Wall clock time and date at job start Tue Mar 31 2020 06:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47192 * 2 1 4 4 H 1.09000 * 109.47444 * 303.20794 * 3 2 1 5 5 C 1.50700 * 109.47320 * 183.20904 * 3 2 1 6 6 H 1.08005 * 120.00290 * 240.00163 * 5 3 2 7 7 C 1.37878 * 120.00184 * 59.99656 * 5 3 2 8 8 N 1.31519 * 119.99923 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00281 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46905 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46930 * 119.99937 * 9 7 5 12 12 H 1.48494 * 109.47006 * 239.99765 * 9 7 5 13 13 N 1.46900 * 109.47407 * 63.20580 * 3 2 1 14 14 C 1.46847 * 110.99944 * 66.78975 * 13 3 2 15 15 C 1.53038 * 109.52486 * 185.83921 * 14 13 3 16 16 C 1.53113 * 109.27933 * 300.82173 * 15 14 13 17 17 N 1.46501 * 109.52407 * 177.55939 * 16 15 14 18 18 C 1.47096 * 125.55981 * 120.31487 * 17 16 15 19 19 C 1.54089 * 103.77431 * 179.97438 * 18 17 16 20 20 O 1.45696 * 104.01006 * 0.02562 * 19 18 17 21 21 C 1.33772 * 109.47756 * 359.75176 * 20 19 18 22 22 O 1.21514 * 123.07361 * 180.24012 * 21 20 19 23 23 C 1.53123 * 109.16143 * 57.65034 * 16 15 14 24 24 C 1.46845 * 111.00175 * 190.99888 * 13 3 2 25 25 H 1.08996 * 109.47125 * 64.77529 * 1 2 3 26 26 H 1.09001 * 109.47277 * 184.77959 * 1 2 3 27 27 H 1.09004 * 109.47403 * 304.77871 * 1 2 3 28 28 H 1.09001 * 109.47287 * 239.99597 * 2 1 3 29 29 H 1.09004 * 109.46830 * 119.99724 * 2 1 3 30 30 H 0.96996 * 120.00233 * 180.02562 * 8 7 5 31 31 H 1.09005 * 109.46192 * 305.86004 * 14 13 3 32 32 H 1.09000 * 109.46315 * 65.82009 * 14 13 3 33 33 H 1.09002 * 109.50112 * 60.76618 * 15 14 13 34 34 H 1.09003 * 109.50205 * 180.87803 * 15 14 13 35 35 H 1.09007 * 109.52418 * 297.75211 * 16 15 14 36 36 H 1.09003 * 110.56418 * 298.55494 * 18 17 16 37 37 H 1.09000 * 110.56385 * 61.40728 * 18 17 16 38 38 H 1.08998 * 110.51895 * 118.63384 * 19 18 17 39 39 H 1.09003 * 110.52137 * 241.22953 * 19 18 17 40 40 H 1.08998 * 109.50061 * 182.40334 * 23 16 15 41 41 H 1.08998 * 109.49524 * 62.29276 * 23 16 15 42 42 H 1.09007 * 109.46219 * 294.17758 * 24 13 3 43 43 H 1.09004 * 109.46190 * 54.14567 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6305 1.9727 -0.8598 5 6 3.5449 1.4432 -0.0795 6 1 4.1272 1.8960 0.7094 7 6 4.1785 0.8659 -1.1595 8 7 3.4695 0.3150 -2.1205 9 14 6.0439 0.8662 -1.2577 10 1 6.6025 1.5439 -0.0603 11 1 6.5370 -0.5335 -1.3101 12 1 6.4750 1.5890 -2.4812 13 7 1.6146 2.1123 1.2363 14 6 2.2763 1.5242 2.4079 15 6 1.7033 2.1448 3.6841 16 6 1.9277 3.6591 3.6545 17 7 1.3297 4.2660 4.8463 18 6 2.0525 5.0434 5.8646 19 6 0.9561 5.4345 6.8742 20 8 -0.2565 4.8422 6.3252 21 6 0.0343 4.2077 5.1840 22 8 -0.7995 3.6284 4.5163 23 6 1.2702 4.2403 2.3997 24 6 1.8557 3.5588 1.1608 25 1 -0.3633 0.4379 -0.9296 26 1 -0.3634 -1.0241 0.0856 27 1 -0.3634 0.5862 0.8441 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.9152 -0.0915 -2.8800 31 1 2.1054 0.4476 2.4192 32 1 3.3471 1.7212 2.3573 33 1 0.6350 1.9362 3.7423 34 1 2.2056 1.7193 4.5529 35 1 2.9973 3.8686 3.6355 36 1 2.8145 4.4299 6.3453 37 1 2.4995 5.9332 5.4212 38 1 1.1744 5.0159 7.8566 39 1 0.8613 6.5188 6.9345 40 1 1.4630 5.3119 2.3510 41 1 0.1951 4.0647 2.4378 42 1 2.9286 3.7464 1.1160 43 1 1.3794 3.9602 0.2663 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176077.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:43 Heat of formation + Delta-G solvation = -65.768575 kcal Electronic energy + Delta-G solvation = -23707.110803 eV Core-core repulsion = 20366.591654 eV Total energy + Delta-G solvation = -3340.519149 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.58629 -38.60994 -37.02639 -35.83161 -33.72307 -31.75313 -30.69337 -30.16350 -29.14308 -26.45130 -24.25435 -23.75541 -22.74516 -22.46510 -20.96934 -19.50602 -18.91100 -17.32154 -17.30222 -16.69334 -16.10445 -15.26957 -14.88380 -14.40187 -14.29795 -14.07425 -13.87567 -13.83278 -13.34653 -13.09376 -12.75402 -12.69419 -12.50802 -12.06963 -11.69881 -11.46490 -11.16699 -11.15266 -10.84667 -10.83533 -10.67390 -10.46233 -10.44146 -10.26973 -10.08349 -9.73424 -9.59888 -9.33877 -9.03550 -8.75994 -8.35721 -7.06939 -5.98261 -4.12058 2.44675 2.82684 3.24010 3.32997 3.34507 3.40445 3.97562 4.38245 4.41796 4.57699 4.93715 5.02067 5.09953 5.13985 5.25572 5.30058 5.38914 5.59455 5.80881 5.84081 6.04808 6.10826 6.26722 6.35645 6.41088 6.52773 6.56397 6.60866 6.71915 6.78309 6.79973 6.92619 7.19228 7.26198 7.41403 7.42475 7.63910 7.79331 8.01382 8.13522 8.18067 8.35252 8.50703 8.98694 9.55430 11.00670 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025293 B = 0.004663 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.779248 B = 6003.788440 C = 6694.215507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C 0.214 3.786 4 H 0.038 0.962 5 C -0.542 4.542 6 H 0.057 0.943 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.532 5.532 14 C 0.068 3.932 15 C -0.132 4.132 16 C 0.181 3.819 17 N -0.626 5.626 18 C 0.063 3.937 19 C 0.042 3.958 20 O -0.336 6.336 21 C 0.638 3.362 22 O -0.509 6.509 23 C -0.130 4.130 24 C 0.070 3.930 25 H 0.037 0.963 26 H 0.024 0.976 27 H 0.052 0.948 28 H 0.091 0.909 29 H 0.032 0.968 30 H 0.260 0.740 31 H 0.075 0.925 32 H 0.038 0.962 33 H 0.083 0.917 34 H 0.055 0.945 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.056 0.944 41 H 0.084 0.916 42 H 0.034 0.966 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.514 9.444 15.478 18.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.147 4.147 3 C 0.108 3.892 4 H 0.056 0.944 5 C -0.582 4.582 6 H 0.075 0.925 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.714 3.286 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.256 5.256 14 C -0.061 4.061 15 C -0.170 4.170 16 C 0.081 3.919 17 N -0.374 5.374 18 C -0.060 4.060 19 C -0.033 4.033 20 O -0.247 6.247 21 C 0.392 3.608 22 O -0.392 6.392 23 C -0.169 4.169 24 C -0.059 4.059 25 H 0.056 0.944 26 H 0.043 0.957 27 H 0.071 0.929 28 H 0.109 0.891 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.074 0.926 41 H 0.102 0.898 42 H 0.053 0.947 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.660 8.989 15.102 17.653 hybrid contribution 2.289 0.215 -0.121 2.302 sum 0.629 9.204 14.980 17.593 Atomic orbital electron populations 1.21729 0.98794 0.98530 1.00733 1.21575 0.92293 0.99069 1.01792 1.19270 0.92707 0.91200 0.86071 0.94395 1.21776 0.92758 1.37563 1.06061 0.92521 1.24912 0.97783 0.95101 0.95606 1.69890 1.34788 1.37840 1.09725 0.86645 0.86390 0.77707 0.77847 1.20052 1.21023 1.21076 1.62367 1.57261 1.01627 1.04395 1.21830 0.96271 0.99204 0.88755 1.22084 1.03611 0.92951 0.98378 1.21092 0.96401 0.93342 0.81091 1.48416 1.07440 1.55849 1.25698 1.22784 0.96050 0.97495 0.89713 1.24213 0.81109 1.00178 0.97817 1.87272 1.33741 1.66495 1.37149 1.18542 0.83328 0.78861 0.80074 1.91073 1.50794 1.45363 1.52014 1.22052 1.02745 0.98321 0.93755 1.21766 0.98354 0.90034 0.95795 0.94403 0.95701 0.92867 0.89116 0.94969 0.92963 0.90711 0.94402 0.89863 0.92603 0.89401 0.89245 0.89277 0.87949 0.87946 0.92555 0.89771 0.94743 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.85 37.16 0.37 -2.61 16 2 C -0.11 -2.59 5.14 -26.73 -0.14 -2.73 16 3 C 0.21 5.20 1.72 -68.87 -0.12 5.08 16 4 H 0.04 1.03 7.97 -51.93 -0.41 0.62 16 5 C -0.54 -14.08 7.24 -34.44 -0.25 -14.33 16 6 H 0.06 1.47 5.84 -52.48 -0.31 1.16 16 7 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 8 N -0.88 -24.57 11.30 55.43 0.63 -23.94 16 9 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.53 -11.15 3.89 -228.08 -0.89 -12.03 16 14 C 0.07 1.31 4.77 -3.83 -0.02 1.30 16 15 C -0.13 -2.15 5.42 -26.65 -0.14 -2.29 16 16 C 0.18 2.61 2.86 -67.81 -0.19 2.42 16 17 N -0.63 -7.92 2.85 -171.08 -0.49 -8.41 16 18 C 0.06 0.47 7.67 -3.15 -0.02 0.45 16 19 C 0.04 0.28 8.23 37.73 0.31 0.59 16 20 O -0.34 -4.29 11.09 -37.83 -0.42 -4.71 16 21 C 0.64 9.85 8.30 53.71 0.45 10.30 16 22 O -0.51 -10.03 14.98 -19.12 -0.29 -10.31 16 23 C -0.13 -2.09 5.42 -26.65 -0.14 -2.24 16 24 C 0.07 1.32 5.20 -3.84 -0.02 1.30 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 1.12 7.56 -51.93 -0.39 0.73 16 28 H 0.09 2.41 5.99 -51.93 -0.31 2.10 16 29 H 0.03 0.75 6.33 -51.93 -0.33 0.42 16 30 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.07 1.51 6.20 -51.93 -0.32 1.19 16 32 H 0.04 0.76 6.33 -51.93 -0.33 0.43 16 33 H 0.08 1.57 6.74 -51.93 -0.35 1.22 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 1.15 8.10 -51.92 -0.42 0.73 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.08 1.56 6.72 -51.93 -0.35 1.22 16 42 H 0.03 0.67 7.36 -51.92 -0.38 0.29 16 43 H 0.07 1.32 8.00 -51.93 -0.42 0.91 16 LS Contribution 328.69 15.07 4.95 4.95 Total: -1.00 -30.94 328.69 -8.38 -39.32 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.84 Total: 0.54 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -0.02 Total: -1.05 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: -0.75 Total: -44.39 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.71 Total: -15.03 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.94 -8.38 -39.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176077.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.450 kcal (2) G-P(sol) polarization free energy of solvation -30.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds