Wall clock time and date at job start Tue Mar 31 2020 05:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46957 * 2 1 4 4 C 1.50702 * 109.47002 * 240.00306 * 2 1 3 5 5 H 1.08001 * 119.99762 * 239.99497 * 4 2 1 6 6 C 1.37874 * 120.00304 * 59.99811 * 4 2 1 7 7 N 1.31516 * 119.99731 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00029 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47101 * 90.00300 * 8 6 4 10 10 H 1.48502 * 109.47050 * 210.00004 * 8 6 4 11 11 H 1.48494 * 109.47206 * 330.00279 * 8 6 4 12 12 C 1.52996 * 109.47067 * 119.99885 * 2 1 3 13 13 N 1.46497 * 109.47413 * 300.00208 * 12 2 1 14 14 C 1.34778 * 119.99895 * 179.97438 * 13 12 2 15 15 O 1.21589 * 120.00082 * 359.97438 * 14 13 12 16 16 N 1.34782 * 119.99948 * 179.97438 * 14 13 12 17 17 C 1.46494 * 120.00072 * 180.02562 * 16 14 13 18 18 H 1.09000 * 110.66820 * 322.72305 * 17 16 14 19 19 C 1.55001 * 110.90530 * 199.40146 * 17 16 14 20 20 C 1.55819 * 102.78863 * 241.60156 * 19 17 16 21 21 H 1.09000 * 115.94016 * 201.56124 * 20 19 17 22 22 C 1.55824 * 105.32815 * 72.68898 * 20 19 17 23 23 C 1.55006 * 102.78655 * 287.31471 * 22 20 19 24 24 C 1.55818 * 102.78968 * 359.97438 * 23 22 20 25 25 H 1.08997 * 115.39054 * 201.16090 * 24 23 22 26 26 O 1.46536 * 101.24562 * 327.58533 * 24 23 22 27 27 H 1.09006 * 109.47409 * 299.99827 * 1 2 3 28 28 H 1.09001 * 109.47436 * 60.00138 * 1 2 3 29 29 H 1.08998 * 109.47381 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47472 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47395 * 300.00307 * 3 2 1 32 32 H 1.09001 * 109.46934 * 60.00343 * 3 2 1 33 33 H 0.97003 * 119.99778 * 179.97438 * 7 6 4 34 34 H 1.09005 * 109.46965 * 179.97438 * 12 2 1 35 35 H 1.09007 * 109.47060 * 60.00333 * 12 2 1 36 36 H 0.96995 * 120.00074 * 0.02562 * 13 12 2 37 37 H 0.97008 * 119.99692 * 0.02562 * 16 14 13 38 38 H 1.09005 * 110.75087 * 359.92184 * 19 17 16 39 39 H 1.08994 * 110.74931 * 123.27914 * 19 17 16 40 40 H 1.08996 * 110.75122 * 168.99052 * 22 20 19 41 41 H 1.08999 * 110.90553 * 45.70884 * 22 20 19 42 42 H 1.09003 * 110.74478 * 241.67270 * 23 22 20 43 43 H 1.08998 * 110.90940 * 118.39534 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3225 -1.1194 -4.0079 9 1 1.3448 -2.1614 -4.4124 10 1 2.4872 -0.1401 -5.1120 11 1 3.6307 -1.7565 -3.7120 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8768 -0.4915 3.6695 15 8 2.5751 -1.4806 3.7810 16 7 1.4280 0.1441 4.7700 17 6 1.7819 -0.3564 6.1005 18 1 1.7956 -1.4463 6.1105 19 6 0.8070 0.1902 7.1744 20 6 1.7476 1.0071 8.1104 21 1 1.3785 1.1842 9.1206 22 6 2.1232 2.2857 7.3027 23 6 3.0981 1.7390 6.2288 24 6 3.1568 0.2173 6.5588 25 1 4.0327 -0.3096 6.1803 26 8 2.9891 0.2339 8.0145 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 0.7094 1.1619 -3.4844 34 1 3.1300 -0.7216 1.2490 35 1 1.6766 -1.7489 1.2492 36 1 0.9937 0.7577 2.3564 37 1 0.8705 0.9331 4.6810 38 1 0.0564 0.8376 6.7209 39 1 0.3350 -0.6273 7.7194 40 1 2.6221 3.0137 7.9423 41 1 1.2410 2.7241 6.8361 42 1 4.0827 2.1948 6.3333 43 1 2.7032 1.9020 5.2260 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229856845.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:37 Heat of formation + Delta-G solvation = -64.737547 kcal Electronic energy + Delta-G solvation = -23096.802513 eV Core-core repulsion = 19756.328073 eV Total energy + Delta-G solvation = -3340.474440 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.19907 -39.25060 -36.47022 -34.38239 -33.25653 -31.88047 -30.91752 -30.26907 -28.77708 -25.73245 -25.55817 -24.74575 -22.41190 -21.86312 -20.72863 -20.02214 -18.78400 -18.25394 -16.97081 -16.25975 -15.97503 -15.77024 -14.84481 -14.76099 -14.45312 -14.24349 -13.72749 -13.38937 -12.94782 -12.87715 -12.79790 -12.45382 -12.17800 -11.99973 -11.78436 -11.44468 -11.31857 -11.20418 -11.09490 -10.87413 -10.69226 -10.48570 -10.37666 -10.28204 -10.21210 -9.80572 -9.63704 -9.31736 -8.93610 -8.79618 -8.41869 -8.21087 -6.02530 -4.12370 2.97397 3.28387 3.35399 3.39870 3.56293 3.72000 4.29234 4.35206 4.38626 4.50805 4.65630 4.77291 4.90377 4.97254 5.02429 5.18719 5.24429 5.44593 5.56129 5.67017 5.74801 5.85998 5.89350 5.94227 6.20475 6.28687 6.35952 6.49932 6.65983 6.78982 6.81547 6.89566 7.02442 7.07859 7.27561 7.39698 7.55235 7.69569 8.00602 8.11949 8.37441 8.45390 8.87450 9.01330 9.53482 10.98890 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.040274 B = 0.003399 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.067718 B = 8234.697078 C = 8370.686000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.150 3.850 13 N -0.732 5.732 14 C 0.697 3.303 15 O -0.597 6.597 16 N -0.741 5.741 17 C 0.141 3.859 18 H 0.099 0.901 19 C -0.154 4.154 20 C 0.061 3.939 21 H 0.130 0.870 22 C -0.148 4.148 23 C -0.149 4.149 24 C 0.054 3.946 25 H 0.133 0.867 26 O -0.373 6.373 27 H 0.005 0.995 28 H 0.085 0.915 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.085 0.915 32 H 0.005 0.995 33 H 0.259 0.741 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.393 0.607 37 H 0.393 0.607 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.965 4.747 18.005 18.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.027 3.973 13 N -0.386 5.386 14 C 0.397 3.603 15 O -0.475 6.475 16 N -0.399 5.399 17 C 0.034 3.966 18 H 0.117 0.883 19 C -0.192 4.192 20 C 0.003 3.997 21 H 0.147 0.853 22 C -0.186 4.186 23 C -0.187 4.187 24 C -0.005 4.005 25 H 0.151 0.849 26 O -0.291 6.291 27 H 0.024 0.976 28 H 0.103 0.897 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.103 0.897 32 H 0.024 0.976 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.228 0.772 37 H 0.228 0.772 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.240 3.824 18.095 18.537 hybrid contribution -0.342 0.415 -1.131 1.252 sum -1.582 4.239 16.964 17.557 Atomic orbital electron populations 1.21816 0.97788 0.99143 0.99951 1.18365 0.92781 0.92782 0.90576 1.21811 0.98561 0.98345 0.99948 1.20990 1.31434 1.12089 0.89868 0.92405 1.24876 0.94878 0.94915 0.98848 1.69806 1.36780 1.22726 1.23193 0.86568 0.79354 0.79375 0.82566 1.20722 1.21292 1.19879 1.21588 0.97894 0.95421 0.82364 1.45515 1.55522 1.33004 1.04595 1.16100 0.80562 0.82975 0.80684 1.90891 1.43016 1.27607 1.86028 1.45171 1.57285 1.33017 1.04413 1.22260 0.93442 1.00011 0.80869 0.88340 1.23479 0.97893 1.00839 0.96994 1.24674 0.85261 0.90662 0.99072 0.85259 1.23253 0.99795 0.97721 0.97841 1.23193 1.00193 0.95558 0.99753 1.25087 0.98978 0.96071 0.80358 0.84929 1.90091 1.41886 1.74435 1.22709 0.97601 0.89674 0.95470 0.95465 0.89671 0.97612 0.93040 0.92927 0.92956 0.77236 0.77237 0.89857 0.89723 0.90926 0.90661 0.91051 0.89901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.86 8.08 37.16 0.30 -2.56 16 4 C -0.51 -13.17 8.01 -34.44 -0.28 -13.44 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.43 9.35 55.43 0.52 -22.91 16 8 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 C 0.15 3.18 4.50 -4.05 -0.02 3.16 16 13 N -0.73 -12.75 4.96 -65.22 -0.32 -13.07 16 14 C 0.70 11.93 8.56 -86.91 -0.74 11.18 16 15 O -0.60 -12.63 16.08 5.29 0.09 -12.54 16 16 N -0.74 -9.13 3.64 -56.15 -0.20 -9.33 16 17 C 0.14 1.65 3.13 -65.34 -0.20 1.44 16 18 H 0.10 1.36 7.71 -51.93 -0.40 0.96 16 19 C -0.15 -1.29 6.29 -24.17 -0.15 -1.45 16 20 C 0.06 0.52 5.71 -23.72 -0.14 0.38 16 21 H 0.13 0.81 8.14 -51.93 -0.42 0.39 16 22 C -0.15 -1.20 6.52 -24.16 -0.16 -1.36 16 23 C -0.15 -1.53 6.40 -24.17 -0.15 -1.68 16 24 C 0.05 0.65 5.59 -23.69 -0.13 0.52 16 25 H 0.13 1.73 8.14 -51.93 -0.42 1.31 16 26 O -0.37 -4.51 11.65 -35.23 -0.41 -4.92 16 27 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 28 H 0.08 2.10 6.07 -51.93 -0.32 1.78 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 2.10 6.07 -51.93 -0.32 1.78 16 32 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 33 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 34 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.05 1.18 8.14 -51.92 -0.42 0.75 16 36 H 0.39 6.09 6.18 -40.82 -0.25 5.83 16 37 H 0.39 3.80 8.06 -40.82 -0.33 3.47 16 38 H 0.08 0.57 7.36 -51.93 -0.38 0.19 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.50 7.81 -51.93 -0.41 0.10 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 0.88 6.48 -51.93 -0.34 0.54 16 LS Contribution 331.85 15.07 5.00 5.00 Total: -1.00 -29.43 331.85 -8.69 -38.13 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.79 Total: 7.55 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -1.54 Total: -3.54 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: -0.01 Total: -45.31 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.33 Total: -17.46 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.43 -8.69 -38.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229856845.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.608 kcal (2) G-P(sol) polarization free energy of solvation -29.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds