Wall clock time and date at job start Tue Mar 31 2020 06:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50693 * 120.00389 * 2 1 4 4 O 1.45193 * 109.47599 * 135.00205 * 3 2 1 5 5 C 1.34632 * 117.00616 * 179.97438 * 4 3 2 6 6 O 1.21508 * 119.99814 * 0.02562 * 5 4 3 7 7 N 1.34778 * 120.00585 * 179.97438 * 5 4 3 8 8 C 1.47075 * 120.88343 * 180.02562 * 7 5 4 9 9 C 1.53245 * 108.51840 * 231.16672 * 8 7 5 10 10 N 1.46904 * 109.33634 * 306.16663 * 9 8 7 11 11 C 1.46904 * 110.99876 * 187.25485 * 10 9 8 12 12 H 1.09001 * 109.47014 * 54.99941 * 11 10 9 13 13 C 1.50697 * 109.46891 * 295.00239 * 11 10 9 14 14 H 1.07991 * 120.00449 * 359.72239 * 13 11 10 15 15 C 1.37885 * 119.99686 * 180.02562 * 13 11 10 16 16 N 1.31516 * 119.99913 * 359.72095 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 179.72528 * 15 13 11 18 18 H 1.48498 * 109.47416 * 59.99812 * 17 15 13 19 19 H 1.48508 * 109.46609 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46903 * 299.99397 * 17 15 13 21 21 C 1.52999 * 109.47141 * 175.00152 * 11 10 9 22 22 C 1.53007 * 109.46852 * 295.00132 * 21 11 10 23 23 C 1.46898 * 111.26778 * 63.10689 * 10 9 8 24 24 C 1.47081 * 120.87531 * 359.97438 * 7 5 4 25 25 H 1.08001 * 119.99554 * 359.97438 * 1 2 3 26 26 H 1.07992 * 120.00680 * 180.02562 * 1 2 3 27 27 H 1.08007 * 119.99374 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47319 * 14.99567 * 3 2 1 29 29 H 1.09004 * 109.46886 * 255.00067 * 3 2 1 30 30 H 1.08999 * 109.63155 * 111.45519 * 8 7 5 31 31 H 1.08998 * 109.62888 * 350.87067 * 8 7 5 32 32 H 1.08997 * 109.49321 * 186.21306 * 9 8 7 33 33 H 1.08994 * 109.51829 * 66.13710 * 9 8 7 34 34 H 0.97000 * 119.99651 * 180.02562 * 16 15 13 35 35 H 1.08999 * 109.47377 * 54.99561 * 21 11 10 36 36 H 1.08991 * 109.46773 * 175.00331 * 21 11 10 37 37 H 1.09002 * 109.47338 * 59.99974 * 22 21 11 38 38 H 1.08996 * 109.46556 * 180.02562 * 22 21 11 39 39 H 1.09004 * 109.47079 * 299.99653 * 22 21 11 40 40 H 1.09001 * 109.49038 * 56.85783 * 23 10 9 41 41 H 1.08998 * 109.49058 * 176.93119 * 23 10 9 42 42 H 1.09003 * 109.62545 * 248.54178 * 24 7 5 43 43 H 1.08992 * 109.63329 * 9.12499 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1439 1.2402 0.9679 5 6 3.9197 2.3334 1.0923 6 8 3.6997 3.3152 0.4109 7 7 4.9397 2.3394 1.9732 8 6 5.7990 3.5234 2.1253 9 6 7.2618 3.0807 2.0131 10 7 7.5179 1.9997 2.9743 11 6 8.9474 1.6641 3.0206 12 1 9.5249 2.5632 3.2357 13 6 9.3741 1.0995 1.6901 14 1 8.6544 0.9958 0.8917 15 6 10.6821 0.7096 1.4942 16 7 11.5584 0.8356 2.4667 17 14 11.2092 0.0026 -0.1525 18 1 10.9699 1.0055 -1.2212 19 1 12.6543 -0.3365 -0.1056 20 1 10.4226 -1.2238 -0.4392 21 6 9.1923 0.6259 4.1174 22 6 8.8767 1.2417 5.4821 23 6 6.7081 0.8126 2.6694 24 6 5.2223 1.1625 2.8088 25 1 -0.5399 0.9354 0.0004 26 1 -0.5401 -0.9352 0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3857 2.1160 0.2659 29 1 2.4756 1.4866 -0.9927 30 1 5.6275 3.9773 3.1013 31 1 5.5730 4.2432 1.3387 32 1 7.9152 3.9250 2.2328 33 1 7.4575 2.7226 1.0024 34 1 12.4787 0.5616 2.3288 35 1 8.5483 -0.2375 3.9507 36 1 10.2356 0.3113 4.0933 37 1 7.8334 1.5564 5.5061 38 1 9.0516 0.5022 6.2634 39 1 9.5207 2.1052 5.6488 40 1 6.9111 0.4860 1.6495 41 1 6.9600 0.0121 3.3650 42 1 4.9955 1.3900 3.8504 43 1 4.6150 0.3215 2.4742 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255179881.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:53 Heat of formation + Delta-G solvation = -48.656908 kcal Electronic energy + Delta-G solvation = -23151.596479 eV Core-core repulsion = 19811.819347 eV Total energy + Delta-G solvation = -3339.777132 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.44183 -38.41595 -36.62401 -35.14381 -34.15588 -32.46910 -31.34428 -30.49129 -27.88814 -26.66008 -25.29062 -23.35517 -22.84136 -21.58563 -20.33409 -19.73873 -19.08970 -17.75047 -17.07375 -16.56637 -16.10053 -15.48747 -14.97583 -14.39904 -14.39753 -14.24335 -13.94738 -13.73598 -13.27116 -12.88905 -12.87242 -12.48682 -12.19927 -11.94638 -11.55014 -11.40379 -11.22615 -11.04365 -10.95655 -10.85089 -10.81291 -10.62169 -10.60836 -10.28825 -9.88500 -9.74942 -9.71968 -9.47714 -9.18724 -8.48886 -8.40116 -7.22773 -6.03587 -4.17136 1.68360 2.48078 2.98813 3.25428 3.30778 3.33923 4.01573 4.36242 4.64308 4.81526 4.91932 5.15929 5.20663 5.25163 5.40267 5.49939 5.51536 5.58826 5.78040 5.86198 5.97057 6.09913 6.22736 6.26660 6.29484 6.38762 6.43327 6.48457 6.62270 6.63534 6.69771 6.72045 7.04853 7.14126 7.25854 7.53084 7.56140 7.70789 7.89372 8.08363 8.22359 8.38756 8.43764 8.91823 9.50869 10.95695 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018296 B = 0.004466 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.054902 B = 6268.561003 C = 6841.247162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.154 4.154 3 C 0.114 3.886 4 O -0.366 6.366 5 C 0.649 3.351 6 O -0.584 6.584 7 N -0.586 5.586 8 C 0.132 3.868 9 C 0.049 3.951 10 N -0.533 5.533 11 C 0.215 3.785 12 H 0.041 0.959 13 C -0.546 4.546 14 H 0.054 0.946 15 C 0.070 3.930 16 N -0.884 5.884 17 Si 0.886 3.114 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.278 1.278 21 C -0.113 4.113 22 C -0.138 4.138 23 C 0.045 3.955 24 C 0.114 3.886 25 H 0.099 0.901 26 H 0.108 0.892 27 H 0.121 0.879 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.042 0.958 34 H 0.262 0.738 35 H 0.034 0.966 36 H 0.093 0.907 37 H 0.047 0.953 38 H 0.025 0.975 39 H 0.039 0.961 40 H 0.042 0.958 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.737 -0.646 0.029 15.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.172 4.172 3 C 0.039 3.961 4 O -0.280 6.280 5 C 0.403 3.597 6 O -0.474 6.474 7 N -0.326 5.326 8 C 0.011 3.989 9 C -0.080 4.080 10 N -0.257 5.257 11 C 0.109 3.891 12 H 0.059 0.941 13 C -0.585 4.585 14 H 0.072 0.928 15 C -0.132 4.132 16 N -0.522 5.522 17 Si 0.714 3.286 18 H -0.204 1.204 19 H -0.212 1.212 20 H -0.204 1.204 21 C -0.151 4.151 22 C -0.196 4.196 23 C -0.084 4.084 24 C -0.008 4.008 25 H 0.118 0.882 26 H 0.126 0.874 27 H 0.139 0.861 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.111 0.889 37 H 0.066 0.934 38 H 0.044 0.956 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.785 -0.232 0.306 15.789 hybrid contribution 0.669 -0.764 -1.857 2.116 sum -15.115 -0.995 -1.551 15.227 Atomic orbital electron populations 1.23870 0.95365 1.02522 0.99274 1.22738 0.95659 0.97924 1.00861 1.21902 0.86296 0.96321 0.91565 1.86238 1.42664 1.39653 1.59478 1.17997 0.80057 0.81255 0.80366 1.90950 1.73229 1.34977 1.48276 1.47066 1.28950 1.17740 1.38838 1.21910 0.89163 0.85640 1.02237 1.22260 0.93243 0.96295 0.96233 1.62467 1.09965 1.06755 1.46543 1.19291 0.81331 0.95062 0.93412 0.94115 1.21681 0.94976 1.43026 0.98802 0.92772 1.24887 0.96633 0.95344 0.96374 1.69858 1.03517 1.47386 1.31483 0.86752 0.77569 0.79624 0.84631 1.20365 1.21188 1.20369 1.21643 1.03317 0.97638 0.92528 1.21712 1.00616 0.99369 0.97862 1.22339 0.90339 0.94727 1.01016 1.22008 0.97650 0.86648 0.94516 0.88223 0.87419 0.86114 0.90801 0.90280 0.90872 0.89275 0.90073 0.93926 0.92777 0.94776 0.88901 0.93379 0.95564 0.94157 0.93991 0.89555 0.91040 0.89757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 14.31 29.01 0.42 -0.89 16 2 C -0.15 -1.44 9.90 -36.03 -0.36 -1.80 16 3 C 0.11 1.35 5.89 36.00 0.21 1.56 16 4 O -0.37 -5.44 8.88 -40.30 -0.36 -5.80 16 5 C 0.65 11.08 8.44 54.06 0.46 11.54 16 6 O -0.58 -11.19 15.58 -19.28 -0.30 -11.49 16 7 N -0.59 -9.64 3.01 -178.23 -0.54 -10.18 16 8 C 0.13 2.12 6.60 -3.60 -0.02 2.09 16 9 C 0.05 0.91 5.25 -3.69 -0.02 0.89 16 10 N -0.53 -10.45 4.07 -227.70 -0.93 -11.38 16 11 C 0.22 5.00 1.74 -68.86 -0.12 4.88 16 12 H 0.04 1.06 8.07 -51.93 -0.42 0.64 16 13 C -0.55 -14.08 7.22 -34.44 -0.25 -14.33 16 14 H 0.05 1.43 5.86 -52.49 -0.31 1.12 16 15 C 0.07 1.87 5.29 -17.82 -0.09 1.77 16 16 N -0.88 -24.17 11.30 55.43 0.63 -23.54 16 17 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C -0.11 -2.52 5.06 -26.73 -0.14 -2.65 16 22 C -0.14 -2.64 9.80 37.16 0.36 -2.28 16 23 C 0.04 0.82 4.95 -3.68 -0.02 0.80 16 24 C 0.11 1.74 6.62 -3.58 -0.02 1.72 16 25 H 0.10 0.67 7.90 -52.49 -0.41 0.26 16 26 H 0.11 0.63 8.06 -52.49 -0.42 0.21 16 27 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 28 H 0.07 0.84 7.86 -51.93 -0.41 0.43 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.09 1.44 7.06 -51.93 -0.37 1.07 16 32 H 0.08 1.47 8.05 -51.93 -0.42 1.05 16 33 H 0.04 0.89 7.02 -51.93 -0.36 0.53 16 34 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.03 0.74 6.03 -51.93 -0.31 0.43 16 36 H 0.09 2.36 5.96 -51.93 -0.31 2.05 16 37 H 0.05 0.87 7.75 -51.93 -0.40 0.47 16 38 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.04 0.87 6.69 -51.93 -0.35 0.52 16 41 H 0.09 1.56 5.87 -51.93 -0.31 1.26 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.08 1.18 6.98 -51.93 -0.36 0.82 16 LS Contribution 340.99 15.07 5.14 5.14 Total: -1.00 -28.69 340.99 -7.80 -36.49 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.83 Total: 1.62 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 0.41 Total: 3.30 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: -0.84 Total: -45.10 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.66 Total: -17.29 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.69 -7.80 -36.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179881.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.165 kcal (2) G-P(sol) polarization free energy of solvation -28.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds