Wall clock time and date at job start Tue Mar 31 2020 05:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50702 * 119.99666 * 2 1 4 4 C 1.53007 * 109.46598 * 119.72315 * 3 2 1 5 5 O 1.42893 * 109.47599 * 359.72553 * 3 2 1 6 6 C 1.53001 * 109.46906 * 239.71880 * 3 2 1 7 7 C 1.50697 * 109.46745 * 56.09353 * 6 3 2 8 8 O 1.21278 * 120.00304 * 5.70456 * 7 6 3 9 9 N 1.34781 * 120.00026 * 185.69916 * 7 6 3 10 10 C 1.46508 * 119.99660 * 0.02562 * 9 7 6 11 11 C 1.46500 * 120.00251 * 180.02562 * 9 7 6 12 12 C 1.52995 * 109.46969 * 95.49218 * 11 9 7 13 13 H 1.09006 * 112.74021 * 44.63993 * 12 11 9 14 14 C 1.53496 * 113.46992 * 273.89570 * 12 11 9 15 15 C 1.53617 * 83.30433 * 219.17131 * 14 12 11 16 16 N 1.47063 * 88.00387 * 26.02069 * 15 14 12 17 17 C 1.36938 * 136.05651 * 152.89862 * 16 15 14 18 18 H 1.07997 * 120.00464 * 187.52506 * 17 16 15 19 19 C 1.38812 * 120.00014 * 7.52508 * 17 16 15 20 20 N 1.31614 * 119.99937 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00033 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47587 * 89.99648 * 21 19 17 23 23 H 1.48505 * 109.46761 * 209.99728 * 21 19 17 24 24 H 1.48503 * 109.47198 * 329.99442 * 21 19 17 25 25 H 1.07997 * 119.99942 * 0.27793 * 1 2 3 26 26 H 1.07995 * 119.99956 * 180.26959 * 1 2 3 27 27 H 1.07997 * 119.99942 * 179.72207 * 2 1 3 28 28 H 1.08997 * 109.47045 * 55.71613 * 4 3 2 29 29 H 1.09002 * 109.46952 * 175.71128 * 4 3 2 30 30 H 1.08994 * 109.47482 * 295.71000 * 4 3 2 31 31 H 0.96704 * 113.99366 * 300.00136 * 5 3 2 32 32 H 1.08999 * 109.46729 * 176.09381 * 6 3 2 33 33 H 1.08998 * 109.47410 * 296.09122 * 6 3 2 34 34 H 1.08997 * 109.46708 * 89.34683 * 10 9 7 35 35 H 1.08997 * 109.46808 * 209.34405 * 10 9 7 36 36 H 1.08999 * 109.47229 * 329.34338 * 10 9 7 37 37 H 1.08996 * 109.46840 * 215.49405 * 11 9 7 38 38 H 1.08997 * 109.46721 * 335.49361 * 11 9 7 39 39 H 1.08998 * 114.20509 * 332.73976 * 14 12 11 40 40 H 1.09005 * 114.20623 * 105.56665 * 14 12 11 41 41 H 1.09003 * 113.41336 * 271.24167 * 15 14 12 42 42 H 1.08995 * 113.55726 * 140.82900 * 15 14 12 43 43 H 0.97006 * 120.00634 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.9379 1.3892 1.2528 5 8 1.1350 2.3913 -0.0065 6 6 2.9484 1.3831 -1.2457 7 6 2.0987 1.2041 -2.4774 8 8 0.8921 1.1348 -2.3769 9 7 2.6797 1.1210 -3.6907 10 6 4.1374 1.2043 -3.8120 11 6 1.8537 0.9475 -4.8881 12 6 1.5866 2.3125 -5.5255 13 1 2.4800 2.9348 -5.5787 14 6 0.3712 3.0374 -4.9311 15 6 0.1248 3.4431 -6.3921 16 7 0.8529 2.2313 -6.7975 17 6 0.8489 1.3950 -7.8818 18 1 1.4261 0.4825 -7.8622 19 6 0.1028 1.7202 -9.0063 20 7 -0.6011 2.8320 -9.0302 21 14 0.0968 0.5790 -10.4852 22 1 -1.0046 -0.4072 -10.3451 23 1 -0.1052 1.3741 -11.7231 24 1 1.3954 -0.1371 -10.5632 25 1 -0.5400 0.9353 -0.0045 26 1 -0.5400 -0.9353 0.0044 27 1 1.8500 -0.9353 0.0045 28 1 3.5941 0.5200 1.2968 29 1 3.5397 2.2972 1.2156 30 1 2.3028 1.4103 2.1384 31 1 0.5469 2.4013 -0.7740 32 1 3.4402 2.3552 -1.2817 33 1 3.7016 0.5962 -1.2063 34 1 4.5665 0.2058 -3.7287 35 1 4.3975 1.6319 -4.7803 36 1 4.5326 1.8371 -3.0174 37 1 2.3765 0.3097 -5.6008 38 1 0.9067 0.4838 -4.6121 39 1 -0.3875 2.3728 -4.5178 40 1 0.6244 3.8683 -4.2726 41 1 0.6283 4.3673 -6.6758 42 1 -0.9276 3.4325 -6.6756 43 1 -1.1222 3.0595 -9.8161 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233976665.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:26 Heat of formation + Delta-G solvation = -2.267880 kcal Electronic energy + Delta-G solvation = -23269.832540 eV Core-core repulsion = 19932.066988 eV Total energy + Delta-G solvation = -3337.765552 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.31532 -38.41497 -37.37199 -35.17758 -32.94313 -32.20020 -31.35460 -29.29149 -27.87013 -27.58974 -26.07189 -23.38095 -22.83071 -21.87364 -19.72335 -19.17503 -18.99050 -17.22910 -16.79484 -16.39199 -16.26766 -15.68964 -15.05599 -14.67088 -14.40345 -13.98163 -13.70412 -13.46644 -13.10609 -12.70597 -12.66796 -12.55356 -12.24309 -12.08889 -12.06754 -11.98758 -11.66877 -11.44328 -11.07667 -11.01510 -10.82691 -10.76213 -10.38898 -10.10704 -9.86016 -9.80069 -9.74219 -9.43781 -9.04523 -8.77773 -8.26923 -6.84332 -5.76035 -3.08127 2.40872 2.77110 3.15701 3.39190 3.43484 3.45731 4.23833 4.44415 4.51760 4.68097 4.73109 5.07215 5.17791 5.26075 5.26748 5.34411 5.39267 5.43011 5.49214 5.60708 5.65818 5.68054 5.70886 5.90629 5.96929 6.02100 6.06524 6.10699 6.42353 6.53488 6.66262 6.67967 6.77908 6.85023 6.86884 7.28048 7.47349 7.56903 7.60091 7.77332 7.99478 8.35353 9.04538 9.71716 10.68155 11.42259 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029345 B = 0.003927 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.938893 B = 7127.692373 C = 7273.149255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.195 4.195 3 C 0.178 3.822 4 C -0.134 4.134 5 O -0.563 6.563 6 C -0.166 4.166 7 C 0.513 3.487 8 O -0.532 6.532 9 N -0.609 5.609 10 C 0.077 3.923 11 C 0.114 3.886 12 C 0.131 3.869 13 H 0.038 0.962 14 C -0.157 4.157 15 C 0.157 3.843 16 N -0.601 5.601 17 C -0.220 4.220 18 H 0.079 0.921 19 C -0.006 4.006 20 N -0.917 5.917 21 Si 0.910 3.090 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.281 1.281 25 H 0.103 0.897 26 H 0.092 0.908 27 H 0.106 0.894 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.389 0.611 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.049 0.951 41 H 0.024 0.976 42 H 0.062 0.938 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.759 -3.495 18.071 20.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.213 4.213 3 C 0.137 3.863 4 C -0.191 4.191 5 O -0.374 6.374 6 C -0.206 4.206 7 C 0.301 3.699 8 O -0.410 6.410 9 N -0.342 5.342 10 C -0.067 4.067 11 C -0.009 4.009 12 C 0.023 3.977 13 H 0.055 0.945 14 C -0.196 4.196 15 C 0.032 3.968 16 N -0.327 5.327 17 C -0.347 4.347 18 H 0.097 0.903 19 C -0.203 4.203 20 N -0.564 5.564 21 Si 0.740 3.260 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.207 1.207 25 H 0.121 0.879 26 H 0.110 0.890 27 H 0.124 0.876 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.243 0.757 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.042 0.958 42 H 0.080 0.920 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.317 -3.502 18.279 20.814 hybrid contribution 0.056 -0.725 -1.737 1.883 sum 9.373 -4.227 16.542 19.477 Atomic orbital electron populations 1.23656 0.95986 1.01766 0.96969 1.23227 0.96840 0.97699 1.03537 1.19770 0.88134 0.85368 0.93045 1.21698 0.98832 1.02203 0.96348 1.86399 1.51199 1.48585 1.51239 1.22469 0.99830 1.04659 0.93664 1.20497 0.88754 0.76311 0.84343 1.90623 1.14532 1.50037 1.85818 1.47897 1.07189 1.72097 1.07053 1.21788 0.80209 1.01319 1.03341 1.21891 0.95618 0.99082 0.84297 1.22408 0.94536 0.93276 0.87519 0.94454 1.23667 0.98740 0.99528 0.97650 1.21965 0.98046 0.89159 0.87671 1.45629 1.41871 1.28256 1.16905 1.18866 1.25548 0.99430 0.90860 0.90319 1.24826 1.00335 0.97374 0.97739 1.69851 1.33210 1.24022 1.29303 0.86158 0.77719 0.79631 0.82467 1.21502 1.21641 1.20698 0.87900 0.89002 0.87642 0.91245 0.91803 0.91522 0.75716 0.88071 0.88518 0.92828 0.90613 0.91365 0.91249 0.89277 0.90002 0.93265 0.95789 0.91952 0.93643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 12.66 29.01 0.37 -1.45 16 2 C -0.19 -2.25 7.43 -36.03 -0.27 -2.52 16 3 C 0.18 1.96 1.08 -91.77 -0.10 1.86 16 4 C -0.13 -1.14 8.83 37.16 0.33 -0.81 16 5 O -0.56 -7.52 11.93 -52.51 -0.63 -8.15 16 6 C -0.17 -1.68 3.47 -27.88 -0.10 -1.77 16 7 C 0.51 7.08 7.15 -10.98 -0.08 7.00 16 8 O -0.53 -8.79 11.47 -11.72 -0.13 -8.92 16 9 N -0.61 -8.50 2.87 -181.57 -0.52 -9.02 16 10 C 0.08 0.77 10.15 59.85 0.61 1.38 16 11 C 0.11 2.04 5.41 -4.04 -0.02 2.02 16 12 C 0.13 2.69 4.31 -72.40 -0.31 2.38 16 13 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 14 C -0.16 -3.22 8.02 -26.15 -0.21 -3.43 16 15 C 0.16 3.87 7.24 -8.45 -0.06 3.81 16 16 N -0.60 -15.51 3.64 -176.80 -0.64 -16.16 16 17 C -0.22 -6.13 10.55 -15.06 -0.16 -6.29 16 18 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 19 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 20 N -0.92 -27.69 11.71 55.49 0.65 -27.04 16 21 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H 0.10 1.34 6.41 -52.49 -0.34 1.01 16 26 H 0.09 1.04 8.06 -52.49 -0.42 0.61 16 27 H 0.11 1.08 8.06 -52.49 -0.42 0.66 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.39 5.49 5.76 45.56 0.26 5.75 16 32 H 0.10 0.92 7.69 -51.93 -0.40 0.52 16 33 H 0.10 0.76 7.94 -51.93 -0.41 0.34 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.80 8.07 -51.93 -0.42 0.39 16 36 H 0.07 0.52 6.62 -51.93 -0.34 0.18 16 37 H 0.07 1.25 8.11 -51.93 -0.42 0.83 16 38 H 0.09 1.79 7.01 -51.93 -0.36 1.43 16 39 H 0.08 1.74 7.94 -51.93 -0.41 1.33 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 1.68 7.47 -51.93 -0.39 1.30 16 43 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 346.59 15.07 5.22 5.22 Total: -1.00 -32.35 346.59 -7.76 -40.12 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -6.59 Total: 4.86 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -0.10 Total: 1.92 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: -0.52 Total: -52.21 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.76 Total: -17.07 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.35 -7.76 -40.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233976665.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.849 kcal (2) G-P(sol) polarization free energy of solvation -32.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds