Wall clock time and date at job start Tue Mar 31 2020 06:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46982 * 2 1 4 4 H 1.09000 * 109.47134 * 304.33126 * 3 2 1 5 5 C 1.50702 * 109.47183 * 184.33409 * 3 2 1 6 6 H 1.07997 * 119.99910 * 240.00391 * 5 3 2 7 7 C 1.37879 * 119.99808 * 59.72057 * 5 3 2 8 8 N 1.31506 * 120.00275 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99947 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46907 * 89.99948 * 9 7 5 11 11 H 1.48501 * 109.47306 * 210.00373 * 9 7 5 12 12 H 1.48504 * 109.46732 * 330.00489 * 9 7 5 13 13 N 1.46893 * 109.47451 * 64.33376 * 3 2 1 14 14 C 1.46851 * 111.00044 * 65.63570 * 13 3 2 15 15 C 1.53078 * 109.50236 * 185.95304 * 14 13 3 16 16 C 1.52913 * 109.29450 * 301.09020 * 15 14 13 17 17 C 1.53258 * 109.62461 * 177.64595 * 16 15 14 18 18 C 1.53144 * 108.42786 * 58.59191 * 17 16 15 19 19 N 1.46060 * 109.92523 * 47.71647 * 18 17 16 20 20 C 1.33723 * 123.03145 * 340.40156 * 19 18 17 21 21 O 1.21511 * 118.48164 * 182.47183 * 20 19 18 22 22 O 1.34244 * 123.03360 * 2.48853 * 20 19 18 23 23 C 1.52909 * 109.53161 * 57.31391 * 16 15 14 24 24 C 1.46843 * 111.00398 * 189.91092 * 13 3 2 25 25 H 1.09003 * 109.47172 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47175 * 300.00039 * 1 2 3 27 27 H 1.09007 * 109.47313 * 60.00009 * 1 2 3 28 28 H 1.08998 * 109.47175 * 239.99961 * 2 1 3 29 29 H 1.08998 * 109.47410 * 119.99704 * 2 1 3 30 30 H 0.97002 * 120.00339 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.46863 * 305.96358 * 14 13 3 32 32 H 1.09003 * 109.45996 * 65.94798 * 14 13 3 33 33 H 1.08998 * 109.49631 * 181.14606 * 15 14 13 34 34 H 1.08994 * 109.49567 * 61.03341 * 15 14 13 35 35 H 1.09004 * 109.67733 * 178.30945 * 17 16 15 36 36 H 1.09000 * 109.67783 * 298.84733 * 17 16 15 37 37 H 1.08997 * 109.39718 * 287.58041 * 18 17 16 38 38 H 1.08996 * 109.39977 * 167.85693 * 18 17 16 39 39 H 0.97003 * 118.47764 * 160.37703 * 19 18 17 40 40 H 1.09003 * 109.50371 * 182.73088 * 23 16 15 41 41 H 1.08999 * 109.52911 * 62.64256 * 23 16 15 42 42 H 1.08998 * 109.46693 * 294.05412 * 24 13 3 43 43 H 1.09006 * 109.46371 * 54.04191 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6146 1.9782 -0.8486 5 6 3.5431 1.4439 -0.1074 6 1 4.1398 1.8915 0.6736 7 6 4.1567 0.8686 -1.1999 8 7 3.4303 0.3192 -2.1485 9 14 6.0200 0.8697 -1.3327 10 1 6.5624 -0.3566 -0.6946 11 1 6.4143 0.8989 -2.7641 12 1 6.5646 2.0679 -0.6447 13 7 1.6376 2.1042 1.2483 14 6 2.3000 1.4905 2.4063 15 6 1.7472 2.1036 3.6954 16 6 1.9882 3.6135 3.6807 17 6 1.3853 4.2433 4.9412 18 6 2.0363 3.5937 6.1657 19 7 3.4872 3.5630 6.0006 20 6 4.0882 3.6793 4.8117 21 8 5.2996 3.5969 4.7642 22 8 3.4150 3.8831 3.6683 23 6 1.3359 4.2232 2.4394 24 6 1.9012 3.5475 1.1875 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8620 -0.0859 -2.9169 31 1 2.1126 0.4168 2.4052 32 1 3.3733 1.6720 2.3490 33 1 2.2533 1.6626 4.5542 34 1 0.6773 1.9065 3.7622 35 1 1.5827 5.3153 4.9463 36 1 0.3097 4.0676 4.9608 37 1 1.6631 2.5756 6.2768 38 1 1.7855 4.1689 7.0570 39 1 4.0404 3.4537 6.7900 40 1 1.5491 5.2916 2.4039 41 1 0.2578 4.0685 2.4811 42 1 2.9764 3.7186 1.1364 43 1 1.4241 3.9669 0.3017 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173764.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:36 Heat of formation + Delta-G solvation = -79.936112 kcal Electronic energy + Delta-G solvation = -24336.353476 eV Core-core repulsion = 20995.219976 eV Total energy + Delta-G solvation = -3341.133500 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.21881 -38.48197 -36.74803 -35.54107 -34.08803 -32.08078 -31.17669 -30.41365 -29.03991 -26.36148 -24.67828 -23.35492 -22.94947 -22.54958 -20.52297 -19.28766 -18.99505 -17.53634 -17.26321 -16.14382 -15.99672 -15.58038 -14.88604 -14.55176 -14.52769 -14.18025 -13.74552 -13.66832 -13.54387 -12.88203 -12.63118 -12.33797 -12.15808 -11.75473 -11.67949 -11.55513 -11.29850 -11.10820 -10.98760 -10.80253 -10.71959 -10.52939 -10.44755 -10.05110 -9.93153 -9.72353 -9.59978 -9.33366 -9.26692 -9.03293 -8.30542 -7.10374 -5.93367 -4.05677 2.70359 2.99818 3.34330 3.40956 3.48934 3.52530 4.32998 4.42246 4.48118 4.72451 4.88953 4.96819 5.00354 5.23210 5.30887 5.32111 5.56825 5.66326 5.75134 5.86159 5.96247 6.02833 6.09328 6.19974 6.30829 6.46172 6.50084 6.58903 6.69028 6.75245 6.82132 6.91457 7.11682 7.19405 7.37681 7.63826 7.81309 7.81953 8.00287 8.19630 8.24665 8.34552 8.50713 9.04649 9.62509 11.05900 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018041 B = 0.006439 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.615307 B = 4347.729286 C = 5321.342480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 C 0.215 3.785 4 H 0.038 0.962 5 C -0.541 4.541 6 H 0.059 0.941 7 C 0.069 3.931 8 N -0.888 5.888 9 Si 0.884 3.116 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.532 5.532 14 C 0.062 3.938 15 C -0.134 4.134 16 C 0.119 3.881 17 C -0.163 4.163 18 C 0.105 3.895 19 N -0.737 5.737 20 C 0.657 3.343 21 O -0.540 6.540 22 O -0.323 6.323 23 C -0.101 4.101 24 C 0.061 3.939 25 H 0.024 0.976 26 H 0.047 0.953 27 H 0.038 0.962 28 H 0.093 0.907 29 H 0.031 0.969 30 H 0.260 0.740 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.414 0.586 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.046 0.954 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.611 6.072 15.280 18.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.150 4.150 3 C 0.109 3.891 4 H 0.056 0.944 5 C -0.580 4.580 6 H 0.077 0.923 7 C -0.133 4.133 8 N -0.526 5.526 9 Si 0.712 3.288 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.257 5.257 14 C -0.066 4.066 15 C -0.172 4.172 16 C 0.082 3.918 17 C -0.201 4.201 18 C -0.019 4.019 19 N -0.404 5.404 20 C 0.410 3.590 21 O -0.426 6.426 22 O -0.234 6.234 23 C -0.138 4.138 24 C -0.068 4.068 25 H 0.043 0.957 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.111 0.889 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.121 0.879 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.251 0.749 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.064 0.936 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.578 5.983 14.622 17.977 hybrid contribution 2.003 -0.030 0.300 2.025 sum -6.576 5.953 14.922 17.359 Atomic orbital electron populations 1.21703 0.98900 0.98324 1.00502 1.21610 0.92152 0.99248 1.01970 1.19255 0.93075 0.91077 0.85702 0.94379 1.21794 0.92805 1.37544 1.05906 0.92296 1.24877 0.97792 0.95011 0.95617 1.69866 1.34795 1.38160 1.09815 0.86717 0.86395 0.78664 0.77070 1.20731 1.21252 1.19804 1.62451 1.56993 1.01560 1.04664 1.21842 0.97522 0.98630 0.88640 1.22226 1.02696 0.92601 0.99687 1.22395 0.76637 0.96523 0.96239 1.22547 1.02322 1.01290 0.93912 1.21536 0.79846 1.01703 0.98839 1.45309 1.08196 1.78124 1.08801 1.17965 0.85508 0.75723 0.79799 1.91022 1.11086 1.55047 1.85427 1.86801 1.23800 1.81029 1.31789 1.21684 0.99956 0.99269 0.92933 1.21821 0.99723 0.89962 0.95278 0.95709 0.93423 0.94259 0.88904 0.94999 0.92993 0.90886 0.93603 0.92067 0.89685 0.89960 0.87938 0.90907 0.89965 0.74878 0.91311 0.89401 0.93562 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.79 37.16 0.36 -2.33 16 2 C -0.11 -2.60 5.14 -26.73 -0.14 -2.74 16 3 C 0.22 5.22 1.72 -68.87 -0.12 5.10 16 4 H 0.04 1.02 7.99 -51.93 -0.41 0.61 16 5 C -0.54 -14.76 7.24 -34.44 -0.25 -15.01 16 6 H 0.06 1.68 5.85 -52.49 -0.31 1.38 16 7 C 0.07 1.93 5.29 -17.82 -0.09 1.83 16 8 N -0.89 -25.19 11.28 55.43 0.62 -24.57 16 9 Si 0.88 22.14 29.54 -169.99 -5.02 17.12 16 10 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.27 -7.00 7.11 56.52 0.40 -6.59 16 13 N -0.53 -10.72 4.02 -228.03 -0.92 -11.64 16 14 C 0.06 1.20 4.66 -3.81 -0.02 1.18 16 15 C -0.13 -1.91 4.47 -26.74 -0.12 -2.03 16 16 C 0.12 1.61 0.69 -90.58 -0.06 1.55 16 17 C -0.16 -1.45 5.12 -26.52 -0.14 -1.58 16 18 C 0.11 0.81 6.51 -4.21 -0.03 0.79 16 19 N -0.74 -8.27 5.43 -65.90 -0.36 -8.62 16 20 C 0.66 11.09 8.03 53.59 0.43 11.52 16 21 O -0.54 -11.45 17.95 -19.40 -0.35 -11.80 16 22 O -0.32 -5.71 8.89 -39.36 -0.35 -6.06 16 23 C -0.10 -1.40 5.13 -26.74 -0.14 -1.53 16 24 C 0.06 1.14 5.07 -3.81 -0.02 1.12 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.88 7.73 -51.93 -0.40 0.48 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.09 2.45 5.94 -51.93 -0.31 2.14 16 29 H 0.03 0.73 6.24 -51.93 -0.32 0.41 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.07 1.45 6.12 -51.93 -0.32 1.13 16 32 H 0.05 1.06 6.05 -51.93 -0.31 0.74 16 33 H 0.06 0.83 6.38 -51.93 -0.33 0.49 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.51 7.11 -51.93 -0.37 0.14 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.41 3.83 8.84 -40.82 -0.36 3.47 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.05 1.02 6.95 -51.93 -0.36 0.66 16 43 H 0.07 1.26 8.01 -51.93 -0.42 0.85 16 LS Contribution 323.96 15.07 4.88 4.88 Total: -1.00 -32.29 323.96 -8.56 -40.84 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.74 Total: 1.98 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -0.32 Total: -2.14 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: -0.65 Total: -44.83 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.70 Total: -17.86 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.29 -8.56 -40.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173764.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.091 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds