Wall clock time and date at job start Tue Mar 31 2020 06:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46923 * 2 1 4 4 H 1.09001 * 109.47053 * 177.82120 * 3 2 1 5 5 C 1.50700 * 109.47295 * 297.81273 * 3 2 1 6 6 H 1.08000 * 119.99794 * 119.99523 * 5 3 2 7 7 C 1.37881 * 120.00099 * 300.00815 * 5 3 2 8 8 N 1.31512 * 120.00314 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99947 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47057 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46978 * 119.99457 * 9 7 5 12 12 H 1.48487 * 109.47394 * 239.99524 * 9 7 5 13 13 N 1.46890 * 109.47424 * 57.81786 * 3 2 1 14 14 C 1.46854 * 111.00269 * 182.37818 * 13 3 2 15 15 C 1.53038 * 109.51870 * 174.18603 * 14 13 3 16 16 C 1.53144 * 109.24339 * 59.22850 * 15 14 13 17 17 C 1.53150 * 109.09944 * 302.19714 * 16 15 14 18 18 C 1.46837 * 111.00126 * 58.12272 * 13 3 2 19 19 C 1.53023 * 109.36916 * 182.59781 * 16 15 14 20 20 O 1.43248 * 108.66617 * 288.93999 * 19 16 15 21 21 C 1.42958 * 112.98451 * 291.61464 * 20 19 16 22 22 C 1.50346 * 109.81793 * 49.57320 * 21 20 19 23 23 O 1.21281 * 118.83405 * 164.15016 * 22 21 20 24 24 N 1.33868 * 122.33279 * 344.12494 * 22 21 20 25 25 H 1.08996 * 109.47488 * 65.09955 * 1 2 3 26 26 H 1.09005 * 109.46875 * 185.10123 * 1 2 3 27 27 H 1.09000 * 109.46956 * 305.09950 * 1 2 3 28 28 H 1.09002 * 109.47337 * 240.00373 * 2 1 3 29 29 H 1.09000 * 109.47563 * 120.00232 * 2 1 3 30 30 H 0.96992 * 120.00221 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.46029 * 54.17448 * 14 13 3 32 32 H 1.08994 * 109.46031 * 294.20422 * 14 13 3 33 33 H 1.09008 * 109.51033 * 299.29349 * 15 14 13 34 34 H 1.08999 * 109.50736 * 179.15431 * 15 14 13 35 35 H 1.09005 * 109.50790 * 177.71949 * 17 16 15 36 36 H 1.09000 * 109.51181 * 297.85684 * 17 16 15 37 37 H 1.08995 * 109.46120 * 305.82550 * 18 13 3 38 38 H 1.08997 * 109.46214 * 65.79606 * 18 13 3 39 39 H 1.09004 * 109.60667 * 48.69822 * 19 16 15 40 40 H 1.09004 * 109.60704 * 169.18688 * 19 16 15 41 41 H 1.09007 * 109.41646 * 289.46445 * 21 20 19 42 42 H 1.09004 * 109.36000 * 169.64274 * 21 20 19 43 43 H 0.97002 * 118.72572 * 181.92812 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1293 1.4428 0.0391 5 6 1.5824 2.1371 -1.2567 6 1 0.9584 3.0162 -1.1911 7 6 1.9601 1.6502 -2.4901 8 7 2.7201 0.5799 -2.5700 9 14 1.3923 2.5108 -4.0478 10 1 0.5537 3.6826 -3.6884 11 1 2.5755 2.9678 -4.8202 12 1 0.5969 1.5668 -4.8731 13 7 1.5077 2.1501 1.1721 14 6 1.9314 3.5562 1.1753 15 6 1.2436 4.2948 2.3257 16 6 1.6198 3.6264 3.6512 17 6 1.2087 2.1519 3.6033 18 6 1.8973 1.4745 2.4163 19 6 0.8827 4.3221 4.7976 20 8 1.4529 5.6225 4.9870 21 6 2.7874 5.5779 5.4977 22 6 3.6139 4.6235 4.6813 23 8 4.8223 4.6690 4.7742 24 7 3.0633 3.7249 3.8558 25 1 -0.3634 0.4327 -0.9321 26 1 -0.3633 -1.0237 0.0914 27 1 -0.3633 0.5909 0.8408 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.9861 0.2376 -3.4376 31 1 1.6552 4.0208 0.2287 32 1 3.0124 3.6094 1.3041 33 1 0.1628 4.2529 2.1907 34 1 1.5697 5.3348 2.3371 35 1 1.5099 1.6598 4.5282 36 1 0.1273 2.0791 3.4870 37 1 1.5964 0.4279 2.3708 38 1 2.9784 1.5364 2.5400 39 1 -0.1739 4.4189 4.5477 40 1 0.9928 3.7379 5.7112 41 1 2.7675 5.2439 6.5351 42 1 3.2275 6.5738 5.4461 43 1 3.6450 3.1155 3.3751 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166000.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:33 Heat of formation + Delta-G solvation = -73.753893 kcal Electronic energy + Delta-G solvation = -24047.268652 eV Core-core repulsion = 20706.403234 eV Total energy + Delta-G solvation = -3340.865418 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.03804 -38.53827 -37.59405 -35.58750 -33.09384 -31.64900 -30.99517 -30.23863 -28.32686 -27.09402 -25.67665 -23.63829 -22.81028 -22.10789 -20.83741 -19.24763 -18.82620 -17.64633 -16.87006 -16.18274 -16.02275 -15.47705 -15.08824 -14.76777 -14.64742 -14.25143 -14.12420 -13.66325 -13.42890 -13.17717 -13.08759 -12.47916 -12.08342 -11.99211 -11.89642 -11.55475 -11.35052 -11.01177 -10.95765 -10.88332 -10.64080 -10.54790 -10.47057 -10.16418 -9.95541 -9.77332 -9.48828 -9.36321 -9.07449 -8.78497 -8.43319 -7.22839 -6.04250 -4.08138 2.46083 3.03651 3.27135 3.35858 3.39035 3.58814 4.24671 4.36889 4.49885 4.72943 4.79670 4.86337 4.94178 5.14714 5.27424 5.29264 5.43633 5.50396 5.67066 5.81281 5.86760 5.94562 6.11828 6.21858 6.29890 6.43248 6.47253 6.53493 6.59546 6.68351 6.74858 6.82763 7.07292 7.27133 7.27695 7.35435 7.60074 7.69589 7.79591 8.07682 8.11233 8.28981 8.53750 8.97119 9.56344 11.02161 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024227 B = 0.004877 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.454182 B = 5739.404127 C = 6015.277366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.112 4.112 3 C 0.217 3.783 4 H -0.004 1.004 5 C -0.497 4.497 6 H 0.063 0.937 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.284 1.284 13 N -0.526 5.526 14 C 0.063 3.937 15 C -0.117 4.117 16 C 0.134 3.866 17 C -0.117 4.117 18 C 0.050 3.950 19 C 0.055 3.945 20 O -0.367 6.367 21 C 0.048 3.952 22 C 0.489 3.511 23 O -0.554 6.554 24 N -0.702 5.702 25 H 0.054 0.946 26 H 0.014 0.986 27 H 0.047 0.953 28 H 0.092 0.908 29 H 0.013 0.987 30 H 0.260 0.740 31 H 0.090 0.910 32 H 0.018 0.982 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.016 0.984 39 H 0.117 0.883 40 H 0.061 0.939 41 H 0.087 0.913 42 H 0.128 0.872 43 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.832 4.887 14.454 16.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.150 4.150 3 C 0.111 3.889 4 H 0.014 0.986 5 C -0.536 4.536 6 H 0.081 0.919 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.251 5.251 14 C -0.065 4.065 15 C -0.156 4.156 16 C 0.047 3.953 17 C -0.155 4.155 18 C -0.079 4.079 19 C -0.023 4.023 20 O -0.285 6.285 21 C -0.031 4.031 22 C 0.274 3.726 23 O -0.433 6.433 24 N -0.356 5.356 25 H 0.073 0.927 26 H 0.033 0.967 27 H 0.066 0.934 28 H 0.110 0.890 29 H 0.031 0.969 30 H 0.070 0.930 31 H 0.109 0.891 32 H 0.036 0.964 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.034 0.966 39 H 0.135 0.865 40 H 0.080 0.920 41 H 0.105 0.895 42 H 0.146 0.854 43 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -4.871 5.106 14.398 16.034 hybrid contribution 1.033 -0.192 -1.078 1.505 sum -3.838 4.913 13.320 14.707 Atomic orbital electron populations 1.21460 0.97229 0.97263 1.01860 1.21588 0.95185 0.98153 1.00120 1.19246 0.92397 0.90801 0.86417 0.98635 1.21086 1.30992 1.11900 0.89591 0.91876 1.24901 0.95164 0.95056 0.98986 1.69876 1.36248 1.22574 1.24405 0.86527 0.78415 0.79633 0.83369 1.19748 1.21230 1.21062 1.62051 1.60117 1.01117 1.01839 1.21937 0.95872 0.90242 0.98484 1.22031 1.01962 0.98815 0.92763 1.21236 0.79831 0.97336 0.96870 1.21919 1.02492 0.92410 0.98695 1.22058 0.95978 0.99389 0.90486 1.23116 0.98792 0.83840 0.96504 1.88192 1.27130 1.27752 1.85447 1.22797 0.82355 1.00935 0.97033 1.20997 0.89073 0.81891 0.80593 1.90775 1.14684 1.71238 1.66615 1.45972 1.08386 1.36256 1.44977 0.92711 0.96678 0.93424 0.88960 0.96867 0.93044 0.89145 0.96416 0.90024 0.91490 0.91681 0.89364 0.90024 0.96565 0.86542 0.92034 0.89472 0.85419 0.75871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.49 9.50 37.16 0.35 -2.13 16 2 C -0.11 -2.53 5.02 -26.73 -0.13 -2.67 16 3 C 0.22 5.08 1.76 -68.87 -0.12 4.96 16 4 H 0.00 -0.10 8.14 -51.93 -0.42 -0.53 16 5 C -0.50 -12.73 6.79 -34.44 -0.23 -12.96 16 6 H 0.06 1.63 6.53 -52.49 -0.34 1.28 16 7 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 8 N -0.89 -24.63 11.31 55.43 0.63 -24.00 16 9 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.53 -9.97 3.57 -228.09 -0.81 -10.78 16 14 C 0.06 1.13 5.06 -3.83 -0.02 1.11 16 15 C -0.12 -1.64 4.96 -26.64 -0.13 -1.77 16 16 C 0.13 1.61 0.82 -131.86 -0.11 1.50 16 17 C -0.12 -1.40 5.05 -26.63 -0.13 -1.54 16 18 C 0.05 0.79 4.98 -3.84 -0.02 0.77 16 19 C 0.05 0.53 5.55 37.17 0.21 0.73 16 20 O -0.37 -4.03 10.64 -35.23 -0.37 -4.41 16 21 C 0.05 0.50 6.98 35.83 0.25 0.75 16 22 C 0.49 6.85 7.84 -11.56 -0.09 6.76 16 23 O -0.55 -9.86 17.84 5.56 0.10 -9.76 16 24 N -0.70 -9.59 4.31 -48.02 -0.21 -9.79 16 25 H 0.05 1.23 7.47 -51.93 -0.39 0.85 16 26 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.05 0.92 7.37 -51.93 -0.38 0.54 16 28 H 0.09 2.38 6.02 -51.93 -0.31 2.07 16 29 H 0.01 0.27 6.37 -51.93 -0.33 -0.06 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.09 1.82 6.14 -51.93 -0.32 1.50 16 32 H 0.02 0.34 7.34 -51.93 -0.38 -0.04 16 33 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 34 H 0.07 0.94 8.03 -51.93 -0.42 0.53 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.08 1.34 6.00 -51.93 -0.31 1.03 16 38 H 0.02 0.27 6.62 -51.93 -0.34 -0.07 16 39 H 0.12 0.93 8.10 -51.93 -0.42 0.51 16 40 H 0.06 0.50 8.07 -51.93 -0.42 0.08 16 41 H 0.09 0.72 8.14 -51.92 -0.42 0.29 16 42 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.40 6.08 6.51 -40.82 -0.27 5.82 16 LS Contribution 324.00 15.07 4.88 4.88 Total: -1.00 -29.22 324.00 -7.81 -37.04 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -6.73 Total: 4.04 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -0.28 Total: -2.97 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: -0.39 Total: -44.58 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.28 Total: -14.17 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.22 -7.81 -37.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166000.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.716 kcal (2) G-P(sol) polarization free energy of solvation -29.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds