Wall clock time and date at job start Tue Mar 31 2020 05:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47157 * 2 1 4 4 H 1.08998 * 109.47109 * 305.00420 * 3 2 1 5 5 C 1.50697 * 109.47303 * 184.99630 * 3 2 1 6 6 H 1.07991 * 120.00449 * 239.72787 * 5 3 2 7 7 C 1.37885 * 119.99686 * 60.00618 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48493 * 109.47326 * 90.00142 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99892 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99603 * 9 7 5 13 13 N 1.46507 * 109.46582 * 64.99992 * 3 2 1 14 14 C 1.34770 * 120.00008 * 274.99697 * 13 3 2 15 15 O 1.21283 * 120.00231 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99983 * 179.97438 * 14 13 3 17 17 N 1.46499 * 109.47537 * 180.02562 * 16 14 13 18 18 C 1.46765 * 124.35268 * 269.73183 * 17 16 14 19 19 C 1.54655 * 105.38342 * 162.84758 * 18 17 16 20 20 C 1.54630 * 101.68505 * 25.76941 * 19 18 17 21 21 H 1.09000 * 110.48643 * 93.66376 * 20 19 18 22 22 C 1.53006 * 110.59755 * 216.25403 * 20 19 18 23 23 C 1.52995 * 109.47066 * 181.29391 * 22 20 19 24 24 C 1.34424 * 124.34665 * 90.02303 * 17 16 14 25 25 O 1.21281 * 124.94545 * 0.43419 * 24 17 16 26 26 H 1.09000 * 109.47171 * 59.99755 * 1 2 3 27 27 H 1.08993 * 109.47092 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47009 * 300.00022 * 1 2 3 29 29 H 1.09002 * 109.47049 * 240.00557 * 2 1 3 30 30 H 1.09000 * 109.47171 * 120.00245 * 2 1 3 31 31 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 32 32 H 0.97004 * 119.99614 * 94.99970 * 13 3 2 33 33 H 1.09004 * 109.47492 * 300.00510 * 16 14 13 34 34 H 1.09004 * 109.47259 * 60.00396 * 16 14 13 35 35 H 1.08997 * 110.24148 * 281.97729 * 18 17 16 36 36 H 1.09006 * 110.24132 * 43.97527 * 18 17 16 37 37 H 1.08998 * 111.19783 * 267.59531 * 19 18 17 38 38 H 1.09002 * 110.85338 * 143.78874 * 19 18 17 39 39 H 1.09004 * 109.46558 * 301.29142 * 22 20 19 40 40 H 1.08998 * 109.46935 * 61.29133 * 22 20 19 41 41 H 1.08998 * 109.47306 * 59.99525 * 23 22 20 42 42 H 1.09002 * 109.47542 * 179.97438 * 23 22 20 43 43 H 1.09006 * 109.47219 * 300.00114 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1237 6 1 4.1470 1.8928 0.6502 7 6 4.1433 0.8785 -1.2280 8 7 3.4064 0.3324 -2.1705 9 14 6.0046 0.8876 -1.3851 10 1 6.5600 -0.3407 -0.7622 11 1 6.3799 0.9274 -2.8214 12 1 6.5537 2.0834 -0.6967 13 7 1.6524 2.0975 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3396 2.6320 0.4345 16 6 0.0362 3.3375 2.6550 17 7 -1.3227 3.8697 2.5273 18 6 -1.6416 5.2211 2.0517 19 6 -3.1400 5.1791 1.6711 20 6 -3.6603 4.0362 2.5733 21 1 -4.0545 4.4367 3.5073 22 6 -4.7328 3.2224 1.8462 23 6 -5.2518 2.1204 2.7720 24 6 -2.4375 3.1851 2.8362 25 8 -2.4599 2.0504 3.2639 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 3.8296 -0.0660 -2.9471 32 1 2.2719 2.1230 1.9979 33 1 0.0672 2.6127 3.4686 34 1 0.7275 4.1528 2.8682 35 1 -1.4710 5.9498 2.8441 36 1 -1.0382 5.4652 1.1773 37 1 -3.2722 4.9351 0.6171 38 1 -3.6289 6.1222 1.9154 39 1 -5.5568 3.8777 1.5637 40 1 -4.3031 2.7725 0.9512 41 1 -5.6815 2.5703 3.6670 42 1 -6.0162 1.5409 2.2543 43 1 -4.4278 1.4652 3.0546 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183673956.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:45 Heat of formation + Delta-G solvation = -82.906129 kcal Electronic energy + Delta-G solvation = -23269.940418 eV Core-core repulsion = 19928.678129 eV Total energy + Delta-G solvation = -3341.262289 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.60419 -38.74988 -36.26018 -35.18426 -34.44227 -32.40156 -31.39110 -30.61297 -27.72640 -27.10747 -26.32891 -23.06001 -22.53964 -21.73064 -20.48891 -19.35288 -19.02403 -17.43654 -16.73126 -16.51444 -15.76131 -15.21090 -14.97707 -14.60871 -14.18509 -14.03099 -13.76264 -13.41185 -13.32184 -12.91361 -12.66801 -12.58906 -12.48094 -12.17946 -11.68240 -11.66236 -11.31171 -11.22475 -11.19390 -10.98818 -10.89079 -10.80235 -10.79284 -10.31166 -10.14757 -9.59848 -9.39743 -9.35700 -9.02454 -8.51778 -8.38171 -7.80132 -6.11948 -4.21753 2.67378 3.05510 3.23838 3.30757 3.32495 3.38942 4.16810 4.27724 4.40153 4.42867 4.64481 4.96527 5.12734 5.17531 5.19114 5.30270 5.39868 5.46919 5.51271 5.56141 5.60614 5.70841 5.80155 5.94578 6.00960 6.22369 6.43550 6.45474 6.53080 6.55191 6.72869 7.10813 7.22101 7.24133 7.40591 7.47796 7.63510 7.74834 7.91293 8.20104 8.31732 8.67681 8.78255 9.14450 9.45721 10.93144 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029980 B = 0.004036 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.732027 B = 6935.538635 C = 7320.851011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.047 0.953 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.708 5.708 14 C 0.483 3.517 15 O -0.538 6.538 16 C 0.103 3.897 17 N -0.600 5.600 18 C 0.105 3.895 19 C -0.127 4.127 20 C -0.120 4.120 21 H 0.104 0.896 22 C -0.103 4.103 23 C -0.164 4.164 24 C 0.526 3.474 25 O -0.524 6.524 26 H 0.047 0.953 27 H 0.021 0.979 28 H 0.040 0.960 29 H 0.098 0.902 30 H 0.030 0.970 31 H 0.264 0.736 32 H 0.388 0.612 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.048 0.952 42 H 0.050 0.950 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.230 10.288 10.026 18.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.065 0.935 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.357 5.357 14 C 0.266 3.734 15 O -0.416 6.416 16 C -0.023 4.023 17 N -0.333 5.333 18 C -0.018 4.018 19 C -0.165 4.165 20 C -0.141 4.141 21 H 0.122 0.878 22 C -0.141 4.141 23 C -0.221 4.221 24 C 0.314 3.686 25 O -0.400 6.400 26 H 0.066 0.934 27 H 0.040 0.960 28 H 0.059 0.941 29 H 0.116 0.884 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.220 0.780 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.693 9.532 9.376 17.762 hybrid contribution 1.465 0.012 0.157 1.474 sum -10.228 9.544 9.533 16.928 Atomic orbital electron populations 1.21813 0.98239 0.98034 1.01198 1.21933 0.92647 0.99806 1.02203 1.18764 0.94080 0.89177 0.80924 0.93471 1.21238 0.90745 1.38955 1.06355 0.92098 1.24894 0.98579 0.94825 0.95391 1.69902 1.35108 1.37432 1.09473 0.86459 0.84904 0.78436 0.77358 1.20544 1.21093 1.19885 1.46483 1.14555 1.56071 1.18583 1.20800 0.82998 0.80028 0.89592 1.90667 1.51151 1.59513 1.40294 1.21297 0.83233 0.99985 0.97798 1.47748 1.05309 1.14886 1.65351 1.22096 0.96689 0.83273 0.99719 1.22702 0.94268 0.98534 1.00954 1.21970 0.95029 0.96273 1.00859 0.87800 1.21346 0.96630 0.97271 0.98870 1.21951 1.02103 0.99252 0.98823 1.20775 0.85364 0.86187 0.76302 1.90652 1.86127 1.17302 1.45936 0.93435 0.95968 0.94091 0.88357 0.95082 0.92578 0.78019 0.87744 0.88004 0.91195 0.90086 0.89538 0.89444 0.91388 0.91343 0.93324 0.93107 0.89936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.51 37.16 0.32 -2.92 16 2 C -0.13 -3.19 5.45 -26.73 -0.15 -3.34 16 3 C 0.27 6.87 2.24 -69.08 -0.16 6.72 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -14.04 8.73 -34.44 -0.30 -14.35 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 8 N -0.88 -24.80 11.28 55.43 0.63 -24.18 16 9 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 N -0.71 -14.50 5.02 -54.93 -0.28 -14.78 16 14 C 0.48 9.44 6.47 -10.99 -0.07 9.36 16 15 O -0.54 -12.49 13.57 5.56 0.08 -12.42 16 16 C 0.10 1.49 6.41 -5.20 -0.03 1.45 16 17 N -0.60 -8.46 2.42 -173.67 -0.42 -8.88 16 18 C 0.11 1.10 7.36 -3.03 -0.02 1.07 16 19 C -0.13 -1.16 6.71 -25.00 -0.17 -1.33 16 20 C -0.12 -1.33 2.97 -90.62 -0.27 -1.59 16 21 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 22 C -0.10 -1.17 5.36 -26.73 -0.14 -1.31 16 23 C -0.16 -1.95 9.70 37.15 0.36 -1.59 16 24 C 0.53 8.10 7.42 -10.86 -0.08 8.02 16 25 O -0.52 -9.94 15.01 5.56 0.08 -9.86 16 26 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.04 0.98 5.64 -51.93 -0.29 0.69 16 29 H 0.10 2.71 5.94 -51.93 -0.31 2.40 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.39 6.80 8.54 -40.82 -0.35 6.45 16 33 H 0.10 1.46 7.92 -51.93 -0.41 1.05 16 34 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.09 0.88 7.92 -51.93 -0.41 0.47 16 38 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.08 1.24 5.70 -51.93 -0.30 0.94 16 LS Contribution 343.49 15.07 5.18 5.18 Total: -1.00 -32.86 343.49 -7.62 -40.48 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -7.06 Total: 7.04 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -0.81 Total: 1.89 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: -0.07 Total: -47.83 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: 0.16 Total: -22.27 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.86 -7.62 -40.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183673956.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.422 kcal (2) G-P(sol) polarization free energy of solvation -32.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds