Wall clock time and date at job start Tue Mar 31 2020 05:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 120.00207 * 2 1 4 4 C 1.53001 * 109.46746 * 240.00003 * 3 2 1 5 5 O 1.42899 * 109.46914 * 359.97438 * 3 2 1 6 6 C 1.52996 * 109.47142 * 120.00016 * 3 2 1 7 7 C 1.50700 * 109.46769 * 180.02562 * 6 3 2 8 8 O 1.21286 * 120.00487 * 359.97438 * 7 6 3 9 9 N 1.34774 * 120.00068 * 180.02562 * 7 6 3 10 10 C 1.46926 * 120.62872 * 359.97438 * 9 7 6 11 11 C 1.53193 * 108.78055 * 233.63202 * 10 9 7 12 12 C 1.53043 * 109.31056 * 305.36711 * 11 10 9 13 13 C 1.53046 * 109.53904 * 61.36442 * 12 11 10 14 14 H 1.08997 * 109.49803 * 58.61194 * 13 12 11 15 15 N 1.46493 * 109.49685 * 178.68429 * 13 12 11 16 16 C 1.36945 * 119.99892 * 274.99466 * 15 13 12 17 17 H 1.08000 * 119.99422 * 359.72792 * 16 15 13 18 18 C 1.38811 * 120.00031 * 179.72716 * 16 15 13 19 19 N 1.31614 * 119.99700 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00072 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47294 * 90.00155 * 20 18 16 22 22 H 1.48499 * 109.47218 * 210.00015 * 20 18 16 23 23 H 1.48505 * 109.47256 * 330.00020 * 20 18 16 24 24 C 1.46928 * 120.63587 * 180.02562 * 9 7 6 25 25 H 1.08000 * 120.00061 * 0.02562 * 1 2 3 26 26 H 1.08004 * 119.99989 * 180.02562 * 1 2 3 27 27 H 1.08000 * 119.99550 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.47361 * 299.99477 * 4 3 2 29 29 H 1.09003 * 109.47203 * 60.00044 * 4 3 2 30 30 H 1.09008 * 109.46943 * 179.97438 * 4 3 2 31 31 H 0.96688 * 114.00368 * 59.99994 * 5 3 2 32 32 H 1.08994 * 109.47431 * 60.00238 * 6 3 2 33 33 H 1.09002 * 109.46833 * 299.99311 * 6 3 2 34 34 H 1.08999 * 109.58469 * 113.84633 * 10 9 7 35 35 H 1.09000 * 109.70790 * 353.49244 * 10 9 7 36 36 H 1.08990 * 109.49931 * 185.41682 * 11 10 9 37 37 H 1.08996 * 109.49272 * 65.31285 * 11 10 9 38 38 H 1.08998 * 109.46455 * 301.34264 * 12 11 10 39 39 H 1.09000 * 109.46098 * 181.37996 * 12 11 10 40 40 H 0.97000 * 120.00738 * 94.72931 * 15 13 12 41 41 H 0.97004 * 120.00256 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.58302 * 6.57226 * 24 9 7 43 43 H 1.09005 * 109.58533 * 246.15884 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9432 1.3860 -1.2493 5 8 1.1350 2.3912 -0.0006 6 6 2.9432 1.3861 1.2492 7 6 3.6962 2.6915 1.2494 8 8 3.5447 3.4792 0.3398 9 7 4.5389 2.9831 2.2600 10 6 4.7334 2.0388 3.3686 11 6 4.4805 2.7710 4.6903 12 6 5.3716 4.0133 4.7592 13 6 5.0209 4.9592 3.6082 14 1 3.9694 5.2383 3.6742 15 7 5.8526 6.1621 3.6932 16 6 5.4682 7.2052 4.4930 17 1 4.5496 7.1426 5.0576 18 6 6.2591 8.3428 4.5780 19 7 5.8893 9.3454 5.3463 20 14 7.8474 8.4512 3.6009 21 1 7.5696 9.0459 2.2689 22 1 8.8202 9.3036 4.3305 23 1 8.4153 7.0901 3.4266 24 6 5.2797 4.2519 2.2746 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8499 -0.9354 0.0004 28 1 3.6515 0.5576 -1.2492 29 1 2.3165 1.3283 -2.1393 30 1 3.4879 2.3302 -1.2495 31 1 0.5434 2.4034 0.7641 32 1 3.6515 0.5577 1.2492 33 1 2.3164 1.3285 2.1392 34 1 5.7552 1.6598 3.3507 35 1 4.0340 1.2085 3.2713 36 1 4.7146 2.1087 5.5237 37 1 3.4339 3.0704 4.7457 38 1 6.4169 3.7154 4.6787 39 1 5.2114 4.5229 5.7094 40 1 6.6776 6.2184 3.1861 41 1 6.4422 10.1402 5.4061 42 1 4.9389 4.8834 1.4540 43 1 6.3461 4.0536 2.1672 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207950934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:31 Heat of formation + Delta-G solvation = -47.798182 kcal Electronic energy + Delta-G solvation = -23024.359051 eV Core-core repulsion = 19684.619156 eV Total energy + Delta-G solvation = -3339.739894 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.41214 -38.57399 -37.05098 -34.64648 -33.18778 -32.25601 -31.63794 -31.22853 -29.24362 -27.85276 -25.08193 -23.76345 -22.66435 -21.95842 -20.18271 -19.85149 -18.92400 -17.64787 -17.33401 -16.80714 -15.93792 -15.59047 -15.02694 -14.84844 -14.54910 -14.07488 -13.95947 -13.67429 -13.50931 -13.10251 -12.79316 -12.74736 -12.48307 -12.41191 -12.28714 -11.80867 -11.62994 -11.42960 -11.22873 -11.09050 -11.00514 -10.70021 -10.50978 -10.42116 -10.29089 -10.09120 -9.72198 -9.60801 -9.41523 -8.94045 -8.43211 -7.30022 -5.78077 -3.14643 1.90317 2.74279 3.06012 3.37689 3.41249 3.45951 4.07499 4.36436 4.51372 4.58537 4.76285 4.77058 4.90253 4.95026 5.08171 5.22752 5.24656 5.38178 5.44636 5.47108 5.51617 5.52699 5.66018 5.70825 5.73368 5.88555 5.92228 6.03836 6.09375 6.19543 6.28507 6.31699 6.42366 6.46479 6.62745 6.79016 6.94013 7.54133 7.56944 7.96924 8.33945 8.40422 9.18049 9.90490 10.09331 11.40081 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027663 B = 0.003820 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.941165 B = 7329.004602 C = 7636.439283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.187 4.187 3 C 0.176 3.824 4 C -0.147 4.147 5 O -0.536 6.536 6 C -0.163 4.163 7 C 0.513 3.487 8 O -0.518 6.518 9 N -0.609 5.609 10 C 0.107 3.893 11 C -0.133 4.133 12 C -0.138 4.138 13 C 0.173 3.827 14 H 0.058 0.942 15 N -0.745 5.745 16 C -0.244 4.244 17 H 0.090 0.910 18 C 0.006 3.994 19 N -0.933 5.933 20 Si 0.884 3.116 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.277 1.277 24 C 0.104 3.896 25 H 0.105 0.895 26 H 0.099 0.901 27 H 0.115 0.885 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.369 0.631 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.361 0.639 41 H 0.260 0.740 42 H 0.094 0.906 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.378 -23.445 -7.117 25.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.205 4.205 3 C 0.135 3.865 4 C -0.204 4.204 5 O -0.341 6.341 6 C -0.204 4.204 7 C 0.300 3.700 8 O -0.394 6.394 9 N -0.343 5.343 10 C -0.016 4.016 11 C -0.172 4.172 12 C -0.178 4.178 13 C 0.063 3.937 14 H 0.076 0.924 15 N -0.388 5.388 16 C -0.373 4.373 17 H 0.108 0.892 18 C -0.190 4.190 19 N -0.581 5.581 20 Si 0.715 3.285 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.019 4.019 25 H 0.124 0.876 26 H 0.117 0.883 27 H 0.133 0.867 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.215 0.785 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.194 0.806 41 H 0.070 0.930 42 H 0.112 0.888 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.272 -22.688 -8.028 24.870 hybrid contribution 0.959 -0.169 0.221 0.999 sum -5.312 -22.857 -7.808 24.731 Atomic orbital electron populations 1.23881 0.96058 1.02410 0.99477 1.23625 0.96758 0.98788 1.01326 1.19859 0.88061 0.84028 0.94588 1.21939 0.98853 1.04345 0.95291 1.86743 1.49989 1.48821 1.48574 1.22410 1.00344 0.97120 1.00491 1.20362 0.79317 0.88358 0.81930 1.90688 1.63749 1.49898 1.35041 1.48117 1.44041 1.19672 1.22475 1.21760 1.01549 0.91585 0.86687 1.21929 1.01161 0.98149 0.95992 1.22250 0.98554 0.95111 1.01914 1.20440 0.95888 0.86451 0.90947 0.92358 1.42675 1.25099 1.15501 1.55502 1.19033 1.06473 0.92726 1.19103 0.89193 1.24663 0.98569 0.96260 0.99497 1.69698 1.39320 1.06801 1.42235 0.86553 0.84514 0.77282 0.80185 1.20946 1.21741 1.20332 1.21962 0.95265 0.84252 1.00435 0.87640 0.88284 0.86732 0.92023 0.92265 0.88627 0.78457 0.88259 0.88747 0.91492 0.90342 0.91247 0.91711 0.92619 0.91111 0.80606 0.93010 0.88787 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 13.93 29.01 0.40 -0.93 16 2 C -0.19 -1.47 8.77 -36.03 -0.32 -1.79 16 3 C 0.18 1.80 0.94 -91.77 -0.09 1.72 16 4 C -0.15 -1.66 8.50 37.16 0.32 -1.35 16 5 O -0.54 -6.59 10.84 -53.50 -0.58 -7.17 16 6 C -0.16 -1.53 3.28 -27.88 -0.09 -1.63 16 7 C 0.51 7.11 7.26 -10.99 -0.08 7.03 16 8 O -0.52 -9.26 12.37 -12.71 -0.16 -9.42 16 9 N -0.61 -8.28 2.97 -172.79 -0.51 -8.80 16 10 C 0.11 1.10 6.34 -3.71 -0.02 1.08 16 11 C -0.13 -1.57 6.08 -26.61 -0.16 -1.74 16 12 C -0.14 -2.24 5.47 -26.69 -0.15 -2.38 16 13 C 0.17 3.31 2.92 -67.83 -0.20 3.11 16 14 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 15 N -0.75 -17.55 4.93 -53.33 -0.26 -17.82 16 16 C -0.24 -6.85 10.41 -15.06 -0.16 -7.01 16 17 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 18 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 19 N -0.93 -29.36 13.97 55.49 0.78 -28.59 16 20 Si 0.88 22.18 27.74 -169.99 -4.71 17.47 16 21 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 23 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 24 C 0.10 1.74 5.90 -3.73 -0.02 1.72 16 25 H 0.11 0.79 6.41 -52.49 -0.34 0.46 16 26 H 0.10 0.58 8.06 -52.48 -0.42 0.16 16 27 H 0.11 0.72 8.06 -52.49 -0.42 0.30 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.10 1.37 5.51 -51.92 -0.29 1.09 16 31 H 0.37 3.29 8.05 45.56 0.37 3.66 16 32 H 0.10 0.71 7.94 -51.93 -0.41 0.30 16 33 H 0.09 0.73 7.70 -51.93 -0.40 0.33 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.58 5.95 -51.93 -0.31 0.27 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.36 8.36 5.66 -40.82 -0.23 8.13 16 41 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 42 H 0.09 1.79 7.01 -51.93 -0.36 1.42 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 338.78 15.07 5.11 5.11 Total: -1.00 -34.14 338.78 -7.22 -41.36 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -6.21 Total: 9.94 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -0.66 Total: -2.08 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.00 Total: -55.20 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.74 Total: -16.59 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.47 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.14 -7.22 -41.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207950934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.442 kcal (2) G-P(sol) polarization free energy of solvation -34.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds