Wall clock time and date at job start Tue Mar 31 2020 05:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47021 * 2 1 4 4 H 1.09000 * 109.47050 * 305.00249 * 3 2 1 5 5 C 1.50697 * 109.47239 * 184.99913 * 3 2 1 6 6 H 1.07994 * 120.00496 * 239.99942 * 5 3 2 7 7 C 1.37878 * 119.99687 * 60.00100 * 5 3 2 8 8 N 1.31518 * 120.00216 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00016 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47195 * 90.00222 * 9 7 5 11 11 H 1.48504 * 109.47636 * 210.00509 * 9 7 5 12 12 H 1.48508 * 109.47108 * 330.00152 * 9 7 5 13 13 N 1.46500 * 109.46998 * 65.00194 * 3 2 1 14 14 C 1.34779 * 119.99741 * 275.00368 * 13 3 2 15 15 O 1.21279 * 120.00369 * 359.97438 * 14 13 3 16 16 C 1.50708 * 119.99762 * 179.97438 * 14 13 3 17 17 N 1.46498 * 109.47033 * 179.97438 * 16 14 13 18 18 C 1.46767 * 124.34794 * 269.72928 * 17 16 14 19 19 C 1.54660 * 105.38035 * 162.85547 * 18 17 16 20 20 C 1.54630 * 101.68397 * 25.76703 * 19 18 17 21 21 H 1.09008 * 110.48187 * 216.30916 * 20 19 18 22 22 C 1.52999 * 110.48940 * 93.66800 * 20 19 18 23 23 C 1.52997 * 109.47008 * 178.76975 * 22 20 19 24 24 C 1.34418 * 124.34930 * 90.02528 * 17 16 14 25 25 O 1.21277 * 124.94379 * 0.43485 * 24 17 16 26 26 H 1.08992 * 109.47518 * 59.99913 * 1 2 3 27 27 H 1.09002 * 109.46905 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47446 * 299.99458 * 1 2 3 29 29 H 1.09004 * 109.46986 * 240.00810 * 2 1 3 30 30 H 1.08992 * 109.47518 * 120.00087 * 2 1 3 31 31 H 0.96999 * 120.00239 * 180.02562 * 8 7 5 32 32 H 0.96997 * 120.00110 * 94.99637 * 13 3 2 33 33 H 1.08994 * 109.47136 * 300.00021 * 16 14 13 34 34 H 1.09002 * 109.46457 * 59.99935 * 16 14 13 35 35 H 1.09001 * 110.24265 * 281.98169 * 18 17 16 36 36 H 1.08994 * 110.25051 * 43.97952 * 18 17 16 37 37 H 1.08994 * 111.19425 * 267.59175 * 19 18 17 38 38 H 1.09001 * 110.85380 * 143.78711 * 19 18 17 39 39 H 1.08997 * 109.46726 * 298.76875 * 22 20 19 40 40 H 1.09001 * 109.47048 * 58.76511 * 22 20 19 41 41 H 1.08997 * 109.47207 * 60.00190 * 23 22 20 42 42 H 1.09006 * 109.46837 * 179.97438 * 23 22 20 43 43 H 1.08997 * 109.47295 * 299.99552 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1734 9 14 6.0048 0.8814 -1.3819 10 1 6.5548 -0.3501 -0.7603 11 1 6.3829 0.9227 -2.8174 12 1 6.5568 2.0740 -0.6902 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6643 1.3670 15 8 -0.3394 2.6326 0.4342 16 6 0.0361 3.3375 2.6550 17 7 -1.3224 3.8707 2.5269 18 6 -1.6400 5.2223 2.0513 19 6 -3.1384 5.1815 1.6703 20 6 -3.6598 4.0388 2.5722 21 1 -4.4233 3.4603 2.0518 22 6 -4.2131 4.6011 3.8831 23 6 -4.7498 3.4553 4.7433 24 6 -2.4377 3.1868 2.8353 25 8 -2.4609 2.0522 3.2629 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 3.8291 -0.0608 -2.9500 32 1 2.2719 2.1231 1.9978 33 1 0.0672 2.6129 3.4685 34 1 0.7275 4.1529 2.8680 35 1 -1.4693 5.9509 2.8439 36 1 -1.0363 5.4663 1.1773 37 1 -3.2705 4.9378 0.6162 38 1 -3.6268 6.1249 1.9146 39 1 -3.4182 5.1177 4.4209 40 1 -5.0197 5.3014 3.6663 41 1 -3.9431 2.7551 4.9601 42 1 -5.1435 3.8559 5.6775 43 1 -5.5447 2.9387 4.2054 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183673960.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:48 Heat of formation + Delta-G solvation = -84.177244 kcal Electronic energy + Delta-G solvation = -23160.363595 eV Core-core repulsion = 19819.046186 eV Total energy + Delta-G solvation = -3341.317409 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.64807 -38.75570 -36.31756 -35.19857 -34.38219 -32.40214 -31.42392 -30.65816 -27.75062 -27.11171 -26.33880 -23.09054 -22.86421 -21.61444 -20.51434 -19.35956 -19.13172 -17.33516 -16.78191 -15.98478 -15.77850 -15.56492 -15.07661 -14.63374 -14.27324 -14.06986 -13.91759 -13.39546 -13.24449 -12.93539 -12.76825 -12.65115 -12.44979 -12.15763 -11.81394 -11.67149 -11.48440 -11.28185 -11.22343 -10.98811 -10.94989 -10.80150 -10.76311 -10.31168 -10.14817 -9.59958 -9.53212 -9.37331 -9.02454 -8.51555 -8.37968 -7.80227 -6.11876 -4.21622 2.69184 3.03538 3.23896 3.30800 3.32530 3.38838 4.17067 4.24612 4.38111 4.40931 4.64035 4.86428 5.01154 5.13411 5.19156 5.27620 5.29735 5.44323 5.48885 5.54649 5.55768 5.66767 5.73366 5.81196 5.92763 6.02215 6.21090 6.45499 6.51097 6.53052 6.72865 7.10833 7.21361 7.24081 7.40620 7.47809 7.63524 7.74856 7.91255 8.19884 8.30792 8.67659 8.78331 9.14408 9.45788 10.93293 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035011 B = 0.003780 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.547850 B = 7405.045504 C = 7644.926116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.708 5.708 14 C 0.483 3.517 15 O -0.539 6.539 16 C 0.103 3.897 17 N -0.599 5.599 18 C 0.106 3.894 19 C -0.127 4.127 20 C -0.122 4.122 21 H 0.104 0.896 22 C -0.103 4.103 23 C -0.159 4.159 24 C 0.528 3.472 25 O -0.527 6.527 26 H 0.047 0.953 27 H 0.021 0.979 28 H 0.040 0.960 29 H 0.098 0.902 30 H 0.030 0.970 31 H 0.264 0.736 32 H 0.388 0.612 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.047 11.170 11.204 19.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.357 5.357 14 C 0.266 3.734 15 O -0.417 6.417 16 C -0.023 4.023 17 N -0.332 5.332 18 C -0.017 4.017 19 C -0.165 4.165 20 C -0.144 4.144 21 H 0.122 0.878 22 C -0.140 4.140 23 C -0.216 4.216 24 C 0.316 3.684 25 O -0.403 6.403 26 H 0.066 0.934 27 H 0.040 0.960 28 H 0.059 0.941 29 H 0.116 0.884 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.220 0.780 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.511 10.412 10.553 18.769 hybrid contribution 1.461 -0.076 0.090 1.466 sum -10.050 10.336 10.643 17.919 Atomic orbital electron populations 1.21817 0.98241 0.98048 1.01197 1.21931 0.92645 0.99816 1.02190 1.18765 0.94093 0.89173 0.80934 0.93442 1.21234 0.90726 1.39060 1.06250 0.92094 1.24896 0.98591 0.94835 0.95400 1.69902 1.35110 1.37553 1.09348 0.86459 0.84898 0.78436 0.77350 1.20545 1.21101 1.19881 1.46479 1.14540 1.56075 1.18587 1.20806 0.82997 0.80020 0.89589 1.90666 1.51180 1.59524 1.40296 1.21296 0.83241 0.99978 0.97789 1.47729 1.05294 1.14883 1.65310 1.22091 0.96701 0.83251 0.99674 1.22687 0.94460 0.98703 1.00635 1.22013 0.96965 0.97388 0.98042 0.87774 1.21368 1.00439 0.98264 0.93970 1.21838 1.01928 0.98621 0.99199 1.20712 0.85350 0.86048 0.76303 1.90699 1.86489 1.17302 1.45817 0.93423 0.95952 0.94110 0.88380 0.95070 0.92575 0.78013 0.87752 0.87986 0.91235 0.90089 0.89601 0.89321 0.91737 0.90892 0.91545 0.92822 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.51 37.16 0.32 -2.94 16 2 C -0.13 -3.20 5.45 -26.73 -0.15 -3.34 16 3 C 0.27 6.88 2.24 -69.08 -0.15 6.73 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.06 8.73 -34.44 -0.30 -14.36 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.84 11.29 55.43 0.63 -24.21 16 9 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 N -0.71 -14.55 5.02 -54.93 -0.28 -14.82 16 14 C 0.48 9.49 6.47 -10.98 -0.07 9.42 16 15 O -0.54 -12.59 13.57 5.56 0.08 -12.52 16 16 C 0.10 1.50 6.41 -5.19 -0.03 1.46 16 17 N -0.60 -8.50 2.42 -173.67 -0.42 -8.92 16 18 C 0.11 1.11 7.35 -3.02 -0.02 1.09 16 19 C -0.13 -1.16 6.72 -25.00 -0.17 -1.33 16 20 C -0.12 -1.36 2.97 -90.63 -0.27 -1.63 16 21 H 0.10 1.18 8.14 -51.92 -0.42 0.76 16 22 C -0.10 -0.89 5.35 -26.73 -0.14 -1.04 16 23 C -0.16 -1.56 9.71 37.16 0.36 -1.20 16 24 C 0.53 8.23 6.91 -10.86 -0.08 8.16 16 25 O -0.53 -10.25 16.35 5.56 0.09 -10.16 16 26 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.98 5.65 -51.93 -0.29 0.69 16 29 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.39 6.81 8.54 -40.82 -0.35 6.46 16 33 H 0.10 1.47 7.92 -51.93 -0.41 1.06 16 34 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.09 0.55 7.90 -51.93 -0.41 0.14 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.83 6.61 -51.93 -0.34 0.48 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 345.23 15.07 5.20 5.20 Total: -1.00 -33.25 345.23 -7.63 -40.88 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -7.11 Total: 6.31 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -0.80 Total: 2.70 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: -0.07 Total: -47.96 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: 0.17 Total: -22.67 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.25 -7.63 -40.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183673960.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.295 kcal (2) G-P(sol) polarization free energy of solvation -33.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds