.93506 0.91811 0.89030 0.91530 0.90901 0.90222 0.89782 0.88693 0.88628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 37.16 0.37 -1.79 16 2 C -0.12 -2.11 5.93 -26.73 -0.16 -2.26 16 3 C -0.13 -2.62 5.54 -26.73 -0.15 -2.77 16 4 C 0.12 2.86 4.97 -4.04 -0.02 2.84 16 5 N -0.44 -11.09 2.53 -114.81 -0.29 -11.38 16 6 C -0.34 -8.38 7.28 -14.93 -0.11 -8.49 16 7 H 0.09 2.00 6.74 -52.49 -0.35 1.64 16 8 C 0.05 1.16 4.96 -17.47 -0.09 1.07 16 9 N -0.86 -22.27 11.40 55.50 0.63 -21.63 16 10 Si 0.91 18.88 29.61 -169.99 -5.03 13.85 16 11 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 12 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 13 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 14 C 0.46 11.70 6.77 -10.99 -0.07 11.63 16 15 O -0.58 -16.30 13.97 -14.31 -0.20 -16.50 16 16 C 0.16 3.29 2.56 -69.09 -0.18 3.11 16 17 H 0.10 1.86 6.85 -51.93 -0.36 1.50 16 18 C -0.15 -3.04 8.96 37.15 0.33 -2.71 16 19 N -0.61 -11.23 2.71 -166.05 -0.45 -11.68 16 20 C 0.11 1.35 7.31 -3.02 -0.02 1.33 16 21 C -0.13 -1.39 7.19 -25.00 -0.18 -1.57 16 22 C -0.16 -2.10 6.86 -26.74 -0.18 -2.28 16 23 C 0.52 10.38 6.70 -10.86 -0.07 10.31 16 24 O -0.51 -12.73 15.10 -14.30 -0.22 -12.94 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.10 2.68 5.46 -51.93 -0.28 2.40 16 33 H 0.05 1.34 7.49 -51.93 -0.39 0.95 16 34 H 0.27 6.63 8.32 -40.82 -0.34 6.29 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 1.49 6.96 -51.93 -0.36 1.13 16 37 H 0.09 2.00 6.85 -51.93 -0.36 1.64 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 344.23 15.07 5.19 5.19 Total: -1.00 -32.33 344.23 -8.05 -40.38 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -7.15 Total: 6.34 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -0.53 Total: 8.40 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: -0.11 Total: -44.70 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.42 Total: -29.45 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.33 -8.05 -40.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181294715.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.037 kcal (2) G-P(sol) polarization free energy of solvation -32.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds