Wall clock time and date at job start Tue Mar 31 2020 06:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 119.99494 * 2 1 4 4 O 1.45198 * 109.46946 * 134.99985 * 3 2 1 5 5 C 1.34643 * 116.99878 * 179.97438 * 4 3 2 6 6 O 1.21508 * 119.99906 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00008 * 179.72406 * 5 4 3 8 8 C 1.47084 * 120.88016 * 359.97438 * 7 5 4 9 9 C 1.53690 * 108.27309 * 128.75847 * 8 7 5 10 10 N 1.46892 * 109.26125 * 54.08253 * 9 8 7 11 11 C 1.46899 * 111.00673 * 172.60341 * 10 9 8 12 12 H 1.09004 * 109.46665 * 65.43088 * 11 10 9 13 13 C 1.50692 * 109.47464 * 185.42707 * 11 10 9 14 14 H 1.08000 * 120.00581 * 0.02562 * 13 11 10 15 15 C 1.37881 * 120.00086 * 180.02562 * 13 11 10 16 16 N 1.31520 * 119.99909 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00166 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47075 * 59.99578 * 17 15 13 19 19 H 1.48502 * 109.47192 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.46845 * 299.99845 * 17 15 13 21 21 C 1.52995 * 109.47210 * 305.43220 * 11 10 9 22 22 C 1.53006 * 109.47169 * 302.05615 * 21 11 10 23 23 C 1.46900 * 111.27078 * 296.75990 * 10 9 8 24 24 C 1.47069 * 120.88190 * 180.27805 * 7 5 4 25 25 H 1.08008 * 119.99362 * 180.02562 * 1 2 3 26 26 H 1.07996 * 120.00248 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.00248 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47267 * 14.99934 * 3 2 1 29 29 H 1.09000 * 109.46530 * 254.99464 * 3 2 1 30 30 H 1.09000 * 109.62566 * 248.52603 * 8 7 5 31 31 H 1.08998 * 109.62843 * 9.10380 * 8 7 5 32 32 H 1.09000 * 109.65169 * 294.07741 * 9 8 7 33 33 H 1.09003 * 109.42082 * 173.95047 * 9 8 7 34 34 H 0.96997 * 119.99604 * 180.02562 * 16 15 13 35 35 H 1.09005 * 109.47234 * 62.05510 * 21 11 10 36 36 H 1.08999 * 109.47455 * 182.05711 * 21 11 10 37 37 H 1.09000 * 109.46827 * 304.76280 * 22 21 11 38 38 H 1.09002 * 109.46753 * 64.75870 * 22 21 11 39 39 H 1.08990 * 109.46902 * 184.76105 * 22 21 11 40 40 H 1.09003 * 109.49120 * 303.13889 * 23 10 9 41 41 H 1.08999 * 109.49728 * 183.06533 * 23 10 9 42 42 H 1.08999 * 109.63010 * 350.89233 * 24 7 5 43 43 H 1.09005 * 109.63453 * 111.47258 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1437 1.2404 0.9680 5 6 3.9194 2.3339 1.0924 6 8 3.6999 3.3153 0.4103 7 7 4.9362 2.3418 1.9770 8 6 5.2155 1.1668 2.8166 9 6 6.7060 0.8188 2.6779 10 7 7.5119 2.0075 2.9863 11 6 8.9420 1.6755 3.0371 12 1 9.2798 1.3715 2.0463 13 6 9.7227 2.8841 3.4850 14 1 9.2081 3.8066 3.7100 15 6 11.0942 2.8123 3.6077 16 7 11.7210 1.6891 3.3334 17 14 12.0619 4.3102 4.1637 18 1 11.6021 4.7235 5.5138 19 1 13.5077 3.9749 4.2137 20 1 11.8453 5.4233 3.2047 21 6 9.1647 0.5293 4.0257 22 6 8.6435 0.9372 5.4053 23 6 7.2563 3.0887 2.0252 24 6 5.7918 3.5277 2.1331 25 1 -0.5399 -0.9354 0.0004 26 1 -0.5400 0.9352 -0.0004 27 1 1.8500 -0.9352 0.0004 28 1 1.3854 2.1161 0.2660 29 1 2.4754 1.4868 -0.9927 30 1 4.9853 1.3972 3.8568 31 1 4.6089 0.3253 2.4821 32 1 6.9131 0.4934 1.6584 33 1 6.9575 0.0183 3.3736 34 1 12.6858 1.6385 3.4200 35 1 8.6294 -0.3560 3.6823 36 1 10.2298 0.3073 4.0908 37 1 9.1179 1.8694 5.7118 38 1 7.5635 1.0772 5.3588 39 1 8.8779 0.1555 6.1278 40 1 7.4557 2.7318 1.0148 41 1 7.9069 3.9345 2.2476 42 1 5.5665 4.2479 1.3465 43 1 5.6159 3.9804 3.1090 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255179880.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:49 Heat of formation + Delta-G solvation = -45.346492 kcal Electronic energy + Delta-G solvation = -23036.770023 eV Core-core repulsion = 19697.136442 eV Total energy + Delta-G solvation = -3339.633581 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.48973 -38.44150 -36.66462 -35.21318 -34.19951 -32.59629 -31.29856 -30.35699 -27.85401 -26.61331 -25.38664 -23.62493 -22.71833 -21.68525 -20.37836 -19.76700 -19.04456 -17.67521 -17.12828 -16.53420 -16.15555 -15.52753 -14.97325 -14.46447 -14.36863 -14.25635 -13.97930 -13.68792 -13.45019 -13.02535 -12.90102 -12.46383 -12.25810 -11.94171 -11.75878 -11.44213 -11.19840 -11.00516 -10.90862 -10.85752 -10.72463 -10.67200 -10.42824 -10.24120 -9.93104 -9.79240 -9.78150 -9.48852 -8.86989 -8.54704 -8.41588 -7.24553 -6.03776 -4.07969 1.64057 2.43514 2.93477 3.30379 3.35377 3.37857 3.96155 4.37602 4.59815 4.77301 4.83785 5.10911 5.21045 5.27385 5.31428 5.44663 5.45915 5.54781 5.66425 5.81326 5.89425 6.05016 6.18587 6.23408 6.26587 6.39035 6.41123 6.44891 6.53234 6.54358 6.68780 6.75612 7.06061 7.24380 7.34559 7.51287 7.60663 7.69642 7.79406 8.09918 8.28417 8.38707 8.52417 8.96625 9.56337 11.02498 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.032613 B = 0.003736 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.356315 B = 7492.390293 C = 7996.866932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.155 4.155 3 C 0.114 3.886 4 O -0.367 6.367 5 C 0.648 3.352 6 O -0.583 6.583 7 N -0.588 5.588 8 C 0.118 3.882 9 C 0.035 3.965 10 N -0.528 5.528 11 C 0.218 3.782 12 H -0.003 1.003 13 C -0.499 4.499 14 H 0.062 0.938 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.894 3.106 18 H -0.276 1.276 19 H -0.289 1.289 20 H -0.278 1.278 21 C -0.114 4.114 22 C -0.121 4.121 23 C 0.050 3.950 24 C 0.131 3.869 25 H 0.108 0.892 26 H 0.100 0.900 27 H 0.121 0.879 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.025 0.975 33 H 0.090 0.910 34 H 0.261 0.739 35 H 0.014 0.986 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.039 0.961 39 H 0.016 0.984 40 H 0.024 0.976 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.469 -3.528 -3.082 17.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.173 4.173 3 C 0.039 3.961 4 O -0.281 6.281 5 C 0.403 3.597 6 O -0.473 6.473 7 N -0.328 5.328 8 C -0.005 4.005 9 C -0.094 4.094 10 N -0.253 5.253 11 C 0.112 3.888 12 H 0.015 0.985 13 C -0.537 4.537 14 H 0.081 0.919 15 C -0.141 4.141 16 N -0.531 5.531 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.204 1.204 21 C -0.152 4.152 22 C -0.179 4.179 23 C -0.079 4.079 24 C 0.010 3.990 25 H 0.126 0.874 26 H 0.118 0.882 27 H 0.139 0.861 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.043 0.957 33 H 0.108 0.892 34 H 0.071 0.929 35 H 0.033 0.967 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.058 0.942 39 H 0.035 0.965 40 H 0.043 0.957 41 H 0.120 0.880 42 H 0.108 0.892 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.523 -3.165 -2.868 17.067 hybrid contribution 0.863 0.403 -0.598 1.124 sum -15.661 -2.762 -3.466 16.276 Atomic orbital electron populations 1.23882 0.95376 1.02562 0.99106 1.22728 0.95663 0.97871 1.01016 1.21908 0.86300 0.96362 0.91511 1.86238 1.42668 1.39677 1.59531 1.18013 0.80025 0.81265 0.80446 1.90956 1.73075 1.34942 1.48310 1.47131 1.29440 1.17794 1.38426 1.22009 0.96857 0.86786 0.94848 1.22579 0.91967 0.95367 0.99489 1.62092 1.10103 1.05902 1.47219 1.19265 0.80590 0.94836 0.94066 0.98499 1.20995 0.90957 0.96855 1.44921 0.91945 1.24901 0.97708 0.95955 0.95491 1.69864 1.08882 1.25244 1.49135 0.86623 0.78798 0.83046 0.79316 1.20204 1.21453 1.20357 1.21615 1.02855 0.95444 0.95286 1.21478 0.99781 1.00143 0.96459 1.22377 0.93852 0.97648 0.94050 1.21954 0.89022 0.85482 1.02540 0.87398 0.88193 0.86145 0.90768 0.90292 0.90629 0.89679 0.95686 0.89184 0.92910 0.96714 0.88851 0.92102 0.94166 0.96496 0.95730 0.88018 0.89199 0.90507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 14.31 29.01 0.42 -0.79 16 2 C -0.15 -1.35 9.90 -36.02 -0.36 -1.71 16 3 C 0.11 1.28 5.89 36.01 0.21 1.49 16 4 O -0.37 -5.19 8.88 -40.33 -0.36 -5.55 16 5 C 0.65 10.71 8.44 54.06 0.46 11.16 16 6 O -0.58 -10.90 15.58 -19.28 -0.30 -11.20 16 7 N -0.59 -9.44 3.00 -177.96 -0.53 -9.97 16 8 C 0.12 1.72 6.64 -3.36 -0.02 1.70 16 9 C 0.04 0.60 5.05 -3.47 -0.02 0.59 16 10 N -0.53 -10.47 3.76 -227.43 -0.85 -11.32 16 11 C 0.22 5.14 1.76 -68.87 -0.12 5.02 16 12 H 0.00 -0.07 8.14 -51.93 -0.42 -0.49 16 13 C -0.50 -12.75 6.60 -34.44 -0.23 -12.98 16 14 H 0.06 1.59 6.80 -52.49 -0.36 1.23 16 15 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 16 N -0.89 -24.52 11.31 55.43 0.63 -23.89 16 17 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 C -0.11 -2.57 4.96 -26.73 -0.13 -2.70 16 22 C -0.12 -2.51 9.43 37.16 0.35 -2.16 16 23 C 0.05 0.93 5.43 -3.69 -0.02 0.91 16 24 C 0.13 2.13 6.60 -3.59 -0.02 2.11 16 25 H 0.11 0.58 8.06 -52.48 -0.42 0.16 16 26 H 0.10 0.63 7.90 -52.49 -0.41 0.22 16 27 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 28 H 0.07 0.81 7.86 -51.93 -0.41 0.40 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.08 1.11 6.98 -51.93 -0.36 0.75 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 1.51 5.60 -51.93 -0.29 1.22 16 34 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.01 0.30 6.30 -51.93 -0.33 -0.03 16 36 H 0.09 2.40 6.02 -51.93 -0.31 2.08 16 37 H 0.06 1.39 7.13 -51.93 -0.37 1.02 16 38 H 0.04 0.77 7.28 -51.93 -0.38 0.39 16 39 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.10 2.00 6.34 -51.93 -0.33 1.68 16 42 H 0.09 1.45 7.06 -51.93 -0.37 1.09 16 43 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 340.38 15.07 5.13 5.13 Total: -1.00 -28.81 340.38 -7.75 -36.56 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -6.86 Total: 0.47 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 0.42 Total: 4.14 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: -0.76 Total: -45.19 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.66 Total: -16.75 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.81 -7.75 -36.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179880.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.786 kcal (2) G-P(sol) polarization free energy of solvation -28.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds