Wall clock time and date at job start Tue Mar 31 2020 05:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 120.00180 * 2 1 4 4 C 1.52995 * 109.47186 * 240.00393 * 3 2 1 5 5 O 1.42904 * 109.46948 * 0.02562 * 3 2 1 6 6 C 1.52995 * 109.47210 * 119.99684 * 3 2 1 7 7 C 1.50704 * 109.47210 * 180.02562 * 6 3 2 8 8 O 1.21285 * 119.99847 * 359.97438 * 7 6 3 9 9 N 1.34771 * 120.00168 * 180.02562 * 7 6 3 10 10 C 1.46931 * 120.63030 * 359.97438 * 9 7 6 11 11 C 1.53200 * 108.77279 * 126.37310 * 10 9 7 12 12 C 1.53039 * 109.31160 * 54.63574 * 11 10 9 13 13 C 1.53046 * 109.52798 * 298.64112 * 12 11 10 14 14 H 1.08994 * 109.49581 * 301.40708 * 13 12 11 15 15 N 1.46501 * 109.49630 * 181.31171 * 13 12 11 16 16 C 1.36937 * 120.00201 * 85.00078 * 15 13 12 17 17 H 1.07998 * 119.99752 * 359.97438 * 16 15 13 18 18 C 1.38806 * 119.99989 * 179.97438 * 16 15 13 19 19 N 1.31613 * 120.00206 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99751 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46847 * 90.00596 * 20 18 16 22 22 H 1.48498 * 109.47050 * 209.99618 * 20 18 16 23 23 H 1.48491 * 109.47203 * 330.00227 * 20 18 16 24 24 C 1.46928 * 120.63178 * 179.97438 * 9 7 6 25 25 H 1.08000 * 119.99910 * 180.02562 * 1 2 3 26 26 H 1.07998 * 120.00031 * 359.97438 * 1 2 3 27 27 H 1.07999 * 119.99666 * 179.97438 * 2 1 3 28 28 H 1.09007 * 109.46633 * 299.99675 * 4 3 2 29 29 H 1.09000 * 109.47282 * 59.99581 * 4 3 2 30 30 H 1.08996 * 109.47239 * 180.02562 * 4 3 2 31 31 H 0.96693 * 114.00168 * 59.99747 * 5 3 2 32 32 H 1.09002 * 109.46999 * 60.00554 * 6 3 2 33 33 H 1.08996 * 109.47783 * 300.00592 * 6 3 2 34 34 H 1.08998 * 109.58425 * 6.59260 * 10 9 7 35 35 H 1.08995 * 109.70793 * 246.22878 * 10 9 7 36 36 H 1.08997 * 109.49280 * 294.68615 * 11 10 9 37 37 H 1.08996 * 109.52417 * 174.60413 * 11 10 9 38 38 H 1.09002 * 109.46050 * 58.65698 * 12 11 10 39 39 H 1.09004 * 109.46034 * 178.62914 * 12 11 10 40 40 H 0.96996 * 119.99546 * 264.99835 * 15 13 12 41 41 H 0.97004 * 120.00373 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.58766 * 353.41859 * 24 9 7 43 43 H 1.09002 * 109.58364 * 113.69954 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9431 1.3862 -1.2492 5 8 1.1349 2.3913 0.0006 6 6 2.9431 1.3862 1.2492 7 6 3.6962 2.6916 1.2495 8 8 3.5447 3.4793 0.3398 9 7 4.5388 2.9832 2.2601 10 6 4.7333 2.0389 3.3689 11 6 6.2319 1.7601 3.5219 12 6 6.9790 3.0855 3.6868 13 6 6.7727 3.9476 2.4392 14 1 7.1341 3.4108 1.5622 15 7 7.5137 5.2031 2.5845 16 6 8.8387 5.2595 2.2436 17 1 9.3376 4.3784 1.8680 18 6 9.5406 6.4492 2.3807 19 7 8.9327 7.5228 2.8389 20 14 11.3484 6.5259 1.9163 21 1 11.4763 6.9042 0.4860 22 1 12.0334 7.5385 2.7592 23 1 11.9724 5.1962 2.1344 24 6 5.2804 4.2515 2.2742 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8499 -0.9353 0.0004 28 1 3.6514 0.5576 -1.2492 29 1 2.3164 1.3284 -2.1392 30 1 3.4884 2.3299 -1.2490 31 1 0.5439 2.4030 0.7658 32 1 3.6515 0.5577 1.2492 33 1 2.3165 1.3284 2.1392 34 1 4.2088 1.1082 3.1524 35 1 4.3458 2.4706 4.2916 36 1 6.5983 1.2438 2.6346 37 1 6.3986 1.1367 4.4004 38 1 6.5949 3.6127 4.5601 39 1 8.0428 2.8886 3.8203 40 1 7.0656 5.9943 2.9221 41 1 9.4233 8.3541 2.9351 42 1 5.1167 4.7809 1.3355 43 1 4.9362 4.8668 3.1055 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207950936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:34 Heat of formation + Delta-G solvation = -51.996464 kcal Electronic energy + Delta-G solvation = -22956.120485 eV Core-core repulsion = 19616.198539 eV Total energy + Delta-G solvation = -3339.921945 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.34250 -38.51155 -36.95682 -34.48496 -33.17408 -32.22795 -31.57307 -31.06104 -28.87555 -27.61116 -25.00685 -23.86003 -22.67453 -22.03856 -20.12380 -19.80624 -18.80978 -17.31310 -17.18085 -16.75352 -15.84925 -15.54645 -15.08404 -14.60898 -14.53107 -14.05672 -14.01208 -13.56442 -13.17462 -13.07164 -12.89110 -12.74401 -12.40086 -12.28691 -12.16645 -11.77176 -11.60891 -11.25806 -11.07847 -10.93865 -10.90571 -10.66253 -10.39649 -10.34831 -10.26127 -10.05296 -9.71060 -9.69855 -9.35222 -8.91079 -8.33785 -6.98608 -5.77528 -3.07155 1.92103 2.81220 3.14658 3.43711 3.48795 3.50189 4.10259 4.39958 4.55072 4.59210 4.79124 4.84932 4.95575 4.99442 5.14168 5.30171 5.30308 5.48577 5.52058 5.55185 5.58429 5.69232 5.76018 5.79308 5.82374 5.95979 6.03594 6.17183 6.21461 6.25075 6.35372 6.39405 6.48399 6.56821 6.74102 6.89037 7.05063 7.57349 7.63294 7.69213 8.39391 8.42755 9.51614 10.07164 10.42190 11.44997 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030114 B = 0.003571 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.587384 B = 7838.464376 C = 8174.514414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.185 4.185 3 C 0.176 3.824 4 C -0.148 4.148 5 O -0.537 6.537 6 C -0.163 4.163 7 C 0.512 3.488 8 O -0.519 6.519 9 N -0.608 5.608 10 C 0.108 3.892 11 C -0.133 4.133 12 C -0.137 4.137 13 C 0.169 3.831 14 H 0.049 0.951 15 N -0.721 5.721 16 C -0.239 4.239 17 H 0.070 0.930 18 C -0.012 4.012 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.107 3.893 25 H 0.099 0.901 26 H 0.105 0.895 27 H 0.115 0.885 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.367 0.633 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.384 0.616 41 H 0.256 0.744 42 H 0.092 0.908 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.433 -17.726 0.192 23.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.203 4.203 3 C 0.135 3.865 4 C -0.205 4.205 5 O -0.341 6.341 6 C -0.204 4.204 7 C 0.299 3.701 8 O -0.395 6.395 9 N -0.343 5.343 10 C -0.015 4.015 11 C -0.172 4.172 12 C -0.178 4.178 13 C 0.058 3.942 14 H 0.067 0.933 15 N -0.362 5.362 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.016 4.016 25 H 0.117 0.883 26 H 0.123 0.877 27 H 0.133 0.867 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.115 0.885 31 H 0.213 0.787 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.218 0.782 41 H 0.065 0.935 42 H 0.111 0.889 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.018 -17.152 -0.930 22.816 hybrid contribution 0.677 -0.031 0.692 0.968 sum -14.341 -17.183 -0.238 22.383 Atomic orbital electron populations 1.23861 0.96043 1.02336 0.99787 1.23643 0.96748 0.98862 1.01043 1.19875 0.87990 0.83912 0.94742 1.21948 0.98826 1.04594 0.95136 1.86749 1.50032 1.48928 1.48433 1.22409 1.00297 0.97377 1.00289 1.20340 0.79646 0.88282 0.81798 1.90688 1.64038 1.49971 1.34752 1.48152 1.43365 1.20104 1.22655 1.21740 0.97399 0.92549 0.89836 1.21936 0.94417 0.99133 1.01750 1.22283 1.00357 0.94443 1.00700 1.20472 0.89332 0.89089 0.95323 0.93291 1.42315 1.08693 1.07204 1.78026 1.19200 0.86134 0.95692 1.35978 0.91184 1.24746 0.98281 0.95811 1.01988 1.69658 1.35769 1.00727 1.51829 0.86189 0.84989 0.77112 0.77887 1.21659 1.21767 1.20775 1.21967 0.92045 0.84221 1.03348 0.88308 0.87712 0.86680 0.91908 0.92288 0.88499 0.78660 0.88152 0.88966 0.90502 0.91511 0.91901 0.91422 0.92509 0.91608 0.78197 0.93451 0.88930 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 13.93 29.01 0.40 -0.95 16 2 C -0.18 -1.51 8.77 -36.02 -0.32 -1.83 16 3 C 0.18 1.88 0.94 -91.77 -0.09 1.79 16 4 C -0.15 -1.80 8.51 37.16 0.32 -1.49 16 5 O -0.54 -6.57 10.84 -53.50 -0.58 -7.15 16 6 C -0.16 -1.61 3.28 -27.88 -0.09 -1.71 16 7 C 0.51 7.43 7.26 -10.99 -0.08 7.35 16 8 O -0.52 -9.64 12.37 -12.72 -0.16 -9.79 16 9 N -0.61 -8.74 2.97 -172.76 -0.51 -9.26 16 10 C 0.11 1.18 6.34 -3.70 -0.02 1.16 16 11 C -0.13 -1.64 6.08 -26.61 -0.16 -1.80 16 12 C -0.14 -2.31 5.47 -26.69 -0.15 -2.46 16 13 C 0.17 3.36 2.92 -67.81 -0.20 3.16 16 14 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 15 N -0.72 -18.08 5.12 -53.31 -0.27 -18.35 16 16 C -0.24 -6.63 9.93 -15.06 -0.15 -6.78 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.01 -0.35 5.50 -17.44 -0.10 -0.44 16 19 N -0.93 -28.21 13.06 55.49 0.72 -27.48 16 20 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.11 1.91 5.90 -3.71 -0.02 1.89 16 25 H 0.10 0.59 8.06 -52.49 -0.42 0.16 16 26 H 0.10 0.78 6.41 -52.49 -0.34 0.44 16 27 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 28 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.10 1.50 5.51 -51.93 -0.29 1.22 16 31 H 0.37 3.14 8.05 45.56 0.37 3.50 16 32 H 0.10 0.81 7.69 -51.93 -0.40 0.41 16 33 H 0.09 0.71 7.94 -51.93 -0.41 0.30 16 34 H 0.08 0.61 5.93 -51.93 -0.31 0.30 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.38 10.22 7.80 -40.82 -0.32 9.90 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.09 1.89 7.00 -51.93 -0.36 1.52 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 341.88 15.07 5.15 5.15 Total: -1.00 -33.17 341.88 -7.57 -40.75 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -6.25 Total: 10.80 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -0.65 Total: -2.11 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -0.06 Total: -55.09 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.74 Total: -16.94 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.17 -7.57 -40.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207950936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.250 kcal (2) G-P(sol) polarization free energy of solvation -33.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds