Wall clock time and date at job start Tue Mar 31 2020 05:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 119.99844 * 2 1 4 4 C 1.52993 * 109.47500 * 120.00160 * 3 2 1 5 5 O 1.42901 * 109.47315 * 359.97438 * 3 2 1 6 6 C 1.53002 * 109.46882 * 240.00091 * 3 2 1 7 7 C 1.50694 * 109.47435 * 60.10542 * 6 3 2 8 8 O 1.21288 * 120.00063 * 354.40965 * 7 6 3 9 9 N 1.34777 * 120.00301 * 174.40832 * 7 6 3 10 10 C 1.46922 * 120.62978 * 0.02562 * 9 7 6 11 11 C 1.53191 * 108.77858 * 126.38935 * 10 9 7 12 12 C 1.53040 * 109.31053 * 54.63421 * 11 10 9 13 13 C 1.53039 * 109.53983 * 298.64067 * 12 11 10 14 14 H 1.09004 * 109.49275 * 301.37547 * 13 12 11 15 15 N 1.46499 * 109.49952 * 181.31931 * 13 12 11 16 16 C 1.36935 * 120.00263 * 85.05562 * 15 13 12 17 17 H 1.08000 * 120.00054 * 359.73307 * 16 15 13 18 18 C 1.38818 * 119.99979 * 179.97438 * 16 15 13 19 19 N 1.31616 * 119.99750 * 359.73102 * 18 16 15 20 20 Si 1.86792 * 119.99997 * 179.72864 * 18 16 15 21 21 H 1.48494 * 109.47223 * 60.00204 * 20 18 16 22 22 H 1.48505 * 109.47180 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47147 * 300.00312 * 20 18 16 24 24 C 1.46933 * 120.60838 * 179.97438 * 9 7 6 25 25 H 1.08006 * 120.00212 * 180.02562 * 1 2 3 26 26 H 1.08003 * 120.00380 * 359.97438 * 1 2 3 27 27 H 1.08001 * 119.99921 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47626 * 184.93642 * 4 3 2 29 29 H 1.09004 * 109.46691 * 304.93265 * 4 3 2 30 30 H 1.09002 * 109.47483 * 64.93123 * 4 3 2 31 31 H 0.96700 * 113.99893 * 300.00533 * 5 3 2 32 32 H 1.08998 * 109.47076 * 300.10401 * 6 3 2 33 33 H 1.09003 * 109.46848 * 180.10844 * 6 3 2 34 34 H 1.09005 * 109.58761 * 6.59862 * 10 9 7 35 35 H 1.09002 * 109.70393 * 246.24801 * 10 9 7 36 36 H 1.08999 * 109.50026 * 294.68693 * 11 10 9 37 37 H 1.08994 * 109.52715 * 174.60034 * 11 10 9 38 38 H 1.09000 * 109.46196 * 178.61738 * 12 11 10 39 39 H 1.09004 * 109.44854 * 58.65166 * 12 11 10 40 40 H 0.97005 * 119.99836 * 265.06399 * 15 13 12 41 41 H 0.97002 * 120.00154 * 179.97438 * 19 18 16 42 42 H 1.08996 * 109.56300 * 113.80513 * 24 9 7 43 43 H 1.09004 * 109.61021 * 353.37906 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9431 1.3863 1.2491 5 8 1.1348 2.3913 -0.0006 6 6 2.9430 1.3861 -1.2493 7 6 2.0765 1.3089 -2.4797 8 8 0.8869 1.0982 -2.3715 9 7 2.6232 1.4739 -3.7005 10 6 4.0625 1.7292 -3.8478 11 6 4.6491 0.6999 -4.8191 12 6 3.8658 0.7404 -6.1332 13 6 2.4031 0.3763 -5.8687 14 1 2.3504 -0.6168 -5.4224 15 7 1.6610 0.3847 -7.1318 16 6 1.6552 -0.7280 -7.9299 17 1 2.2014 -1.6103 -7.6304 18 6 0.9516 -0.7203 -9.1265 19 7 0.2856 0.3547 -9.4913 20 14 0.9500 -2.2355 -10.2189 21 1 0.3754 -3.3833 -9.4724 22 1 0.1313 -1.9721 -11.4296 23 1 2.3425 -2.5554 -10.6236 24 6 1.7908 1.4007 -4.9091 25 1 -0.5401 -0.9353 0.0004 26 1 -0.5401 0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 3.4205 2.3651 1.2945 29 1 2.3276 1.2408 2.1369 30 1 3.7078 0.6107 1.2061 31 1 0.5438 2.4030 -0.7658 32 1 3.6501 0.5566 -1.2502 33 1 3.4895 2.3293 -1.2483 34 1 4.5513 1.6364 -2.8779 35 1 4.2192 2.7336 -4.2412 36 1 4.5753 -0.2959 -4.3822 37 1 5.6955 0.9360 -5.0119 38 1 4.2966 0.0262 -6.8349 39 1 3.9194 1.7433 -6.5570 40 1 1.1737 1.1785 -7.4028 41 1 -0.2058 0.3604 -10.3276 42 1 1.7591 2.3782 -5.3902 43 1 0.7810 1.0908 -4.6397 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207950933.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:28 Heat of formation + Delta-G solvation = -56.334056 kcal Electronic energy + Delta-G solvation = -23116.668279 eV Core-core repulsion = 19776.558241 eV Total energy + Delta-G solvation = -3340.110038 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.46805 -38.47041 -36.84476 -34.54576 -33.00736 -32.31863 -31.39649 -31.11975 -29.03417 -27.69557 -25.03858 -23.82271 -22.44142 -22.08096 -20.28513 -19.59870 -18.86787 -17.33021 -17.21846 -16.64908 -16.08028 -15.67660 -14.79560 -14.65577 -14.32886 -14.09586 -13.96111 -13.59314 -13.28179 -12.96931 -12.89798 -12.68254 -12.55792 -12.26335 -12.24395 -12.00112 -11.73468 -11.16586 -11.03918 -10.96149 -10.91523 -10.69728 -10.45471 -10.38482 -10.18091 -10.11339 -9.84324 -9.67444 -9.05554 -8.93222 -8.43014 -7.01574 -5.79847 -3.09674 2.41822 2.68862 3.07477 3.42297 3.46925 3.47799 4.16829 4.42680 4.56083 4.61333 4.70749 4.89492 5.09752 5.15442 5.25269 5.28126 5.31855 5.38818 5.48981 5.53461 5.61324 5.64702 5.70175 5.73067 5.78340 5.93799 6.00167 6.05034 6.12323 6.20998 6.35368 6.51259 6.65672 6.67743 6.84374 6.86835 7.01097 7.50926 7.66225 7.68061 8.26062 8.38188 9.49173 10.04283 10.39338 11.42559 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025364 B = 0.003883 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.652383 B = 7208.773197 C = 7725.359237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.192 4.192 3 C 0.178 3.822 4 C -0.134 4.134 5 O -0.563 6.563 6 C -0.166 4.166 7 C 0.513 3.487 8 O -0.540 6.540 9 N -0.603 5.603 10 C 0.107 3.893 11 C -0.133 4.133 12 C -0.138 4.138 13 C 0.169 3.831 14 H 0.049 0.951 15 N -0.721 5.721 16 C -0.241 4.241 17 H 0.070 0.930 18 C -0.011 4.011 19 N -0.932 5.932 20 Si 0.908 3.092 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.286 1.286 24 C 0.106 3.894 25 H 0.093 0.907 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.387 0.613 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.384 0.616 41 H 0.256 0.744 42 H 0.064 0.936 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.210 3.334 18.922 21.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.210 4.210 3 C 0.136 3.864 4 C -0.191 4.191 5 O -0.374 6.374 6 C -0.206 4.206 7 C 0.301 3.699 8 O -0.418 6.418 9 N -0.336 5.336 10 C -0.017 4.017 11 C -0.172 4.172 12 C -0.178 4.178 13 C 0.058 3.942 14 H 0.067 0.933 15 N -0.362 5.362 16 C -0.372 4.372 17 H 0.088 0.912 18 C -0.207 4.207 19 N -0.580 5.580 20 Si 0.739 3.261 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.213 1.213 24 C -0.017 4.017 25 H 0.111 0.889 26 H 0.119 0.881 27 H 0.125 0.875 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.239 0.761 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.218 0.782 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.860 3.201 19.410 21.575 hybrid contribution -0.228 -0.803 -1.577 1.784 sum 8.632 2.399 17.833 19.956 Atomic orbital electron populations 1.23620 0.95980 1.01680 0.97154 1.23194 0.96834 0.97661 1.03333 1.19802 0.88120 0.85368 0.93087 1.21699 0.98706 1.02465 0.96206 1.86405 1.51026 1.48785 1.51148 1.22464 0.99794 1.04858 0.93487 1.20554 0.88669 0.76225 0.84403 1.90662 1.15911 1.49187 1.86055 1.48151 1.09000 1.70229 1.06226 1.21779 0.80296 0.99404 1.00172 1.21934 0.99355 0.98946 0.96996 1.22290 0.98168 1.01998 0.95384 1.20454 0.90156 0.96222 0.87383 0.93335 1.42301 1.59111 1.15906 1.18886 1.19155 1.25870 0.92527 0.99652 0.91246 1.24745 1.00144 0.97514 0.98312 1.69648 1.36539 1.27733 1.24047 0.86262 0.77371 0.82421 0.80086 1.21216 1.21638 1.21262 1.21991 0.95694 0.99978 0.84027 0.88901 0.88122 0.87468 0.91685 0.91574 0.91091 0.76088 0.88023 0.88299 0.90308 0.91303 0.91908 0.91313 0.91569 0.92470 0.78192 0.93375 0.91763 0.88849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 12.60 29.02 0.37 -1.49 16 2 C -0.19 -2.27 7.47 -36.03 -0.27 -2.54 16 3 C 0.18 1.94 1.08 -91.77 -0.10 1.84 16 4 C -0.13 -1.12 8.83 37.15 0.33 -0.79 16 5 O -0.56 -7.30 11.92 -51.79 -0.62 -7.92 16 6 C -0.17 -1.67 3.33 -27.88 -0.09 -1.76 16 7 C 0.51 7.12 7.18 -10.99 -0.08 7.04 16 8 O -0.54 -9.03 11.37 -11.01 -0.13 -9.16 16 9 N -0.60 -8.42 2.97 -172.80 -0.51 -8.93 16 10 C 0.11 1.15 6.30 -3.71 -0.02 1.13 16 11 C -0.13 -1.62 6.08 -26.61 -0.16 -1.78 16 12 C -0.14 -2.30 5.47 -26.69 -0.15 -2.44 16 13 C 0.17 3.31 2.92 -67.84 -0.20 3.12 16 14 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 15 N -0.72 -17.89 5.12 -53.34 -0.27 -18.16 16 16 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 17 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 18 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 19 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 20 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 24 C 0.11 1.84 5.90 -3.74 -0.02 1.81 16 25 H 0.09 1.08 8.06 -52.48 -0.42 0.66 16 26 H 0.10 1.31 6.41 -52.48 -0.34 0.97 16 27 H 0.11 1.15 8.06 -52.49 -0.42 0.72 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.39 5.22 5.78 45.56 0.26 5.49 16 32 H 0.10 0.84 7.94 -51.93 -0.41 0.42 16 33 H 0.10 0.84 7.66 -51.93 -0.40 0.44 16 34 H 0.08 0.63 5.95 -51.93 -0.31 0.32 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.38 10.11 7.80 -40.82 -0.32 9.79 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.09 1.83 7.01 -51.93 -0.36 1.47 16 LS Contribution 340.07 15.07 5.12 5.12 Total: -1.00 -31.39 340.07 -7.84 -39.23 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -6.49 Total: 12.85 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -0.64 Total: -3.07 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.06 Total: -54.36 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.74 Total: -17.07 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.39 -7.84 -39.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207950933.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.106 kcal (2) G-P(sol) polarization free energy of solvation -31.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds