Wall clock time and date at job start Tue Mar 31 2020 05:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 119.99861 * 2 1 4 4 C 1.53004 * 109.47228 * 119.99971 * 3 2 1 5 5 O 1.42897 * 109.47467 * 359.97438 * 3 2 1 6 6 C 1.52997 * 109.46888 * 239.99687 * 3 2 1 7 7 C 1.50697 * 109.47082 * 55.94142 * 6 3 2 8 8 O 1.21283 * 120.00370 * 5.44760 * 7 6 3 9 9 N 1.34779 * 119.99966 * 185.44499 * 7 6 3 10 10 C 1.46926 * 120.63319 * 359.71805 * 9 7 6 11 11 C 1.53623 * 108.54434 * 126.36673 * 10 9 7 12 12 C 1.53046 * 109.24062 * 54.85905 * 11 10 9 13 13 N 1.46497 * 109.45999 * 178.48912 * 12 11 10 14 14 C 1.36941 * 120.00241 * 275.07000 * 13 12 11 15 15 H 1.07998 * 119.99369 * 359.97438 * 14 13 12 16 16 C 1.38804 * 120.00060 * 180.02562 * 14 13 12 17 17 N 1.31624 * 120.00207 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00043 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46904 * 60.00000 * 18 16 14 20 20 H 1.48500 * 109.47408 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47406 * 300.00055 * 18 16 14 22 22 C 1.53045 * 109.53568 * 298.51154 * 12 11 10 23 23 C 1.46926 * 120.62994 * 179.97438 * 9 7 6 24 24 H 1.08006 * 120.00048 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.00306 * 180.02562 * 1 2 3 26 26 H 1.07996 * 119.99972 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.46761 * 304.93540 * 4 3 2 28 28 H 1.09002 * 109.46860 * 64.93616 * 4 3 2 29 29 H 1.08991 * 109.47178 * 184.93757 * 4 3 2 30 30 H 0.96704 * 113.99953 * 300.00046 * 5 3 2 31 31 H 1.09003 * 109.47230 * 175.93625 * 6 3 2 32 32 H 1.08996 * 109.47602 * 295.94113 * 6 3 2 33 33 H 1.08998 * 109.58793 * 246.20721 * 10 9 7 34 34 H 1.09005 * 109.58311 * 6.62724 * 10 9 7 35 35 H 1.09002 * 109.63639 * 294.87060 * 11 10 9 36 36 H 1.08992 * 109.45722 * 174.74464 * 11 10 9 37 37 H 1.09003 * 109.44598 * 58.52199 * 12 11 10 38 38 H 0.97007 * 119.99968 * 95.06862 * 13 12 11 39 39 H 0.96993 * 120.00085 * 180.02562 * 17 16 14 40 40 H 1.08994 * 109.49641 * 301.41230 * 22 12 11 41 41 H 1.08996 * 109.51915 * 181.32964 * 22 12 11 42 42 H 1.08998 * 109.58758 * 353.37452 * 23 9 7 43 43 H 1.09007 * 109.58777 * 113.65317 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 1.2493 5 8 1.1349 2.3913 -0.0006 6 6 2.9431 1.3861 -1.2492 7 6 2.0889 1.2063 -2.4776 8 8 0.8831 1.1297 -2.3719 9 7 2.6648 1.1307 -3.6938 10 6 4.1237 1.2281 -3.8386 11 6 4.6190 0.0066 -4.6275 12 6 3.8604 -0.0786 -5.9540 13 7 4.3544 -1.2213 -6.7262 14 6 5.4631 -1.0846 -7.5183 15 1 5.9730 -0.1342 -7.5739 16 6 5.9308 -2.1672 -8.2504 17 7 5.3090 -3.3253 -8.1829 18 14 7.4428 -1.9805 -9.3313 19 1 8.6039 -1.5849 -8.4942 20 1 7.7343 -3.2729 -10.0022 21 1 7.1926 -0.9356 -10.3563 22 6 2.3657 -0.2574 -5.6782 23 6 1.8453 0.9550 -4.9005 24 1 -0.5400 0.9354 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 2.3276 1.2407 2.1370 28 1 3.7078 0.6106 1.2061 29 1 3.4205 2.3650 1.2946 30 1 0.5439 2.4030 -0.7659 31 1 3.4327 2.3593 -1.2864 32 1 3.6980 0.6007 -1.2136 33 1 4.3773 2.1415 -4.3766 34 1 4.5886 1.2413 -2.8528 35 1 4.4421 -0.8998 -4.0484 36 1 5.6860 0.1099 -4.8246 37 1 4.0177 0.8386 -6.5216 38 1 3.8961 -2.0749 -6.6765 39 1 5.6360 -4.0819 -8.6942 40 1 2.2100 -1.1612 -5.0892 41 1 1.8285 -0.3417 -6.6228 42 1 0.8066 0.7879 -4.6157 43 1 1.9145 1.8475 -5.5225 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200324844.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:59 Heat of formation + Delta-G solvation = -57.721536 kcal Electronic energy + Delta-G solvation = -22995.435045 eV Core-core repulsion = 19655.264842 eV Total energy + Delta-G solvation = -3340.170203 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.51382 -38.48517 -36.92957 -34.53714 -33.06290 -32.26068 -31.40235 -30.75524 -29.36609 -28.10068 -24.85202 -23.13433 -22.90773 -22.16738 -20.44497 -19.64659 -18.87531 -17.39196 -17.10156 -16.68941 -16.17883 -15.59815 -14.89055 -14.88714 -14.43387 -13.84278 -13.80227 -13.59075 -13.43570 -13.28920 -12.69879 -12.59683 -12.48913 -12.22535 -12.09371 -11.98640 -11.70097 -11.60403 -11.12400 -10.97689 -10.90621 -10.85852 -10.53081 -10.30313 -10.18327 -9.91467 -9.83610 -9.70368 -9.16624 -8.95292 -8.52407 -7.03011 -5.81951 -3.11646 2.34920 2.62500 3.04351 3.39570 3.44284 3.45451 4.15680 4.40524 4.53452 4.61002 4.67997 4.98374 5.15422 5.21738 5.27561 5.30164 5.33657 5.36283 5.41761 5.49145 5.56795 5.62353 5.66427 5.68270 5.89466 5.92873 5.96305 6.00214 6.17842 6.31230 6.34035 6.45941 6.56578 6.61512 6.80218 6.84025 6.98159 7.44016 7.63230 7.65573 8.18759 8.36231 9.47348 10.04539 10.39122 11.40488 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.032738 B = 0.003445 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.063715 B = 8125.337154 C = 8297.369628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.191 4.191 3 C 0.178 3.822 4 C -0.135 4.135 5 O -0.563 6.563 6 C -0.168 4.168 7 C 0.517 3.483 8 O -0.548 6.548 9 N -0.604 5.604 10 C 0.105 3.895 11 C -0.151 4.151 12 C 0.179 3.821 13 N -0.724 5.724 14 C -0.242 4.242 15 H 0.070 0.930 16 C -0.012 4.012 17 N -0.932 5.932 18 Si 0.907 3.093 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.138 4.138 23 C 0.116 3.884 24 H 0.101 0.899 25 H 0.092 0.908 26 H 0.108 0.892 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.386 0.614 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.048 0.952 38 H 0.384 0.616 39 H 0.256 0.744 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.460 10.058 15.665 19.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.210 4.210 3 C 0.137 3.863 4 C -0.192 4.192 5 O -0.374 6.374 6 C -0.208 4.208 7 C 0.305 3.695 8 O -0.428 6.428 9 N -0.336 5.336 10 C -0.018 4.018 11 C -0.192 4.192 12 C 0.069 3.931 13 N -0.365 5.365 14 C -0.374 4.374 15 H 0.088 0.912 16 C -0.208 4.208 17 N -0.580 5.580 18 Si 0.738 3.262 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.212 1.212 22 C -0.177 4.177 23 C -0.007 4.007 24 H 0.119 0.881 25 H 0.111 0.889 26 H 0.126 0.874 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.239 0.761 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.066 0.934 38 H 0.217 0.783 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.107 0.893 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.639 10.187 16.118 19.884 hybrid contribution 0.690 -0.596 -1.321 1.605 sum -4.949 9.592 14.797 18.315 Atomic orbital electron populations 1.23616 0.95955 1.01609 0.97555 1.23259 0.96872 0.97868 1.02971 1.19799 0.88075 0.85253 0.93177 1.21710 0.98744 1.02600 0.96129 1.86406 1.51041 1.48785 1.51147 1.22478 0.99916 1.05006 0.93370 1.20543 0.88612 0.75855 0.84449 1.90592 1.14825 1.51449 1.85925 1.48194 1.07973 1.71102 1.06357 1.21992 0.78914 0.99866 1.01053 1.22755 1.01684 0.96047 0.98711 1.20162 0.90084 0.92457 0.90443 1.42433 1.32892 1.09191 1.51939 1.19186 1.03391 0.96159 1.18617 0.91214 1.24750 0.99499 0.95797 1.00765 1.69651 1.41785 1.01157 1.45441 0.86279 0.82841 0.76665 0.80447 1.21256 1.21687 1.21236 1.22188 0.98053 0.97424 1.00062 1.21603 0.95752 0.98291 0.85046 0.88104 0.88950 0.87377 0.91587 0.90988 0.91630 0.76099 0.87979 0.87966 0.91335 0.90446 0.92203 0.90632 0.93440 0.78263 0.93402 0.91915 0.90592 0.89349 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 12.63 29.01 0.37 -1.40 16 2 C -0.19 -2.20 7.43 -36.03 -0.27 -2.47 16 3 C 0.18 1.92 1.08 -91.77 -0.10 1.82 16 4 C -0.13 -1.16 8.83 37.16 0.33 -0.84 16 5 O -0.56 -6.96 11.93 -52.36 -0.62 -7.59 16 6 C -0.17 -1.70 3.40 -27.89 -0.09 -1.80 16 7 C 0.52 6.70 7.18 -10.99 -0.08 6.62 16 8 O -0.55 -8.17 11.37 -11.57 -0.13 -8.30 16 9 N -0.60 -7.88 2.97 -172.53 -0.51 -8.39 16 10 C 0.11 1.27 6.37 -3.49 -0.02 1.25 16 11 C -0.15 -2.40 5.67 -26.38 -0.15 -2.55 16 12 C 0.18 3.32 2.73 -67.89 -0.19 3.13 16 13 N -0.72 -17.48 5.12 -53.38 -0.27 -17.75 16 14 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 15 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 16 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 17 N -0.93 -27.68 13.06 55.49 0.72 -26.96 16 18 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 C -0.14 -2.23 5.55 -26.63 -0.15 -2.37 16 23 C 0.12 1.59 6.43 -3.73 -0.02 1.57 16 24 H 0.10 1.20 6.41 -52.48 -0.34 0.87 16 25 H 0.09 0.99 8.06 -52.49 -0.42 0.57 16 26 H 0.11 1.17 8.06 -52.49 -0.42 0.74 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.39 4.82 5.78 45.56 0.26 5.08 16 31 H 0.10 0.90 8.11 -51.93 -0.42 0.48 16 32 H 0.10 0.91 7.42 -51.93 -0.39 0.53 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.75 5.89 -51.93 -0.31 0.45 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 38 H 0.38 10.00 7.80 -40.82 -0.32 9.68 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.09 1.25 7.01 -51.93 -0.36 0.89 16 43 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 LS Contribution 340.07 15.07 5.12 5.12 Total: -1.00 -30.52 340.07 -7.82 -38.34 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -6.48 Total: 12.81 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -0.62 Total: -4.12 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.06 Total: -53.10 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.76 Total: -15.89 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.52 -7.82 -38.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200324844.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.377 kcal (2) G-P(sol) polarization free energy of solvation -30.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds