Wall clock time and date at job start Tue Mar 31 2020 05:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50696 * 120.00369 * 2 1 4 4 C 1.52999 * 109.47345 * 240.00339 * 3 2 1 5 5 O 1.42901 * 109.46952 * 359.97438 * 3 2 1 6 6 C 1.52997 * 109.47549 * 120.00184 * 3 2 1 7 7 C 1.50703 * 109.47418 * 180.02562 * 6 3 2 8 8 O 1.21274 * 119.99533 * 359.97438 * 7 6 3 9 9 N 1.34773 * 119.99796 * 180.02562 * 7 6 3 10 10 C 1.46497 * 120.00143 * 359.97438 * 9 7 6 11 11 C 1.46496 * 119.99630 * 179.97438 * 9 7 6 12 12 C 1.53004 * 109.47360 * 264.35450 * 11 9 7 13 13 H 1.09003 * 112.77166 * 316.24156 * 12 11 9 14 14 C 1.53753 * 113.55074 * 87.09094 * 12 11 9 15 15 C 1.53498 * 83.25469 * 140.99318 * 14 12 11 16 16 N 1.47063 * 113.47249 * 185.45817 * 12 11 9 17 17 C 1.36939 * 136.05561 * 38.13439 * 16 12 11 18 18 H 1.08002 * 119.99922 * 351.83478 * 17 16 12 19 19 C 1.38809 * 119.99710 * 172.11479 * 17 16 12 20 20 N 1.31615 * 120.00170 * 359.71743 * 19 17 16 21 21 Si 1.86803 * 119.99689 * 179.72610 * 19 17 16 22 22 H 1.48496 * 109.47550 * 59.99378 * 21 19 17 23 23 H 1.48509 * 109.46787 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46875 * 299.99129 * 21 19 17 25 25 H 1.08006 * 119.99988 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.00222 * 359.97438 * 1 2 3 27 27 H 1.08005 * 120.00238 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47346 * 299.99595 * 4 3 2 29 29 H 1.09003 * 109.47168 * 59.99637 * 4 3 2 30 30 H 1.08999 * 109.47448 * 179.97438 * 4 3 2 31 31 H 0.96710 * 113.99602 * 60.00214 * 5 3 2 32 32 H 1.08997 * 109.46803 * 59.99990 * 6 3 2 33 33 H 1.09001 * 109.46897 * 300.00417 * 6 3 2 34 34 H 1.09003 * 109.47114 * 270.21695 * 10 9 7 35 35 H 1.08997 * 109.47460 * 30.22247 * 10 9 7 36 36 H 1.09002 * 109.46839 * 150.22341 * 10 9 7 37 37 H 1.09002 * 109.47359 * 144.35420 * 11 9 7 38 38 H 1.08996 * 109.47378 * 24.35610 * 11 9 7 39 39 H 1.08998 * 114.39514 * 27.43236 * 14 12 11 40 40 H 1.08995 * 114.26904 * 254.54105 * 14 12 11 41 41 H 1.09006 * 113.46879 * 218.98345 * 15 14 12 42 42 H 1.09000 * 113.52353 * 88.55026 * 15 14 12 43 43 H 0.97008 * 120.00211 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.9431 1.3861 -1.2493 5 8 1.1349 2.3912 -0.0006 6 6 2.9432 1.3861 1.2492 7 6 3.6963 2.6914 1.2494 8 8 3.5447 3.4791 0.3398 9 7 4.5390 2.9830 2.2600 10 6 4.7225 2.0312 3.3585 11 6 5.2715 4.2517 2.2600 12 6 6.6644 4.0364 1.6646 13 1 7.1456 3.1307 2.0337 14 6 6.7056 4.1712 0.1335 15 6 8.0456 4.8663 0.4118 16 7 7.5234 5.2278 1.7382 17 6 7.7442 6.2296 2.6454 18 1 7.1112 6.3190 3.5159 19 6 8.7780 7.1335 2.4431 20 7 9.5495 7.0244 1.3823 21 14 9.0745 8.5046 3.6767 22 1 9.3668 7.9174 5.0089 23 1 10.2293 9.3271 3.2345 24 1 7.8634 9.3592 3.7673 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 3.6514 0.5576 -1.2493 29 1 2.3164 1.3284 -2.1393 30 1 3.4878 2.3302 -1.2495 31 1 0.5433 2.4033 0.7643 32 1 3.6514 0.5576 1.2491 33 1 2.3165 1.3283 2.1392 34 1 3.9949 2.2376 4.1435 35 1 4.5789 1.0163 2.9878 36 1 5.7302 2.1316 3.7617 37 1 5.3660 4.6167 3.2827 38 1 4.7297 4.9840 1.6615 39 1 5.9398 4.8266 -0.2815 40 1 6.7955 3.2235 -0.3974 41 1 8.2301 5.7268 -0.2314 42 1 8.8917 4.1802 0.4507 43 1 10.2722 7.6559 1.2412 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233976667.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:29 Heat of formation + Delta-G solvation = 2.995341 kcal Electronic energy + Delta-G solvation = -23085.904642 eV Core-core repulsion = 19748.367320 eV Total energy + Delta-G solvation = -3337.537322 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.18950 -38.44707 -37.48990 -35.11988 -33.14067 -32.17745 -31.44700 -29.10236 -27.83590 -27.54509 -25.97919 -23.36334 -23.10144 -21.81517 -19.80708 -19.14981 -18.93738 -17.26457 -16.77337 -16.52360 -16.00898 -15.54300 -15.28242 -14.68938 -14.54994 -13.94387 -13.79199 -13.35992 -13.14408 -12.86443 -12.64952 -12.36401 -12.26968 -12.06876 -11.93675 -11.76597 -11.54961 -11.38295 -11.17994 -11.03414 -10.78384 -10.71860 -10.38195 -10.26347 -9.81535 -9.75793 -9.67405 -9.41701 -9.22875 -8.74544 -8.18674 -6.81351 -5.73438 -3.05387 1.94602 2.89126 3.22856 3.41425 3.45405 3.46875 4.14137 4.43193 4.50904 4.60984 4.82585 4.95061 4.98976 5.13846 5.29369 5.35819 5.41324 5.50254 5.54110 5.58850 5.66117 5.70497 5.83124 5.94958 6.01018 6.07104 6.15210 6.24551 6.37895 6.46568 6.52855 6.59131 6.75928 6.82339 6.90243 7.31055 7.52014 7.60523 7.62762 7.67882 8.02267 8.49844 9.07197 9.74348 10.71222 11.44882 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034696 B = 0.003666 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.813165 B = 7636.585614 C = 7890.108664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.184 4.184 3 C 0.176 3.824 4 C -0.148 4.148 5 O -0.536 6.536 6 C -0.163 4.163 7 C 0.510 3.490 8 O -0.510 6.510 9 N -0.614 5.614 10 C 0.078 3.922 11 C 0.115 3.885 12 C 0.130 3.870 13 H 0.038 0.962 14 C -0.157 4.157 15 C 0.157 3.843 16 N -0.600 5.600 17 C -0.220 4.220 18 H 0.079 0.921 19 C -0.006 4.006 20 N -0.918 5.918 21 Si 0.910 3.090 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.284 1.284 25 H 0.098 0.902 26 H 0.105 0.895 27 H 0.115 0.885 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.366 0.634 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.048 0.952 41 H 0.062 0.938 42 H 0.024 0.976 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.275 -16.561 0.837 22.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.202 4.202 3 C 0.135 3.865 4 C -0.205 4.205 5 O -0.341 6.341 6 C -0.204 4.204 7 C 0.297 3.703 8 O -0.385 6.385 9 N -0.349 5.349 10 C -0.065 4.065 11 C -0.008 4.008 12 C 0.022 3.978 13 H 0.055 0.945 14 C -0.195 4.195 15 C 0.032 3.968 16 N -0.327 5.327 17 C -0.347 4.347 18 H 0.096 0.904 19 C -0.203 4.203 20 N -0.565 5.565 21 Si 0.740 3.260 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.210 1.210 25 H 0.116 0.884 26 H 0.123 0.877 27 H 0.133 0.867 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.117 0.883 31 H 0.213 0.787 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.042 0.958 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.849 -15.661 -0.078 21.582 hybrid contribution 0.169 0.231 1.543 1.570 sum -14.680 -15.430 1.466 21.348 Atomic orbital electron populations 1.23853 0.96058 1.02302 0.99908 1.23652 0.96744 0.98914 1.00939 1.19874 0.87987 0.83841 0.94811 1.21948 0.98795 1.04689 0.95042 1.86757 1.49986 1.48940 1.48402 1.22411 1.00252 0.97512 1.00203 1.20297 0.79616 0.88302 0.82069 1.90687 1.63855 1.49655 1.34333 1.47918 1.43787 1.20321 1.22846 1.21755 1.02513 0.92498 0.89774 1.21854 0.93018 0.84063 1.01851 1.22470 0.90235 0.91239 0.93836 0.94455 1.23682 1.00682 0.99539 0.95613 1.21941 0.91658 0.96133 0.87112 1.45652 1.45621 1.22762 1.18620 1.18830 1.11023 1.02928 1.01925 0.90353 1.24828 0.97360 0.99831 0.98289 1.69843 1.20661 1.38213 1.27739 0.86234 0.77477 0.81755 0.80490 1.21211 1.21574 1.21032 0.88359 0.87723 0.86729 0.91963 0.92376 0.88310 0.78730 0.88281 0.89153 0.93006 0.91556 0.90737 0.91287 0.89317 0.90018 0.93350 0.92008 0.95806 0.93611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.39 13.93 29.02 0.40 -0.99 16 2 C -0.18 -1.53 8.77 -36.03 -0.32 -1.85 16 3 C 0.18 1.89 0.94 -91.78 -0.09 1.80 16 4 C -0.15 -1.81 8.50 37.16 0.32 -1.49 16 5 O -0.54 -6.62 10.84 -53.50 -0.58 -7.20 16 6 C -0.16 -1.62 3.49 -27.88 -0.10 -1.72 16 7 C 0.51 7.37 7.23 -10.99 -0.08 7.29 16 8 O -0.51 -9.35 12.45 -12.70 -0.16 -9.51 16 9 N -0.61 -8.84 2.87 -181.58 -0.52 -9.36 16 10 C 0.08 0.80 10.26 59.85 0.61 1.42 16 11 C 0.12 2.12 5.42 -4.04 -0.02 2.10 16 12 C 0.13 2.74 4.31 -72.27 -0.31 2.42 16 13 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 14 C -0.16 -3.28 8.03 -26.08 -0.21 -3.49 16 15 C 0.16 3.91 7.23 -8.52 -0.06 3.85 16 16 N -0.60 -15.71 3.64 -176.86 -0.64 -16.35 16 17 C -0.22 -6.19 10.55 -15.06 -0.16 -6.35 16 18 H 0.08 2.10 7.83 -52.49 -0.41 1.68 16 19 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 20 N -0.92 -27.91 11.72 55.49 0.65 -27.26 16 21 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 25 H 0.10 0.60 8.06 -52.48 -0.42 0.18 16 26 H 0.10 0.79 6.41 -52.49 -0.34 0.46 16 27 H 0.11 0.79 8.06 -52.48 -0.42 0.37 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.10 1.53 5.51 -51.93 -0.29 1.25 16 31 H 0.37 3.19 8.05 45.56 0.37 3.56 16 32 H 0.10 0.81 7.40 -51.93 -0.38 0.42 16 33 H 0.09 0.71 8.11 -51.93 -0.42 0.29 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.51 6.45 -51.93 -0.33 0.17 16 36 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 37 H 0.07 1.28 8.11 -51.93 -0.42 0.85 16 38 H 0.09 1.85 7.00 -51.93 -0.36 1.48 16 39 H 0.08 1.80 7.95 -51.93 -0.41 1.39 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.06 1.69 7.49 -51.93 -0.39 1.30 16 42 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 348.24 15.07 5.25 5.25 Total: -1.00 -34.12 348.24 -7.46 -41.59 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.33 Total: 2.79 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -0.10 Total: 2.73 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -0.51 Total: -52.97 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.74 Total: -16.70 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.12 -7.46 -41.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233976667.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.583 kcal (2) G-P(sol) polarization free energy of solvation -34.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds