Wall clock time and date at job start Tue Mar 31 2020 06:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 119.99774 * 2 1 4 4 H 1.08997 * 109.47016 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.47264 * 120.00146 * 3 2 1 6 6 C 1.52998 * 109.46847 * 294.99387 * 5 3 2 7 7 C 1.53006 * 109.46610 * 239.99835 * 3 2 1 8 8 C 1.50698 * 109.47184 * 65.00465 * 7 3 2 9 9 O 1.21282 * 120.00025 * 359.97438 * 8 7 3 10 10 N 1.34776 * 120.00035 * 180.02562 * 8 7 3 11 11 C 1.46504 * 119.99735 * 179.97438 * 10 8 7 12 12 H 1.08996 * 110.88848 * 31.11304 * 11 10 8 13 13 C 1.54916 * 111.00110 * 267.19054 * 11 10 8 14 14 N 1.47426 * 104.83027 * 204.91880 * 13 11 10 15 15 C 1.36940 * 125.64846 * 204.17338 * 14 13 11 16 16 H 1.08002 * 119.99687 * 359.97425 * 15 14 13 17 17 C 1.38803 * 119.99917 * 179.97438 * 15 14 13 18 18 N 1.31624 * 120.00469 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99845 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47369 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47173 * 120.00279 * 19 17 15 22 22 H 1.48500 * 109.47351 * 240.00202 * 19 17 15 23 23 C 1.47019 * 108.70433 * 24.12915 * 14 13 11 24 24 C 1.54329 * 107.27013 * 358.94315 * 23 14 13 25 25 H 1.09009 * 110.86870 * 219.36969 * 24 23 14 26 26 O 1.42894 * 110.72362 * 96.17249 * 24 23 14 27 27 H 1.08003 * 120.00080 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.00056 * 180.02562 * 1 2 3 29 29 H 1.07993 * 119.99598 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47054 * 54.99714 * 5 3 2 31 31 H 1.08997 * 109.47369 * 174.99795 * 5 3 2 32 32 H 1.09003 * 109.47161 * 179.97438 * 6 5 3 33 33 H 1.08990 * 109.47736 * 300.00257 * 6 5 3 34 34 H 1.09010 * 109.47038 * 60.00610 * 6 5 3 35 35 H 1.09001 * 109.47002 * 184.99869 * 7 3 2 36 36 H 1.08993 * 109.46955 * 305.00306 * 7 3 2 37 37 H 0.96998 * 119.99962 * 359.97438 * 10 8 7 38 38 H 1.09001 * 110.36384 * 323.75504 * 13 11 10 39 39 H 1.08995 * 110.36454 * 86.08304 * 13 11 10 40 40 H 0.96994 * 119.99983 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.88642 * 239.52557 * 23 14 13 42 42 H 1.09002 * 110.01438 * 118.42774 * 23 14 13 43 43 H 0.96702 * 114.00769 * 66.47427 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1335 -0.0005 5 6 2.9431 1.3862 1.2492 6 6 2.0564 1.4309 2.4952 7 6 2.9431 1.3861 -1.2493 8 6 2.0698 1.4300 -2.4766 9 8 0.8626 1.3991 -2.3633 10 7 2.6301 1.5026 -3.7002 11 6 1.7810 1.5447 -4.8934 12 1 0.8347 2.0415 -4.6796 13 6 1.5466 0.1214 -5.4585 14 7 1.2502 0.3271 -6.8879 15 6 0.5410 -0.5293 -7.6872 16 1 0.1457 -1.4473 -7.2780 17 6 0.3302 -0.2175 -9.0233 18 7 0.8123 0.9011 -9.5221 19 14 -0.6379 -1.3853 -10.1134 20 1 -1.0683 -2.5630 -9.3177 21 1 -1.8338 -0.6863 -10.6486 22 1 0.2183 -1.8349 -11.2403 23 6 1.8412 1.6044 -7.3129 24 6 2.5157 2.2317 -6.0747 25 1 2.3587 3.3102 -6.0516 26 8 3.9111 1.9253 -6.0493 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8499 -0.9353 0.0004 30 1 3.5906 0.5105 1.2951 31 1 3.5540 2.2879 1.2055 32 1 2.6831 1.4882 3.3853 33 1 1.4090 2.3064 2.4493 34 1 1.4455 0.5291 2.5390 35 1 3.5540 2.2878 -1.2057 36 1 3.5905 0.5104 -1.2952 37 1 3.5955 1.5269 -3.7908 38 1 2.4440 -0.4860 -5.3407 39 1 0.7000 -0.3501 -4.9596 40 1 0.6653 1.1187 -10.4558 41 1 1.0611 2.2680 -7.6861 42 1 2.5840 1.4311 -8.0916 43 1 4.4161 2.3308 -6.7674 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220203856.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:16 Heat of formation + Delta-G solvation = -51.287332 kcal Electronic energy + Delta-G solvation = -22714.106427 eV Core-core repulsion = 19374.215231 eV Total energy + Delta-G solvation = -3339.891195 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.77255 -38.11988 -36.58843 -34.82076 -33.83487 -31.79783 -31.70451 -30.38095 -28.39016 -27.02897 -24.96718 -24.01548 -21.73055 -20.68787 -20.31030 -19.85079 -19.47681 -17.43094 -16.75258 -16.56389 -15.46274 -15.39659 -14.84161 -14.58770 -14.52067 -14.07195 -13.91930 -13.59621 -13.12712 -13.06893 -12.71194 -12.59150 -12.26512 -12.20420 -11.83532 -11.41704 -11.30064 -11.25476 -10.92369 -10.89580 -10.84445 -10.52668 -10.49473 -10.42869 -10.08233 -9.81432 -9.63389 -9.29890 -8.99292 -8.67279 -8.55090 -6.86160 -5.74221 -3.07036 2.52992 2.96340 3.39600 3.44005 3.46850 3.49521 4.48652 4.57683 4.68773 4.74024 4.88093 5.14691 5.16745 5.32215 5.33092 5.38871 5.43292 5.45927 5.55527 5.64400 5.73925 5.78118 5.78955 5.82811 5.90170 6.01888 6.10924 6.13224 6.23041 6.25942 6.66682 6.70486 6.81943 6.99386 7.01808 7.34662 7.45901 7.73824 7.92550 8.08960 8.20775 8.59716 9.18864 9.79034 10.43722 11.38117 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027336 B = 0.003671 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.057005 B = 7625.098699 C = 8400.580339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.153 4.153 3 C -0.043 4.043 4 H 0.080 0.920 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.134 4.134 8 C 0.506 3.494 9 O -0.536 6.536 10 N -0.712 5.712 11 C 0.140 3.860 12 H 0.103 0.897 13 C 0.132 3.868 14 N -0.601 5.601 15 C -0.223 4.223 16 H 0.080 0.920 17 C -0.011 4.011 18 N -0.927 5.927 19 Si 0.914 3.086 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.291 1.291 23 C 0.155 3.845 24 C 0.067 3.933 25 H 0.059 0.941 26 O -0.568 6.568 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.405 0.595 38 H 0.025 0.975 39 H 0.043 0.957 40 H 0.252 0.748 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.332 3.951 18.224 20.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 C -0.062 4.062 4 H 0.099 0.901 5 C -0.153 4.153 6 C -0.208 4.208 7 C -0.174 4.174 8 C 0.292 3.708 9 O -0.413 6.413 10 N -0.363 5.363 11 C 0.034 3.966 12 H 0.121 0.879 13 C 0.005 3.995 14 N -0.328 5.328 15 C -0.351 4.351 16 H 0.098 0.902 17 C -0.206 4.206 18 N -0.575 5.575 19 Si 0.745 3.255 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.218 1.218 23 C 0.029 3.971 24 C 0.007 3.993 25 H 0.077 0.923 26 O -0.374 6.374 27 H 0.113 0.887 28 H 0.107 0.893 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.240 0.760 38 H 0.042 0.958 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 6.198 3.573 18.609 19.937 hybrid contribution 0.154 -0.298 -1.438 1.476 sum 6.352 3.275 17.171 18.599 Atomic orbital electron populations 1.23684 0.95934 1.01271 0.98979 1.22601 0.95995 0.97008 1.01515 1.20141 0.96525 0.97119 0.92419 0.90141 1.21541 0.97863 1.01848 0.94097 1.21759 0.99820 1.02173 0.97070 1.21704 0.98706 1.04099 0.92891 1.20647 0.89245 0.76249 0.84657 1.90707 1.14759 1.49223 1.86621 1.45822 1.10805 1.74512 1.05208 1.22292 0.93608 0.98443 0.82293 0.87909 1.21823 0.98022 0.93496 0.86171 1.44292 1.62967 1.21223 1.04303 1.19145 1.25499 0.99872 0.90573 0.90244 1.24793 1.01079 0.97828 0.96915 1.69926 1.50108 1.23921 1.13534 0.85997 0.79220 0.79843 0.80452 1.20454 1.21724 1.21765 1.21844 0.96662 0.87573 0.91018 1.23515 0.81263 0.97124 0.97370 0.92286 1.86244 1.19576 1.77221 1.54342 0.88679 0.89278 0.88176 0.91879 0.91919 0.93060 0.92839 0.92373 0.89079 0.89029 0.75997 0.95778 0.93907 0.93801 0.92731 0.92969 0.77378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 13.22 29.01 0.38 -1.67 16 2 C -0.15 -1.81 6.76 -36.03 -0.24 -2.05 16 3 C -0.04 -0.45 1.82 -91.77 -0.17 -0.62 16 4 H 0.08 0.96 7.60 -51.93 -0.39 0.57 16 5 C -0.12 -0.94 5.39 -26.73 -0.14 -1.08 16 6 C -0.15 -1.19 9.73 37.16 0.36 -0.83 16 7 C -0.13 -1.40 5.16 -27.88 -0.14 -1.54 16 8 C 0.51 7.57 7.58 -10.99 -0.08 7.49 16 9 O -0.54 -9.92 13.81 5.56 0.08 -9.84 16 10 N -0.71 -10.89 5.17 -51.73 -0.27 -11.16 16 11 C 0.14 2.63 3.31 -65.78 -0.22 2.41 16 12 H 0.10 2.09 7.54 -51.93 -0.39 1.70 16 13 C 0.13 2.96 6.92 -2.52 -0.02 2.94 16 14 N -0.60 -15.71 3.39 -170.07 -0.58 -16.28 16 15 C -0.22 -6.35 10.28 -15.06 -0.15 -6.51 16 16 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 17 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 18 N -0.93 -27.04 10.31 55.49 0.57 -26.47 16 19 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 23 C 0.15 3.67 5.14 -3.06 -0.02 3.65 16 24 C 0.07 1.22 4.20 -24.90 -0.10 1.12 16 25 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 26 O -0.57 -9.08 12.14 -35.23 -0.43 -9.50 16 27 H 0.09 1.26 7.83 -52.48 -0.41 0.85 16 28 H 0.09 1.06 8.06 -52.49 -0.42 0.63 16 29 H 0.10 1.11 8.06 -52.49 -0.42 0.68 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.49 7.38 -51.92 -0.38 0.11 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.40 5.47 7.59 -40.82 -0.31 5.16 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.05 1.43 7.38 -51.93 -0.38 1.04 16 42 H 0.05 1.35 7.43 -51.93 -0.39 0.96 16 43 H 0.38 4.69 9.12 45.56 0.42 5.11 16 LS Contribution 348.08 15.07 5.25 5.25 Total: -1.00 -32.57 348.08 -7.48 -40.06 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -6.44 Total: 7.68 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -0.64 Total: 2.91 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.27 Total: -53.91 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.35 Total: -19.35 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.57 -7.48 -40.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220203856.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.231 kcal (2) G-P(sol) polarization free energy of solvation -32.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds