Wall clock time and date at job start Tue Mar 31 2020 06:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47270 * 2 1 4 4 H 1.08996 * 109.47182 * 177.43557 * 3 2 1 5 5 C 1.50703 * 109.46761 * 297.43132 * 3 2 1 6 6 H 1.08001 * 119.99966 * 120.00296 * 5 3 2 7 7 C 1.37879 * 119.99987 * 300.00028 * 5 3 2 8 8 N 1.31507 * 120.00068 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99598 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47435 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47101 * 120.00368 * 9 7 5 12 12 H 1.48511 * 109.46905 * 239.99933 * 9 7 5 13 13 N 1.46900 * 109.47462 * 57.43307 * 3 2 1 14 14 C 1.46849 * 111.00023 * 54.32699 * 13 3 2 15 15 C 1.53068 * 109.49932 * 185.95444 * 14 13 3 16 16 C 1.52914 * 109.29670 * 301.08781 * 15 14 13 17 17 C 1.53267 * 109.62666 * 177.64822 * 16 15 14 18 18 C 1.53160 * 108.41320 * 58.57364 * 17 16 15 19 19 N 1.46050 * 109.92637 * 47.73061 * 18 17 16 20 20 C 1.33727 * 123.03525 * 340.39984 * 19 18 17 21 21 O 1.21504 * 118.48922 * 182.44697 * 20 19 18 22 22 O 1.34258 * 123.03007 * 2.46859 * 20 19 18 23 23 C 1.52913 * 109.52869 * 57.31509 * 16 15 14 24 24 C 1.46845 * 111.00109 * 178.60465 * 13 3 2 25 25 H 1.09005 * 109.46833 * 55.27962 * 1 2 3 26 26 H 1.08998 * 109.47127 * 175.27936 * 1 2 3 27 27 H 1.09004 * 109.46881 * 295.28700 * 1 2 3 28 28 H 1.09003 * 109.46894 * 119.99879 * 2 1 3 29 29 H 1.09001 * 109.47245 * 239.99518 * 2 1 3 30 30 H 0.96998 * 119.99772 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.46498 * 305.96764 * 14 13 3 32 32 H 1.09002 * 109.45879 * 65.94488 * 14 13 3 33 33 H 1.09000 * 109.49959 * 181.14295 * 15 14 13 34 34 H 1.09002 * 109.50545 * 61.04021 * 15 14 13 35 35 H 1.08990 * 109.67405 * 178.30638 * 17 16 15 36 36 H 1.09004 * 109.67172 * 298.84458 * 17 16 15 37 37 H 1.09000 * 109.39475 * 287.59373 * 18 17 16 38 38 H 1.09000 * 109.31397 * 167.82671 * 18 17 16 39 39 H 0.97003 * 118.48464 * 160.37395 * 19 18 17 40 40 H 1.09005 * 109.49391 * 182.73884 * 23 16 15 41 41 H 1.08996 * 109.49805 * 62.63110 * 23 16 15 42 42 H 1.09004 * 109.46172 * 294.05063 * 24 13 3 43 43 H 1.08997 * 109.46742 * 54.03685 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1291 1.4428 0.0460 5 6 1.5904 2.1342 -1.2611 6 1 0.9661 3.0135 -1.2015 7 6 1.9759 1.6445 -2.4910 8 7 2.7365 0.5742 -2.5636 9 14 1.4190 2.5024 -4.0541 10 1 0.5780 3.6748 -3.7027 11 1 2.6075 2.9569 -4.8196 12 1 0.6283 1.5571 -4.8828 13 7 1.5005 2.1527 1.1672 14 6 1.8055 1.4315 2.4095 15 6 1.1044 2.1181 3.5842 16 6 1.5796 3.5684 3.6786 17 6 0.8387 4.2799 4.8161 18 6 1.1133 3.5241 6.1196 19 7 2.5435 3.2579 6.2488 20 6 3.3863 3.2826 5.2109 21 8 4.5530 3.0041 5.4049 22 8 3.0030 3.6013 3.9643 23 6 1.3009 4.2847 2.3566 24 6 1.9963 3.5340 1.2182 25 1 -0.3633 0.5854 -0.8447 26 1 -0.3633 -1.0242 -0.0846 27 1 -0.3633 0.4390 0.9292 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 3.0074 0.2295 -3.4289 31 1 1.4545 0.4028 2.3278 32 1 2.8827 1.4355 2.5765 33 1 1.3472 1.5947 4.5090 34 1 0.0261 2.0980 3.4266 35 1 1.1984 5.3051 4.9035 36 1 -0.2320 4.2822 4.6117 37 1 0.5686 2.5799 6.1121 38 1 0.7797 4.1278 6.9635 39 1 2.8985 3.0541 7.1282 40 1 1.6836 5.3041 2.4075 41 1 0.2265 4.3074 2.1747 42 1 3.0725 3.5274 1.3914 43 1 1.7837 4.0315 0.2720 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173765.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:39 Heat of formation + Delta-G solvation = -77.325044 kcal Electronic energy + Delta-G solvation = -24155.178583 eV Core-core repulsion = 20814.158307 eV Total energy + Delta-G solvation = -3341.020275 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.29620 -38.54826 -36.81795 -35.61961 -34.20253 -32.20507 -31.14007 -30.37280 -28.97892 -26.31076 -24.84515 -23.64595 -22.81589 -22.63075 -20.62139 -19.33796 -18.93349 -17.61000 -17.13309 -16.24087 -16.03798 -15.65695 -15.03566 -14.62656 -14.54947 -14.19242 -13.81898 -13.64143 -13.56249 -13.12653 -12.62210 -12.34152 -12.26525 -11.83731 -11.78728 -11.54718 -11.31441 -11.14453 -10.93113 -10.86222 -10.81269 -10.55788 -10.37949 -10.07211 -9.89947 -9.82438 -9.58111 -9.39747 -9.35754 -8.76368 -8.37275 -7.12749 -5.97923 -4.01705 2.62685 2.90764 3.30688 3.39049 3.42009 3.44726 4.28045 4.37726 4.42185 4.67137 4.83247 4.89970 4.94054 5.19151 5.27386 5.33823 5.50193 5.61688 5.68848 5.79197 5.90655 5.96808 6.03932 6.13373 6.30379 6.45091 6.51204 6.58282 6.64525 6.67961 6.76690 6.79681 7.10764 7.32785 7.44537 7.66891 7.72905 7.76610 7.85627 8.15192 8.21181 8.36414 8.61759 9.03743 9.62223 11.08526 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027562 B = 0.004779 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.661672 B = 5857.820539 C = 5948.311824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.114 4.114 3 C 0.217 3.783 4 H -0.002 1.002 5 C -0.494 4.494 6 H 0.062 0.938 7 C 0.059 3.941 8 N -0.892 5.892 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.526 5.526 14 C 0.051 3.949 15 C -0.130 4.130 16 C 0.118 3.882 17 C -0.163 4.163 18 C 0.104 3.896 19 N -0.736 5.736 20 C 0.657 3.343 21 O -0.543 6.543 22 O -0.326 6.326 23 C -0.101 4.101 24 C 0.062 3.938 25 H 0.059 0.941 26 H 0.015 0.985 27 H 0.039 0.961 28 H 0.013 0.987 29 H 0.093 0.907 30 H 0.259 0.741 31 H 0.079 0.921 32 H 0.026 0.974 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.415 0.585 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.029 0.971 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.321 5.762 16.036 18.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.152 4.152 3 C 0.111 3.889 4 H 0.016 0.984 5 C -0.533 4.533 6 H 0.081 0.919 7 C -0.142 4.142 8 N -0.531 5.531 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.252 5.252 14 C -0.078 4.078 15 C -0.168 4.168 16 C 0.081 3.919 17 C -0.201 4.201 18 C -0.020 4.020 19 N -0.403 5.403 20 C 0.410 3.590 21 O -0.429 6.429 22 O -0.237 6.237 23 C -0.139 4.139 24 C -0.066 4.066 25 H 0.078 0.922 26 H 0.034 0.966 27 H 0.058 0.942 28 H 0.032 0.968 29 H 0.111 0.889 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.122 0.878 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.252 0.748 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.047 0.953 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.117 5.645 15.437 17.911 hybrid contribution 0.563 0.243 -0.257 0.665 sum -6.554 5.889 15.180 17.551 Atomic orbital electron populations 1.21474 0.97300 0.97605 1.01370 1.21610 0.95071 0.98327 1.00220 1.19250 0.92543 0.90607 0.86483 0.98450 1.21072 1.30774 1.11836 0.89579 0.91938 1.24908 0.95227 0.95102 0.98953 1.69886 1.36166 1.22557 1.24508 0.86528 0.78339 0.79578 0.83469 1.19784 1.21243 1.21144 1.62099 1.59801 1.01219 1.02065 1.22016 0.97275 0.98405 0.90054 1.22158 1.02230 0.93232 0.99200 1.22453 0.76293 0.97149 0.96022 1.22554 1.03294 1.00293 0.93941 1.21558 0.81047 1.00659 0.98721 1.45308 1.08834 1.75287 1.10901 1.17962 0.85009 0.76006 0.79979 1.91013 1.16598 1.52651 1.82593 1.86784 1.27930 1.82042 1.26984 1.21711 1.02333 0.98371 0.91489 1.21901 0.96247 0.90732 0.97717 0.92153 0.96607 0.94230 0.96813 0.88882 0.93085 0.90288 0.95612 0.92013 0.89238 0.89871 0.87798 0.90837 0.89866 0.74829 0.91221 0.89063 0.95315 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.55 9.41 37.16 0.35 -2.20 16 2 C -0.11 -2.69 4.95 -26.73 -0.13 -2.82 16 3 C 0.22 5.34 1.76 -68.86 -0.12 5.22 16 4 H 0.00 -0.06 8.14 -51.93 -0.42 -0.48 16 5 C -0.49 -12.95 6.64 -34.44 -0.23 -13.18 16 6 H 0.06 1.63 6.81 -52.49 -0.36 1.27 16 7 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 8 N -0.89 -25.17 11.30 55.43 0.63 -24.54 16 9 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.53 -10.71 3.77 -228.04 -0.86 -11.57 16 14 C 0.05 0.93 4.71 -3.82 -0.02 0.91 16 15 C -0.13 -1.78 4.47 -26.74 -0.12 -1.90 16 16 C 0.12 1.54 0.69 -90.57 -0.06 1.47 16 17 C -0.16 -1.40 5.12 -26.51 -0.14 -1.53 16 18 C 0.10 0.75 6.51 -4.20 -0.03 0.73 16 19 N -0.74 -7.66 5.43 -65.90 -0.36 -8.02 16 20 C 0.66 10.39 8.03 53.59 0.43 10.82 16 21 O -0.54 -10.77 17.95 -19.40 -0.35 -11.12 16 22 O -0.33 -5.44 8.89 -39.40 -0.35 -5.79 16 23 C -0.10 -1.42 5.13 -26.74 -0.14 -1.56 16 24 C 0.06 1.19 5.15 -3.82 -0.02 1.17 16 25 H 0.06 1.39 7.15 -51.93 -0.37 1.02 16 26 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.04 0.77 7.18 -51.93 -0.37 0.40 16 28 H 0.01 0.30 6.35 -51.93 -0.33 -0.03 16 29 H 0.09 2.48 6.01 -51.93 -0.31 2.17 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.08 1.46 5.58 -51.93 -0.29 1.17 16 32 H 0.03 0.53 7.80 -51.93 -0.41 0.13 16 33 H 0.06 0.77 6.38 -51.93 -0.33 0.44 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.47 7.11 -51.93 -0.37 0.10 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.41 3.49 8.84 -40.82 -0.36 3.13 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.03 0.61 7.80 -51.93 -0.41 0.20 16 43 H 0.09 1.81 6.39 -51.93 -0.33 1.48 16 LS Contribution 322.93 15.07 4.87 4.87 Total: -1.00 -31.75 322.93 -8.51 -40.27 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.75 Total: 1.33 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -0.32 Total: -1.37 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -0.59 Total: -44.14 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.70 Total: -16.91 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.75 -8.51 -40.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173765.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.057 kcal (2) G-P(sol) polarization free energy of solvation -31.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds