Wall clock time and date at job start Tue Mar 31 2020 05:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 120.00289 * 2 1 4 4 C 1.53008 * 109.47069 * 124.99768 * 3 2 1 5 5 O 1.42900 * 109.47028 * 179.97438 * 4 3 2 6 6 C 1.42900 * 113.99803 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.46799 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00250 * 0.02562 * 7 6 5 9 9 N 1.34787 * 119.99793 * 179.97438 * 7 6 5 10 10 C 1.46926 * 120.62918 * 0.02562 * 9 7 6 11 11 C 1.53187 * 108.77227 * 233.33389 * 10 9 7 12 12 C 1.53038 * 109.31606 * 305.36475 * 11 10 9 13 13 C 1.53041 * 109.53768 * 61.36503 * 12 11 10 14 14 H 1.08994 * 109.49464 * 58.62048 * 13 12 11 15 15 N 1.46501 * 109.49881 * 178.68640 * 13 12 11 16 16 C 1.36934 * 120.00096 * 205.00197 * 15 13 12 17 17 H 1.08003 * 119.99879 * 359.97438 * 16 15 13 18 18 C 1.38814 * 120.00097 * 179.97438 * 16 15 13 19 19 N 1.31620 * 120.00102 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99825 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47258 * 90.00092 * 20 18 16 22 22 H 1.48499 * 109.47032 * 209.99997 * 20 18 16 23 23 H 1.48500 * 109.47043 * 329.99819 * 20 18 16 24 24 C 1.46924 * 120.63033 * 179.72182 * 9 7 6 25 25 H 1.07995 * 120.00592 * 179.97438 * 1 2 3 26 26 H 1.08004 * 119.99069 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.99548 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.47244 * 5.00102 * 3 2 1 29 29 H 1.08998 * 109.46912 * 244.99618 * 3 2 1 30 30 H 1.09002 * 109.46666 * 60.00349 * 4 3 2 31 31 H 1.08991 * 109.46875 * 300.00337 * 4 3 2 32 32 H 1.08997 * 109.46849 * 60.00305 * 6 5 4 33 33 H 1.08997 * 109.47159 * 300.00050 * 6 5 4 34 34 H 1.09002 * 109.58798 * 353.11768 * 10 9 7 35 35 H 1.08996 * 109.58371 * 113.54749 * 10 9 7 36 36 H 1.08999 * 109.50002 * 65.31872 * 11 10 9 37 37 H 1.09001 * 109.49774 * 185.38216 * 11 10 9 38 38 H 1.09003 * 109.46482 * 181.38835 * 12 11 10 39 39 H 1.09007 * 109.46056 * 301.36333 * 12 11 10 40 40 H 0.97001 * 119.99733 * 24.99856 * 15 13 12 41 41 H 0.96994 * 119.99976 * 179.97438 * 19 18 16 42 42 H 1.09003 * 109.58516 * 246.45674 * 24 9 7 43 43 H 1.09002 * 109.58479 * 6.87832 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1817 5 8 3.7501 2.5702 1.1814 6 6 4.6896 2.6989 2.2504 7 6 5.3816 4.0340 2.1529 8 8 5.0979 4.8001 1.2566 9 7 6.3152 4.3771 3.0626 10 6 6.6692 3.4599 4.1544 11 6 6.5362 4.2046 5.4865 12 6 7.3795 5.4808 5.4393 13 6 6.8658 6.3928 4.3228 14 1 5.8180 6.6330 4.5025 15 7 7.6535 7.6278 4.2988 16 6 7.1126 8.7750 3.7828 17 1 6.1053 8.7693 3.3932 18 6 7.8588 9.9453 3.7606 19 7 7.3390 11.0479 3.2641 20 14 9.6012 9.9549 4.4339 21 1 10.5543 9.6201 3.3455 22 1 9.9169 11.3029 4.9710 23 1 9.7175 8.9495 5.5205 24 6 7.0029 5.6727 2.9772 25 1 -0.5401 -0.9352 -0.0004 26 1 -0.5399 0.9354 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3587 2.1316 0.0896 29 1 2.6214 1.4024 -0.9313 30 1 3.7400 0.5064 1.0921 31 1 2.4773 1.2355 2.1130 32 1 5.4285 1.9004 2.1828 33 1 4.1664 2.6300 3.2041 34 1 5.9948 2.6037 4.1456 35 1 7.6969 3.1197 4.0270 36 1 5.4913 4.4651 5.6550 37 1 6.8872 3.5659 6.2970 38 1 7.3062 6.0001 6.3949 39 1 8.4204 5.2214 5.2459 40 1 8.5583 7.6327 4.6485 41 1 7.8603 11.8657 3.2489 42 1 8.0577 5.5124 2.7540 43 1 6.5486 6.2765 2.1916 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211355151.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:13 Heat of formation + Delta-G solvation = -48.356022 kcal Electronic energy + Delta-G solvation = -22080.783851 eV Core-core repulsion = 18741.019767 eV Total energy + Delta-G solvation = -3339.764084 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.05749 -38.25644 -37.12540 -35.23599 -34.63988 -32.36818 -31.36467 -30.26411 -29.06975 -27.45232 -24.78778 -23.75986 -23.23577 -21.77011 -20.52495 -20.10994 -18.91116 -17.57146 -17.35236 -16.68254 -16.52706 -15.56831 -15.47212 -14.92234 -14.70209 -14.30821 -14.13430 -14.02086 -13.63806 -13.40383 -13.08849 -12.83758 -12.60807 -12.54571 -12.33342 -11.81282 -11.62188 -11.48642 -11.38135 -11.23300 -10.94351 -10.75528 -10.66659 -10.29033 -9.91908 -9.90747 -9.72029 -9.59888 -9.50493 -9.10942 -8.40662 -7.29822 -5.76555 -3.14254 1.87574 2.75708 2.81090 3.36337 3.38953 3.44757 3.72345 4.50529 4.58005 4.63372 4.70155 4.76688 4.87033 4.91058 4.94346 5.04545 5.07277 5.12195 5.13141 5.33930 5.43161 5.45033 5.50324 5.63912 5.67879 5.73875 5.78243 5.87609 5.99967 6.04816 6.21020 6.26007 6.36676 6.39043 6.60516 6.72110 6.83877 6.95625 7.58771 7.99309 8.37557 8.42532 9.19023 9.90476 10.08803 11.41437 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028036 B = 0.003085 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.461990 B = 9073.015602 C = 9756.014260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.154 4.154 3 C -0.095 4.095 4 C 0.065 3.935 5 O -0.363 6.363 6 C 0.048 3.952 7 C 0.510 3.490 8 O -0.516 6.516 9 N -0.608 5.608 10 C 0.106 3.894 11 C -0.130 4.130 12 C -0.130 4.130 13 C 0.173 3.827 14 H 0.060 0.940 15 N -0.742 5.742 16 C -0.248 4.248 17 H 0.092 0.908 18 C 0.007 3.993 19 N -0.930 5.930 20 Si 0.885 3.115 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.277 1.277 24 C 0.094 3.906 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.362 0.638 41 H 0.260 0.740 42 H 0.061 0.939 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.246 -25.912 1.525 26.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.172 4.172 3 C -0.132 4.132 4 C -0.012 4.012 5 O -0.281 6.281 6 C -0.032 4.032 7 C 0.296 3.704 8 O -0.390 6.390 9 N -0.345 5.345 10 C -0.017 4.017 11 C -0.169 4.169 12 C -0.168 4.168 13 C 0.062 3.938 14 H 0.078 0.922 15 N -0.384 5.384 16 C -0.378 4.378 17 H 0.110 0.890 18 C -0.189 4.189 19 N -0.577 5.577 20 Si 0.715 3.285 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.030 4.030 25 H 0.117 0.883 26 H 0.117 0.883 27 H 0.128 0.872 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.195 0.805 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.592 -25.126 0.784 25.988 hybrid contribution 1.398 -0.174 0.719 1.582 sum -5.194 -25.300 1.503 25.871 Atomic orbital electron populations 1.23924 0.95912 1.02100 1.00562 1.22803 0.96017 0.97953 1.00409 1.20648 0.98014 0.95917 0.98592 1.22478 0.93971 0.86154 0.98553 1.88023 1.54293 1.37266 1.48539 1.22252 0.92904 0.96352 0.91700 1.20164 0.79957 0.88034 0.82272 1.90755 1.62691 1.52131 1.33451 1.48198 1.39646 1.19239 1.27367 1.21753 1.00975 0.92016 0.86973 1.21877 1.01404 0.97338 0.96267 1.21865 0.99230 0.95449 1.00256 1.20474 0.96338 0.85872 0.91124 0.92210 1.42721 1.14886 1.06285 1.74543 1.19107 0.99961 0.85932 1.32817 0.89030 1.24693 0.97904 0.95573 1.00772 1.69707 1.37048 1.00239 1.50753 0.86551 0.86218 0.76839 0.78903 1.21034 1.21706 1.20327 1.22709 0.96046 0.81921 1.02306 0.88335 0.88314 0.87224 0.90351 0.89869 0.93142 0.93070 0.90593 0.90449 0.90492 0.91240 0.91324 0.90853 0.91280 0.92110 0.80466 0.92993 0.92110 0.88592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.25 14.32 29.01 0.42 -0.83 16 2 C -0.15 -1.08 9.52 -36.03 -0.34 -1.43 16 3 C -0.09 -0.83 6.03 -27.88 -0.17 -1.00 16 4 C 0.07 0.60 5.92 37.16 0.22 0.82 16 5 O -0.36 -4.89 9.88 -55.14 -0.54 -5.44 16 6 C 0.05 0.55 4.77 36.00 0.17 0.72 16 7 C 0.51 8.30 7.78 -10.98 -0.09 8.22 16 8 O -0.52 -11.17 15.91 -14.36 -0.23 -11.40 16 9 N -0.61 -9.03 2.97 -172.75 -0.51 -9.54 16 10 C 0.11 1.07 6.34 -3.71 -0.02 1.05 16 11 C -0.13 -1.37 6.08 -26.62 -0.16 -1.53 16 12 C -0.13 -1.85 5.35 -26.69 -0.14 -1.99 16 13 C 0.17 3.28 2.92 -67.79 -0.20 3.08 16 14 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 15 N -0.74 -17.37 4.93 -53.29 -0.26 -17.63 16 16 C -0.25 -7.07 10.41 -15.06 -0.16 -7.23 16 17 H 0.09 2.85 8.06 -52.48 -0.42 2.43 16 18 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 19 N -0.93 -29.59 13.97 55.49 0.78 -28.82 16 20 Si 0.88 22.02 27.74 -169.99 -4.71 17.31 16 21 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 24 C 0.09 1.74 6.02 -3.69 -0.02 1.72 16 25 H 0.10 0.52 8.06 -52.49 -0.42 0.10 16 26 H 0.10 0.65 7.84 -52.48 -0.41 0.24 16 27 H 0.11 0.63 8.06 -52.49 -0.42 0.21 16 28 H 0.08 0.75 7.79 -51.93 -0.40 0.34 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.65 7.95 -51.93 -0.41 0.23 16 33 H 0.08 0.69 7.69 -51.93 -0.40 0.29 16 34 H 0.08 0.55 5.94 -51.93 -0.31 0.24 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 40 H 0.36 8.21 5.66 -40.82 -0.23 7.98 16 41 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.10 2.16 7.01 -51.93 -0.36 1.79 16 LS Contribution 350.79 15.07 5.29 5.29 Total: -1.00 -35.36 350.79 -7.99 -43.35 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -7.19 Total: 5.18 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -0.59 Total: 1.69 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.00 Total: -55.99 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.77 Total: -16.83 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.71 Total: 17.31 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.36 -7.99 -43.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211355151.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.011 kcal (2) G-P(sol) polarization free energy of solvation -35.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds