Wall clock time and date at job start Tue Mar 31 2020 05:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99926 * 2 1 4 4 C 1.53001 * 109.47111 * 120.00038 * 3 2 1 5 5 O 1.42903 * 109.47177 * 359.97438 * 3 2 1 6 6 C 1.53001 * 109.47059 * 240.00072 * 3 2 1 7 7 C 1.50699 * 109.47292 * 60.06031 * 6 3 2 8 8 O 1.21280 * 119.99739 * 354.59467 * 7 6 3 9 9 N 1.34775 * 120.00099 * 174.58565 * 7 6 3 10 10 C 1.46922 * 120.62922 * 0.02562 * 9 7 6 11 11 C 1.53189 * 108.77840 * 233.33079 * 10 9 7 12 12 C 1.53050 * 109.31070 * 305.36932 * 11 10 9 13 13 C 1.53032 * 109.53873 * 61.36404 * 12 11 10 14 14 H 1.08999 * 109.50012 * 58.61517 * 13 12 11 15 15 N 1.46500 * 109.50008 * 178.68442 * 13 12 11 16 16 C 1.36938 * 119.99745 * 275.00054 * 15 13 12 17 17 H 1.07997 * 120.00237 * 359.97438 * 16 15 13 18 18 C 1.38818 * 119.99869 * 179.97438 * 16 15 13 19 19 N 1.31614 * 119.99774 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99766 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47180 * 89.99580 * 20 18 16 22 22 H 1.48501 * 109.46919 * 209.99588 * 20 18 16 23 23 H 1.48497 * 109.47283 * 329.99472 * 20 18 16 24 24 C 1.46927 * 120.62873 * 179.72289 * 9 7 6 25 25 H 1.07994 * 120.00326 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.99621 * 180.02562 * 1 2 3 27 27 H 1.08004 * 120.00125 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.46600 * 184.92891 * 4 3 2 29 29 H 1.08999 * 109.47009 * 304.92733 * 4 3 2 30 30 H 1.08998 * 109.47178 * 64.92562 * 4 3 2 31 31 H 0.96700 * 114.00098 * 300.00481 * 5 3 2 32 32 H 1.09004 * 109.46809 * 300.06773 * 6 3 2 33 33 H 1.08997 * 109.46950 * 180.02562 * 6 3 2 34 34 H 1.09003 * 109.58850 * 353.12142 * 10 9 7 35 35 H 1.09005 * 109.58355 * 113.54608 * 10 9 7 36 36 H 1.08995 * 109.49892 * 65.31433 * 11 10 9 37 37 H 1.08997 * 109.50434 * 185.38493 * 11 10 9 38 38 H 1.09002 * 109.45656 * 181.38744 * 12 11 10 39 39 H 1.09003 * 109.45604 * 301.35051 * 12 11 10 40 40 H 0.97001 * 120.00274 * 94.98921 * 15 13 12 41 41 H 0.97009 * 119.99734 * 180.02562 * 19 18 16 42 42 H 1.09003 * 109.58475 * 246.45212 * 24 9 7 43 43 H 1.08996 * 109.58677 * 6.88254 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3861 1.2492 5 8 1.1348 2.3913 -0.0006 6 6 2.9431 1.3861 -1.2493 7 6 2.0766 1.3078 -2.4797 8 8 0.8867 1.0998 -2.3712 9 7 2.6239 1.4691 -3.7007 10 6 4.0637 1.7214 -3.8483 11 6 4.2591 2.9837 -4.6939 12 6 3.5094 2.8262 -6.0189 13 6 2.0137 2.6559 -5.7437 14 1 1.6438 3.5223 -5.1954 15 7 1.2932 2.5368 -7.0137 16 6 0.9065 3.6631 -7.6897 17 1 1.1322 4.6392 -7.2864 18 6 0.2242 3.5503 -8.8934 19 7 -0.1480 4.6328 -9.5428 20 14 -0.1669 1.8619 -9.5905 21 1 -1.4883 1.4114 -9.0845 22 1 -0.2032 1.9349 -11.0732 23 1 0.8800 0.8972 -9.1679 24 6 1.7930 1.3894 -4.9099 25 1 -0.5400 0.9352 0.0004 26 1 -0.5400 -0.9354 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 3.4206 2.3650 1.2944 29 1 2.3276 1.2408 2.1370 30 1 3.7077 0.6105 1.2062 31 1 0.5438 2.4030 -0.7658 32 1 3.6506 0.5569 -1.2498 33 1 3.4884 2.3299 -1.2490 34 1 4.5118 1.8670 -2.8653 35 1 4.5344 0.8726 -4.3446 36 1 3.8681 3.8467 -4.1551 37 1 5.3212 3.1287 -4.8913 38 1 3.6671 3.7130 -6.6329 39 1 3.8839 1.9485 -6.5459 40 1 1.0903 1.6601 -7.3758 41 1 -0.6251 4.5539 -10.3838 42 1 2.0789 0.5137 -5.4926 43 1 0.7428 1.3161 -4.6275 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207950937.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:38 Heat of formation + Delta-G solvation = -51.931349 kcal Electronic energy + Delta-G solvation = -23182.452490 eV Core-core repulsion = 19842.533368 eV Total energy + Delta-G solvation = -3339.919122 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.54109 -38.53977 -36.93341 -34.70785 -33.03402 -32.34516 -31.50733 -31.24760 -29.37392 -27.95144 -25.11081 -23.71193 -22.45868 -22.00544 -20.29559 -19.71025 -18.96570 -17.68194 -17.38762 -16.69014 -16.17107 -15.62847 -15.03118 -14.68445 -14.50979 -14.09980 -13.88468 -13.68839 -13.34270 -13.12911 -12.80666 -12.72982 -12.59373 -12.45844 -12.28258 -12.07319 -11.79283 -11.41278 -11.13049 -11.07504 -11.03453 -10.73698 -10.54560 -10.46133 -10.18754 -10.12189 -9.88240 -9.62421 -9.11396 -8.96549 -8.52724 -7.32792 -5.80254 -3.17058 2.35284 2.61515 2.98572 3.35483 3.38845 3.43902 4.14774 4.36705 4.56150 4.57119 4.65203 4.81265 5.03911 5.08624 5.18965 5.21351 5.27383 5.33539 5.36200 5.43478 5.47387 5.60307 5.61682 5.64596 5.68205 5.87660 5.91285 5.99016 5.99438 6.06555 6.26915 6.40379 6.53504 6.60805 6.75202 6.80926 6.90559 7.42390 7.66592 7.94412 8.18611 8.38087 9.15569 9.87955 10.06612 11.37835 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024527 B = 0.004134 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.338863 B = 6771.137379 C = 7292.940314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.192 4.192 3 C 0.177 3.823 4 C -0.134 4.134 5 O -0.562 6.562 6 C -0.166 4.166 7 C 0.514 3.486 8 O -0.539 6.539 9 N -0.603 5.603 10 C 0.106 3.894 11 C -0.134 4.134 12 C -0.138 4.138 13 C 0.173 3.827 14 H 0.059 0.941 15 N -0.745 5.745 16 C -0.245 4.245 17 H 0.091 0.909 18 C 0.007 3.993 19 N -0.932 5.932 20 Si 0.884 3.116 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.277 1.277 24 C 0.103 3.897 25 H 0.102 0.898 26 H 0.092 0.908 27 H 0.106 0.894 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.387 0.613 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.361 0.639 41 H 0.260 0.740 42 H 0.061 0.939 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.864 -9.412 19.162 23.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.210 4.210 3 C 0.136 3.864 4 C -0.191 4.191 5 O -0.372 6.372 6 C -0.206 4.206 7 C 0.303 3.697 8 O -0.418 6.418 9 N -0.336 5.336 10 C -0.017 4.017 11 C -0.172 4.172 12 C -0.178 4.178 13 C 0.063 3.937 14 H 0.077 0.923 15 N -0.388 5.388 16 C -0.375 4.375 17 H 0.108 0.892 18 C -0.189 4.189 19 N -0.580 5.580 20 Si 0.714 3.286 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.020 4.020 25 H 0.120 0.880 26 H 0.110 0.890 27 H 0.124 0.876 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.240 0.760 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.194 0.806 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.458 -9.131 19.666 24.073 hybrid contribution -0.391 -1.362 -1.461 2.036 sum 10.067 -10.493 18.205 23.300 Atomic orbital electron populations 1.23633 0.95992 1.01711 0.97137 1.23198 0.96811 0.97656 1.03366 1.19801 0.88167 0.85387 0.93068 1.21700 0.98680 1.02518 0.96198 1.86420 1.50982 1.48662 1.51162 1.22472 0.99776 1.04932 0.93424 1.20573 0.88638 0.76166 0.84362 1.90660 1.15808 1.49274 1.86037 1.48114 1.09043 1.70355 1.06136 1.21810 0.80633 0.98473 1.00789 1.21930 1.00704 0.97116 0.97494 1.22251 0.97575 1.02513 0.95500 1.20454 0.90812 0.95300 0.87157 0.92307 1.42673 1.68354 1.05539 1.22207 1.19031 1.29894 0.86772 1.01752 0.89166 1.24664 1.00338 0.96492 0.97415 1.69700 1.44313 1.26558 1.17395 0.86561 0.78403 0.85091 0.78518 1.20959 1.21695 1.20361 1.22007 0.96539 0.98791 0.84663 0.88007 0.88982 0.87565 0.91594 0.91559 0.91155 0.75991 0.88121 0.88068 0.90119 0.91391 0.91593 0.91134 0.91045 0.92621 0.80613 0.92986 0.92022 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 12.60 29.01 0.37 -1.39 16 2 C -0.19 -2.12 7.47 -36.03 -0.27 -2.39 16 3 C 0.18 1.87 1.08 -91.77 -0.10 1.77 16 4 C -0.13 -1.09 8.83 37.16 0.33 -0.76 16 5 O -0.56 -7.34 11.92 -51.83 -0.62 -7.96 16 6 C -0.17 -1.58 3.39 -27.88 -0.09 -1.68 16 7 C 0.51 6.79 7.18 -10.99 -0.08 6.71 16 8 O -0.54 -8.64 11.37 -11.04 -0.13 -8.76 16 9 N -0.60 -7.95 2.97 -172.75 -0.51 -8.46 16 10 C 0.11 1.07 6.34 -3.71 -0.02 1.05 16 11 C -0.13 -1.56 6.08 -26.61 -0.16 -1.73 16 12 C -0.14 -2.21 5.46 -26.69 -0.15 -2.36 16 13 C 0.17 3.24 2.92 -67.79 -0.20 3.05 16 14 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 15 N -0.75 -17.32 4.93 -53.29 -0.26 -17.58 16 16 C -0.24 -6.82 10.41 -15.06 -0.16 -6.98 16 17 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 18 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 19 N -0.93 -29.15 13.97 55.49 0.78 -28.38 16 20 Si 0.88 21.99 27.74 -169.99 -4.71 17.27 16 21 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 23 H -0.28 -6.45 6.52 56.52 0.37 -6.09 16 24 C 0.10 1.67 5.91 -3.69 -0.02 1.65 16 25 H 0.10 1.29 6.41 -52.49 -0.34 0.95 16 26 H 0.09 0.98 8.06 -52.48 -0.42 0.56 16 27 H 0.11 1.02 8.06 -52.48 -0.42 0.59 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.39 5.34 5.78 45.56 0.26 5.61 16 32 H 0.10 0.73 8.12 -51.93 -0.42 0.31 16 33 H 0.10 0.85 7.41 -51.93 -0.38 0.47 16 34 H 0.08 0.60 5.89 -51.93 -0.31 0.29 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.36 8.25 5.66 -40.82 -0.23 8.02 16 41 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.09 1.72 7.01 -51.93 -0.36 1.35 16 LS Contribution 336.93 15.07 5.08 5.08 Total: -1.00 -32.33 336.93 -7.47 -39.81 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -6.44 Total: 11.93 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -0.65 Total: -2.94 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.00 Total: -54.42 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.74 Total: -16.72 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.27 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.33 -7.47 -39.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207950937.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.124 kcal (2) G-P(sol) polarization free energy of solvation -32.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds