Wall clock time and date at job start Tue Mar 31 2020 05:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.47105 * 2 1 4 4 C 1.50696 * 109.47154 * 239.99638 * 2 1 3 5 5 H 1.07999 * 119.99822 * 240.00491 * 4 2 1 6 6 C 1.37876 * 120.00339 * 60.00025 * 4 2 1 7 7 N 1.31514 * 119.99769 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00300 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47086 * 59.99960 * 8 6 4 10 10 H 1.48494 * 109.47285 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46819 * 300.00256 * 8 6 4 12 12 C 1.53002 * 109.46800 * 119.99598 * 2 1 3 13 13 N 1.46506 * 109.47035 * 299.99826 * 12 2 1 14 14 C 1.34777 * 119.99873 * 179.97438 * 13 12 2 15 15 O 1.21351 * 119.99901 * 0.02562 * 14 13 12 16 16 C 1.49446 * 120.00256 * 180.02562 * 14 13 12 17 17 O 1.21351 * 119.99843 * 0.02562 * 16 14 13 18 18 N 1.34777 * 120.00260 * 180.02562 * 16 14 13 19 19 C 1.46506 * 119.99880 * 180.02562 * 18 16 14 20 20 C 1.52999 * 109.46691 * 179.97438 * 19 18 16 21 21 C 1.53006 * 109.46626 * 179.97438 * 20 19 18 22 22 C 1.53003 * 117.49663 * 243.74292 * 21 20 19 23 23 C 1.53002 * 117.49643 * 175.08260 * 21 20 19 24 24 H 1.09002 * 109.47288 * 300.00564 * 1 2 3 25 25 H 1.09001 * 109.46630 * 60.00327 * 1 2 3 26 26 H 1.09000 * 109.47188 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46778 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46652 * 299.99654 * 3 2 1 29 29 H 1.09002 * 109.47508 * 59.99570 * 3 2 1 30 30 H 0.97000 * 120.00540 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.47185 * 180.02562 * 12 2 1 32 32 H 1.09000 * 109.47312 * 60.00000 * 12 2 1 33 33 H 0.96999 * 120.00080 * 0.02562 * 13 12 2 34 34 H 0.96999 * 120.00043 * 359.97438 * 18 16 14 35 35 H 1.08993 * 109.47068 * 59.99359 * 19 18 16 36 36 H 1.09000 * 109.46872 * 299.99570 * 19 18 16 37 37 H 1.08993 * 109.47839 * 59.99891 * 20 19 18 38 38 H 1.09000 * 109.47160 * 299.99453 * 20 19 18 39 39 H 1.09002 * 115.55153 * 29.41498 * 21 20 19 40 40 H 1.08998 * 117.49856 * 0.02562 * 22 21 20 41 41 H 1.09000 * 117.49861 * 145.02337 * 22 21 20 42 42 H 1.08993 * 117.50251 * 214.97577 * 23 21 20 43 43 H 1.09003 * 117.49715 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2396 -2.4827 7 7 0.9437 0.8300 -2.6035 8 14 2.3215 -1.1207 -4.0078 9 1 1.8259 -2.5206 -4.0075 10 1 1.8271 -0.4203 -5.2204 11 1 3.8065 -1.1213 -4.0080 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0304 2.4455 14 6 1.8768 -0.4911 3.6696 15 8 2.5744 -1.4778 3.7810 16 6 1.3782 0.2131 4.8898 17 8 0.6802 1.1995 4.7784 18 7 1.7037 -0.2473 6.1140 19 6 1.2144 0.4429 7.3101 20 6 1.7240 -0.2786 8.5593 21 6 1.2135 0.4425 9.8085 22 6 2.2546 1.0779 10.7324 23 6 1.5201 -0.1933 11.1660 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6768 1.9562 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 0.7096 1.1616 -3.4845 31 1 3.1300 -0.7208 1.2496 32 1 1.6767 -1.7488 1.2494 33 1 0.9937 0.7580 2.3564 34 1 2.2613 -1.0359 6.2030 35 1 0.1245 0.4421 7.3096 36 1 1.5770 1.4708 7.3103 37 1 2.8140 -0.2783 8.5600 38 1 1.3610 -1.3064 8.5589 39 1 0.2587 0.9564 9.6975 40 1 3.3030 0.9825 10.4501 41 1 1.9844 2.0095 11.2295 42 1 0.7671 -0.0973 11.9483 43 1 2.0857 -1.1250 11.1692 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261399198.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:58 Heat of formation + Delta-G solvation = -63.234054 kcal Electronic energy + Delta-G solvation = -21804.342640 eV Core-core repulsion = 18463.933396 eV Total energy + Delta-G solvation = -3340.409244 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.38798 -38.55710 -37.90832 -36.47700 -35.18360 -33.29729 -30.88511 -30.64085 -26.46346 -25.71831 -25.34171 -24.37436 -22.79062 -22.34701 -21.12753 -19.98487 -18.98269 -18.22229 -16.65981 -16.19058 -15.93262 -15.78166 -15.35224 -14.94349 -14.82578 -14.54426 -14.19575 -13.75421 -13.44165 -12.92981 -12.73676 -12.38838 -12.21902 -12.09169 -11.88219 -11.78241 -11.42932 -11.39216 -11.16996 -10.86042 -10.73987 -10.68971 -10.39413 -10.32556 -10.19995 -9.64804 -9.54079 -9.31607 -9.21832 -8.80765 -8.59646 -8.36622 -6.02213 -4.13126 1.66923 2.57721 3.29891 3.34584 3.37366 3.38259 3.48800 3.91356 4.27033 4.39165 4.45955 4.51416 4.74879 4.85308 4.92837 5.12841 5.21494 5.24207 5.25992 5.51743 5.59000 5.67921 5.73498 5.88590 6.11708 6.15472 6.23853 6.47327 6.63575 6.82958 6.85563 6.94464 7.00770 7.11213 7.33639 7.55451 7.67300 7.72452 7.98009 8.00375 8.13060 8.32938 8.41745 8.86812 9.52625 10.99148 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.053273 B = 0.002599 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.463643 B =10769.178186 C =11020.073170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.056 3.944 3 C -0.134 4.134 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.128 3.872 13 N -0.680 5.680 14 C 0.495 3.505 15 O -0.536 6.536 16 C 0.507 3.493 17 O -0.521 6.521 18 N -0.708 5.708 19 C 0.120 3.880 20 C -0.102 4.102 21 C -0.151 4.151 22 C -0.180 4.180 23 C -0.180 4.180 24 H 0.008 0.992 25 H 0.087 0.913 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.087 0.913 29 H 0.008 0.992 30 H 0.261 0.739 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.411 0.589 34 H 0.412 0.588 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.441 -0.170 21.940 21.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.055 3.945 3 C -0.191 4.191 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.006 3.994 13 N -0.332 5.332 14 C 0.275 3.725 15 O -0.415 6.415 16 C 0.288 3.712 17 O -0.396 6.396 18 N -0.362 5.362 19 C -0.003 4.003 20 C -0.140 4.140 21 C -0.170 4.170 22 C -0.217 4.217 23 C -0.217 4.217 24 H 0.027 0.973 25 H 0.106 0.894 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.106 0.894 29 H 0.027 0.973 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.248 0.752 34 H 0.248 0.752 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.127 0.873 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.341 -0.025 21.747 21.750 hybrid contribution 0.313 -0.437 -0.773 0.942 sum 0.653 -0.462 20.974 20.989 Atomic orbital electron populations 1.21860 0.97587 0.99285 1.00404 1.18384 0.92987 0.92875 0.90266 1.21858 0.98618 0.98254 1.00406 1.20904 1.31738 1.12180 0.89775 0.92409 1.24888 0.94839 0.94929 0.98878 1.69797 1.36447 1.22620 1.23404 0.86609 0.79199 0.79753 0.82135 1.20279 1.21332 1.20284 1.21948 0.98545 0.96037 0.82868 1.46226 1.50386 1.31380 1.05162 1.19968 0.82387 0.85217 0.84948 1.90720 1.37990 1.25992 1.86792 1.20478 0.81029 0.84684 0.85001 1.90755 1.36525 1.25431 1.86869 1.45754 1.53142 1.32356 1.04919 1.21423 0.99691 0.96645 0.82548 1.21384 1.01226 0.99508 0.91852 1.22172 1.00452 1.03730 0.90645 1.23085 0.97720 0.97142 1.03779 1.22990 1.03709 0.97361 0.97594 0.97258 0.89432 0.95345 0.95346 0.89427 0.97258 0.92881 0.91997 0.91993 0.75177 0.75181 0.90946 0.90864 0.90841 0.90564 0.87327 0.88641 0.88758 0.88728 0.88689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.08 37.16 0.30 -2.77 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -3.07 8.08 37.16 0.30 -2.77 16 4 C -0.51 -13.17 8.01 -34.44 -0.28 -13.45 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 7 N -0.88 -23.62 9.35 55.43 0.52 -23.10 16 8 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.13 2.69 4.50 -4.04 -0.02 2.67 16 13 N -0.68 -12.72 4.95 -60.73 -0.30 -13.03 16 14 C 0.50 8.74 7.89 -11.59 -0.09 8.65 16 15 O -0.54 -10.28 16.48 5.50 0.09 -10.19 16 16 C 0.51 7.83 7.89 -11.59 -0.09 7.74 16 17 O -0.52 -9.11 16.48 5.50 0.09 -9.02 16 18 N -0.71 -8.24 5.55 -60.73 -0.34 -8.58 16 19 C 0.12 1.12 5.63 -4.04 -0.02 1.10 16 20 C -0.10 -0.69 5.61 -26.73 -0.15 -0.84 16 21 C -0.15 -0.97 5.73 -90.61 -0.52 -1.49 16 22 C -0.18 -1.09 10.18 -26.69 -0.27 -1.36 16 23 C -0.18 -1.04 10.26 -26.69 -0.27 -1.31 16 24 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 25 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 29 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 30 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.41 7.58 5.63 -40.82 -0.23 7.35 16 34 H 0.41 4.27 7.94 -40.82 -0.32 3.95 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.48 7.87 -51.93 -0.41 0.07 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.11 0.68 8.08 -51.93 -0.42 0.26 16 40 H 0.10 0.56 8.03 -51.93 -0.42 0.14 16 41 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 352.08 15.07 5.31 5.31 Total: -1.00 -28.46 352.08 -7.85 -36.31 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -6.91 Total: 7.68 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -1.28 Total: -0.98 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: -0.12 Total: -44.71 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: 0.18 Total: -19.21 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.46 -7.85 -36.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261399198.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.924 kcal (2) G-P(sol) polarization free energy of solvation -28.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds