Wall clock time and date at job start Tue Mar 31 2020 05:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47173 * 2 1 4 4 H 1.09002 * 110.43028 * 303.90954 * 3 2 1 5 5 C 1.54629 * 110.59647 * 181.29444 * 3 2 1 6 6 C 1.54657 * 101.68178 * 216.25013 * 5 3 2 7 7 N 1.46764 * 105.38310 * 25.76854 * 6 5 3 8 8 C 1.46500 * 124.35176 * 162.84991 * 7 6 5 9 9 C 1.50698 * 109.47583 * 269.72856 * 8 7 6 10 10 O 1.21286 * 119.99758 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00019 * 180.02562 * 9 8 7 12 12 C 1.46507 * 119.99912 * 180.02562 * 11 9 8 13 13 C 1.52992 * 109.47485 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47482 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47294 * 60.00559 * 19 17 15 21 21 H 1.48503 * 109.46954 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47431 * 300.00157 * 19 17 15 23 23 C 1.34418 * 111.29962 * 342.59009 * 7 6 5 24 24 O 1.21280 * 124.94517 * 180.69918 * 23 7 6 25 25 H 1.08996 * 109.47466 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47045 * 300.00386 * 1 2 3 27 27 H 1.09007 * 109.47085 * 60.00243 * 1 2 3 28 28 H 1.08998 * 109.47045 * 239.99614 * 2 1 3 29 29 H 1.08998 * 109.47150 * 120.00008 * 2 1 3 30 30 H 1.09002 * 110.97034 * 334.58360 * 5 3 2 31 31 H 1.09001 * 110.97066 * 98.31385 * 5 3 2 32 32 H 1.09000 * 110.40420 * 266.74062 * 6 5 3 33 33 H 1.09007 * 110.17872 * 144.67831 * 6 5 3 34 34 H 1.09002 * 109.47129 * 149.72462 * 8 7 6 35 35 H 1.09001 * 109.46596 * 29.72817 * 8 7 6 36 36 H 0.96992 * 120.00518 * 359.97438 * 11 9 8 37 37 H 1.09002 * 109.47280 * 59.99618 * 12 11 9 38 38 H 1.09001 * 109.46702 * 299.99811 * 12 11 9 39 39 H 1.09002 * 109.47103 * 59.99596 * 13 12 11 40 40 H 1.08998 * 109.46862 * 300.00408 * 13 12 11 41 41 H 1.09002 * 109.47153 * 59.99783 * 14 13 12 42 42 H 1.09001 * 109.46832 * 299.99974 * 14 13 12 43 43 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6296 1.9912 -0.8477 5 6 3.5857 1.4730 -0.0327 6 6 3.8939 2.6935 0.8657 7 7 2.7409 2.8157 1.7655 8 6 2.7412 3.5899 3.0092 9 6 3.1710 2.7058 4.1514 10 8 3.4492 1.5432 3.9468 11 7 3.2453 3.2068 5.4003 12 6 3.6637 2.3474 6.5106 13 6 3.6639 3.1560 7.8094 14 6 4.1002 2.2583 8.9690 15 6 4.1011 3.0550 10.2482 16 1 3.8183 4.0972 10.2355 17 6 4.4619 2.4530 11.4351 18 7 4.8058 1.1838 11.4506 19 14 4.4622 3.4404 13.0208 20 1 3.0949 3.9577 13.2821 21 1 4.8858 2.5691 14.1462 22 1 5.4067 4.5794 12.8945 23 6 1.6828 2.1304 1.2991 24 8 0.5991 2.0724 1.8406 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 4.0029 0.5583 0.3885 31 1 3.9513 1.6354 -1.0466 32 1 3.9972 3.5943 0.2607 33 1 4.8035 2.5176 1.4400 34 1 1.7376 3.9695 3.2012 35 1 3.4343 4.4261 2.9163 36 1 3.0225 4.1365 5.5640 37 1 4.6676 1.9687 6.3187 38 1 2.9713 1.5107 6.6032 39 1 2.6602 3.5351 8.0016 40 1 4.3565 3.9925 7.7165 41 1 5.1039 1.8789 8.7771 42 1 3.4072 1.4221 9.0618 43 1 5.0600 0.7604 12.2855 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183675502.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:38 Heat of formation + Delta-G solvation = -92.914324 kcal Electronic energy + Delta-G solvation = -21875.518864 eV Core-core repulsion = 18533.822587 eV Total energy + Delta-G solvation = -3341.696277 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.92121 -39.21862 -36.54279 -35.49514 -34.80963 -33.33598 -31.71847 -30.99067 -28.07407 -27.33819 -26.22099 -23.21719 -22.71941 -21.87135 -20.79671 -20.25279 -19.25127 -17.51179 -16.96167 -16.73719 -16.31758 -15.59173 -15.28658 -14.97138 -14.55328 -14.41743 -14.05246 -13.91891 -13.70371 -13.60446 -13.15916 -12.85585 -12.60704 -12.28816 -12.24652 -11.87837 -11.85022 -11.63193 -11.41887 -11.09762 -10.99907 -10.89072 -10.74831 -10.63678 -10.11517 -9.87803 -9.64200 -9.49299 -9.16663 -8.82243 -8.80683 -8.37862 -6.02484 -4.05835 2.35206 2.71029 2.71352 3.31512 3.36261 3.37876 3.48326 4.02543 4.18731 4.42401 4.43561 4.71321 4.79624 4.83760 4.96747 5.00996 5.11227 5.22487 5.25468 5.33160 5.39941 5.50005 5.60210 5.69702 5.73738 5.76044 5.84138 6.02821 6.14376 6.16494 6.31823 6.45235 6.58253 6.81043 6.89989 6.98761 7.62128 7.65225 7.74849 7.95987 8.02833 8.33613 8.38001 9.00628 9.58343 11.08821 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035701 B = 0.002545 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.095203 B =10999.421737 C =11184.317316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.104 4.104 3 C -0.120 4.120 4 H 0.107 0.893 5 C -0.127 4.127 6 C 0.105 3.895 7 N -0.604 5.604 8 C 0.106 3.894 9 C 0.488 3.512 10 O -0.534 6.534 11 N -0.725 5.725 12 C 0.117 3.883 13 C -0.120 4.120 14 C 0.024 3.976 15 C -0.523 4.523 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.527 3.473 24 O -0.522 6.522 25 H 0.051 0.949 26 H 0.081 0.919 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.399 0.601 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.018 0.982 42 H 0.019 0.981 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.734 4.675 -26.580 27.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.142 4.142 3 C -0.141 4.141 4 H 0.125 0.875 5 C -0.165 4.165 6 C -0.018 4.018 7 N -0.338 5.338 8 C -0.020 4.020 9 C 0.272 3.728 10 O -0.411 6.411 11 N -0.376 5.376 12 C -0.005 4.005 13 C -0.158 4.158 14 C -0.014 4.014 15 C -0.562 4.562 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C 0.315 3.685 24 O -0.398 6.398 25 H 0.070 0.930 26 H 0.100 0.900 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.232 0.768 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.045 3.682 -26.248 26.679 hybrid contribution 0.094 0.974 1.167 1.523 sum -2.951 4.656 -25.081 25.680 Atomic orbital electron populations 1.21957 0.95042 1.01745 1.03466 1.21357 0.96974 0.93307 1.02533 1.21983 0.96779 0.98578 0.96794 0.87528 1.22716 0.94366 0.98857 1.00582 1.22134 0.89377 0.98469 0.91846 1.47790 1.13914 1.50683 1.21370 1.21217 1.04760 0.93417 0.82590 1.21115 0.78227 0.89063 0.84394 1.90703 1.48760 1.17442 1.84147 1.46190 1.68852 1.14994 1.07611 1.21641 0.99929 0.93681 0.85271 1.21886 1.01044 0.99289 0.93618 1.19024 0.96821 0.94597 0.90920 1.21165 1.45733 0.96790 0.92489 0.92684 1.25033 0.95294 0.94938 0.99203 1.69956 1.45584 1.10700 1.27055 0.86633 0.78453 0.79895 0.82851 1.20221 1.21261 1.20244 1.20851 0.83466 0.77884 0.86342 1.90666 1.23871 1.61467 1.63750 0.92959 0.90027 0.93188 0.91177 0.91412 0.89494 0.89183 0.90882 0.90126 0.87080 0.87352 0.76779 0.91835 0.91833 0.92682 0.92710 0.96315 0.96288 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.70 37.16 0.36 -1.29 16 2 C -0.10 -0.95 5.36 -26.73 -0.14 -1.09 16 3 C -0.12 -1.05 2.97 -90.63 -0.27 -1.31 16 4 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 5 C -0.13 -0.85 6.71 -25.00 -0.17 -1.02 16 6 C 0.10 0.78 7.36 -3.03 -0.02 0.76 16 7 N -0.60 -6.58 2.42 -173.67 -0.42 -7.00 16 8 C 0.11 1.10 6.41 -5.19 -0.03 1.06 16 9 C 0.49 7.15 7.90 -10.99 -0.09 7.07 16 10 O -0.53 -10.14 16.43 5.55 0.09 -10.05 16 11 N -0.72 -10.20 5.56 -60.29 -0.33 -10.53 16 12 C 0.12 2.09 5.67 -4.04 -0.02 2.07 16 13 C -0.12 -2.35 5.27 -26.74 -0.14 -2.49 16 14 C 0.02 0.61 4.97 -27.88 -0.14 0.48 16 15 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 16 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 19 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.53 6.66 7.42 -10.86 -0.08 6.58 16 24 O -0.52 -8.51 15.01 5.56 0.08 -8.42 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 1.06 5.70 -51.93 -0.30 0.76 16 27 H 0.05 0.43 8.14 -51.92 -0.42 0.00 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 0.66 7.92 -51.93 -0.41 0.25 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.11 1.09 7.92 -51.93 -0.41 0.68 16 35 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.40 4.30 8.47 -40.82 -0.35 3.96 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 356.07 15.07 5.37 5.37 Total: -1.00 -35.78 356.07 -8.00 -43.78 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -7.35 Total: -0.78 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -1.16 Total: -2.65 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: -0.02 Total: -43.77 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: 0.17 Total: -18.47 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.78 -8.00 -43.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183675502.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.132 kcal (2) G-P(sol) polarization free energy of solvation -35.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds