Wall clock time and date at job start Tue Mar 31 2020 05:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00346 * 2 1 4 4 C 1.52997 * 109.47466 * 239.99781 * 3 2 1 5 5 O 1.42906 * 109.46831 * 0.02562 * 3 2 1 6 6 C 1.53006 * 109.47239 * 119.99493 * 3 2 1 7 7 C 1.50701 * 109.47180 * 180.02562 * 6 3 2 8 8 O 1.21273 * 119.99897 * 359.97438 * 7 6 3 9 9 N 1.34776 * 119.99804 * 180.02562 * 7 6 3 10 10 C 1.46924 * 120.63280 * 359.71807 * 9 7 6 11 11 C 1.52758 * 109.01112 * 233.58588 * 10 9 7 12 12 C 1.53041 * 109.38128 * 305.58911 * 11 10 9 13 13 N 1.46503 * 109.44558 * 181.25056 * 12 11 10 14 14 C 1.36942 * 119.99478 * 84.94244 * 13 12 11 15 15 H 1.07993 * 120.00487 * 359.97438 * 14 13 12 16 16 C 1.38814 * 119.99592 * 179.97438 * 14 13 12 17 17 N 1.31619 * 120.00114 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00127 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47009 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.47137 * 119.99908 * 18 16 14 21 21 H 1.48499 * 109.47234 * 240.00401 * 18 16 14 22 22 C 1.53035 * 109.53879 * 61.24006 * 12 11 10 23 23 C 1.46921 * 120.62849 * 179.97438 * 9 7 6 24 24 H 1.07999 * 119.99918 * 179.97438 * 1 2 3 25 25 H 1.07999 * 119.99739 * 0.02562 * 1 2 3 26 26 H 1.08007 * 120.00185 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47153 * 59.99773 * 4 3 2 28 28 H 1.09001 * 109.46832 * 299.99964 * 4 3 2 29 29 H 1.09004 * 109.47261 * 179.97438 * 4 3 2 30 30 H 0.96693 * 114.00047 * 60.00191 * 5 3 2 31 31 H 1.09000 * 109.47050 * 300.00336 * 6 3 2 32 32 H 1.09001 * 109.47002 * 60.00070 * 6 3 2 33 33 H 1.09008 * 109.58457 * 353.42286 * 10 9 7 34 34 H 1.09003 * 109.58705 * 113.84144 * 10 9 7 35 35 H 1.09000 * 109.56587 * 185.54777 * 11 10 9 36 36 H 1.09001 * 109.38354 * 65.51188 * 11 10 9 37 37 H 1.08998 * 109.45707 * 301.21577 * 12 11 10 38 38 H 0.96994 * 120.00462 * 264.93009 * 13 12 11 39 39 H 0.97007 * 120.00215 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.49930 * 178.68370 * 22 12 11 41 41 H 1.09003 * 109.52650 * 58.60204 * 22 12 11 42 42 H 1.08996 * 109.58959 * 246.15063 * 23 9 7 43 43 H 1.08993 * 109.58883 * 6.44054 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9432 1.3861 -1.2492 5 8 1.1349 2.3912 0.0006 6 6 2.9431 1.3861 1.2493 7 6 3.6962 2.6915 1.2497 8 8 3.5448 3.4791 0.3400 9 7 4.5388 2.9830 2.2603 10 6 4.7290 2.0412 3.3718 11 6 4.4802 2.7710 4.6906 12 6 5.3713 4.0133 4.7595 13 7 5.1556 4.6980 6.0366 14 6 5.8450 4.3009 7.1512 15 1 6.5474 3.4829 7.0889 16 6 5.6411 4.9500 8.3612 17 7 4.7855 5.9473 8.4370 18 14 6.5809 4.4081 9.8818 19 1 7.4747 3.2744 9.5335 20 1 7.3948 5.5411 10.3906 21 1 5.6209 3.9781 10.9300 22 6 5.0208 4.9590 3.6085 23 6 5.2804 4.2513 2.2743 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8501 -0.9354 0.0004 27 1 2.3166 1.3283 -2.1392 28 1 3.6515 0.5575 -1.2491 29 1 3.4880 2.3303 -1.2494 30 1 0.5440 2.4030 0.7658 31 1 2.3164 1.3284 2.1393 32 1 3.6514 0.5576 1.2494 33 1 4.0251 1.2145 3.2748 34 1 5.7495 1.6585 3.3560 35 1 4.7141 2.1087 5.5241 36 1 3.4336 3.0704 4.7465 37 1 6.4166 3.7152 4.6792 38 1 4.5247 5.4325 6.0927 39 1 4.6427 6.4006 9.2827 40 1 5.6397 5.8541 3.6718 41 1 3.9693 5.2384 3.6738 42 1 6.3467 4.0523 2.1675 43 1 4.9421 4.8815 1.4520 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200324843.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:56 Heat of formation + Delta-G solvation = -53.469750 kcal Electronic energy + Delta-G solvation = -22846.193640 eV Core-core repulsion = 19506.207808 eV Total energy + Delta-G solvation = -3339.985832 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.38911 -38.52539 -37.04362 -34.48233 -33.18613 -32.21206 -31.55599 -30.65391 -29.38238 -27.93630 -24.84919 -23.26489 -22.96376 -22.16168 -20.29434 -19.83070 -18.80006 -17.35448 -17.07164 -16.78057 -15.93210 -15.55423 -15.05141 -14.82427 -14.68106 -13.84777 -13.76423 -13.54343 -13.45962 -13.25651 -12.96509 -12.46661 -12.36222 -12.29780 -11.99673 -11.76039 -11.58812 -11.56507 -11.23041 -10.98507 -10.90345 -10.83803 -10.49081 -10.29032 -10.22661 -9.84551 -9.71067 -9.69027 -9.42209 -8.94360 -8.44084 -7.01044 -5.80824 -3.10207 1.93325 2.74541 3.11751 3.39730 3.45184 3.47699 4.08799 4.39696 4.54546 4.55506 4.79632 4.84321 4.98254 5.08203 5.29323 5.33374 5.34602 5.40975 5.48680 5.51911 5.54310 5.62960 5.71360 5.73971 5.89787 5.94816 6.00382 6.19008 6.22509 6.31223 6.35896 6.38742 6.45252 6.50557 6.63097 6.88278 7.01357 7.55935 7.56641 7.65566 8.33296 8.37364 9.48655 10.06305 10.40909 11.41746 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030737 B = 0.003380 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.737918 B = 8280.848004 C = 8609.860323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.187 4.187 3 C 0.177 3.823 4 C -0.146 4.146 5 O -0.538 6.538 6 C -0.165 4.165 7 C 0.515 3.485 8 O -0.527 6.527 9 N -0.609 5.609 10 C 0.107 3.893 11 C -0.152 4.152 12 C 0.179 3.821 13 N -0.725 5.725 14 C -0.240 4.240 15 H 0.071 0.929 16 C -0.013 4.013 17 N -0.932 5.932 18 Si 0.906 3.094 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.139 4.139 23 C 0.116 3.884 24 H 0.099 0.901 25 H 0.105 0.895 26 H 0.115 0.885 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.369 0.631 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.048 0.952 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.483 -12.517 -16.207 20.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.205 4.205 3 C 0.135 3.865 4 C -0.203 4.203 5 O -0.343 6.343 6 C -0.205 4.205 7 C 0.303 3.697 8 O -0.404 6.404 9 N -0.343 5.343 10 C -0.016 4.016 11 C -0.193 4.193 12 C 0.069 3.931 13 N -0.365 5.365 14 C -0.371 4.371 15 H 0.089 0.911 16 C -0.209 4.209 17 N -0.580 5.580 18 Si 0.737 3.263 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.178 4.178 23 C -0.006 4.006 24 H 0.117 0.883 25 H 0.123 0.877 26 H 0.133 0.867 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.113 0.887 30 H 0.216 0.784 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.217 0.783 39 H 0.065 0.935 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.119 -12.013 -17.111 21.309 hybrid contribution -0.059 -0.428 1.791 1.843 sum -4.178 -12.441 -15.320 20.173 Atomic orbital electron populations 1.23873 0.96056 1.02396 0.99493 1.23626 0.96770 0.98817 1.01304 1.19860 0.88026 0.83998 0.94595 1.21931 0.98838 1.04298 0.95259 1.86715 1.50094 1.48906 1.48620 1.22418 1.00419 0.97210 1.00478 1.20342 0.79218 0.88330 0.81814 1.90648 1.64273 1.50127 1.35344 1.48210 1.43684 1.19996 1.22394 1.21761 1.01392 0.91603 0.86844 1.22598 1.01810 1.00030 0.94855 1.20157 0.96341 0.90482 0.86132 1.42452 1.50480 1.39545 1.04013 1.19276 1.17302 1.13073 0.87464 0.91119 1.24757 0.99809 0.98482 0.97900 1.69675 1.38311 1.24677 1.25327 0.86137 0.79041 0.77679 0.83434 1.20551 1.21868 1.21881 1.22205 1.02275 0.99298 0.93975 1.21592 0.95427 0.84728 0.98875 0.88261 0.87687 0.86688 0.92332 0.91997 0.88689 0.78402 0.88655 0.88192 0.90675 0.91555 0.90663 0.92282 0.93449 0.78262 0.93524 0.90637 0.91894 0.91772 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 13.93 29.01 0.40 -1.01 16 2 C -0.19 -1.56 8.77 -36.03 -0.32 -1.87 16 3 C 0.18 1.84 0.94 -91.77 -0.09 1.75 16 4 C -0.15 -1.61 8.50 37.16 0.32 -1.30 16 5 O -0.54 -6.57 10.84 -53.50 -0.58 -7.15 16 6 C -0.17 -1.65 3.28 -27.88 -0.09 -1.74 16 7 C 0.52 7.02 7.26 -10.99 -0.08 6.94 16 8 O -0.53 -8.84 12.37 -12.70 -0.16 -8.99 16 9 N -0.61 -8.22 2.98 -173.01 -0.52 -8.74 16 10 C 0.11 1.32 6.31 -3.94 -0.02 1.29 16 11 C -0.15 -2.45 5.64 -26.83 -0.15 -2.60 16 12 C 0.18 3.36 2.73 -67.89 -0.19 3.18 16 13 N -0.72 -17.61 5.12 -53.39 -0.27 -17.88 16 14 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 15 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 16 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 17 N -0.93 -27.79 13.06 55.49 0.72 -27.06 16 18 Si 0.91 21.93 29.55 -169.99 -5.02 16.90 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 C -0.14 -2.28 5.55 -26.59 -0.15 -2.43 16 23 C 0.12 1.66 6.44 -3.69 -0.02 1.64 16 24 H 0.10 0.63 8.06 -52.49 -0.42 0.21 16 25 H 0.11 0.82 6.41 -52.49 -0.34 0.49 16 26 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 1.30 5.51 -51.93 -0.29 1.02 16 30 H 0.37 3.37 8.05 45.56 0.37 3.73 16 31 H 0.10 0.86 7.68 -51.93 -0.40 0.46 16 32 H 0.10 0.80 7.95 -51.93 -0.41 0.39 16 33 H 0.07 0.74 5.94 -51.92 -0.31 0.43 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 38 H 0.38 10.07 7.80 -40.82 -0.32 9.75 16 39 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.09 1.32 7.00 -51.93 -0.36 0.95 16 LS Contribution 341.85 15.07 5.15 5.15 Total: -1.00 -32.20 341.85 -7.56 -39.76 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -6.25 Total: 11.23 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -0.63 Total: -3.22 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.06 Total: -53.68 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.74 Total: -16.14 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.20 -7.56 -39.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200324843.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.709 kcal (2) G-P(sol) polarization free energy of solvation -32.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds