Wall clock time and date at job start Tue Mar 31 2020 05:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47088 * 2 1 4 4 C 1.50707 * 109.47060 * 240.00387 * 2 1 3 5 5 H 1.07996 * 119.99862 * 240.00207 * 4 2 1 6 6 C 1.37876 * 119.99895 * 59.99917 * 4 2 1 7 7 N 1.31520 * 120.00054 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99843 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47270 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47067 * 119.99631 * 8 6 4 11 11 H 1.48501 * 109.47153 * 239.99438 * 8 6 4 12 12 C 1.52999 * 109.47519 * 120.00494 * 2 1 3 13 13 N 1.46507 * 109.46823 * 299.99693 * 12 2 1 14 14 C 1.34777 * 119.99727 * 179.97438 * 13 12 2 15 15 O 1.21279 * 120.00153 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99487 * 180.02562 * 14 13 12 17 17 C 1.53001 * 109.46931 * 180.02562 * 16 14 13 18 18 N 1.46498 * 109.47601 * 179.97438 * 17 16 14 19 19 C 1.46768 * 124.34879 * 89.99607 * 18 17 16 20 20 C 1.54480 * 105.55098 * 197.08340 * 19 18 17 21 21 C 1.54631 * 101.76472 * 334.54015 * 20 19 18 22 22 C 1.34621 * 124.47196 * 270.02849 * 18 17 16 23 23 O 1.21286 * 124.90539 * 359.55259 * 22 18 17 24 24 H 1.08999 * 109.46964 * 299.99618 * 1 2 3 25 25 H 1.08999 * 109.47434 * 59.99446 * 1 2 3 26 26 H 1.09005 * 109.47337 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46928 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.47101 * 299.99983 * 3 2 1 29 29 H 1.08999 * 109.46906 * 60.00346 * 3 2 1 30 30 H 0.96995 * 119.99792 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.47155 * 180.02562 * 12 2 1 32 32 H 1.08997 * 109.46893 * 59.99390 * 12 2 1 33 33 H 0.96996 * 120.00086 * 0.02562 * 13 12 2 34 34 H 1.08994 * 109.47407 * 60.00659 * 16 14 13 35 35 H 1.08998 * 109.47731 * 300.00045 * 16 14 13 36 36 H 1.09002 * 109.47341 * 60.00111 * 17 16 14 37 37 H 1.08998 * 109.47560 * 299.99991 * 17 16 14 38 38 H 1.09002 * 110.24468 * 78.03845 * 19 18 17 39 39 H 1.09002 * 110.24463 * 316.12602 * 19 18 17 40 40 H 1.08995 * 110.97082 * 92.66028 * 20 19 18 41 41 H 1.09001 * 110.96924 * 216.42557 * 20 19 18 42 42 H 1.09000 * 110.48694 * 143.47575 * 21 20 19 43 43 H 1.08994 * 110.49106 * 266.12244 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9426 0.8298 -2.6034 8 14 2.3212 -1.1201 -4.0080 9 1 3.1464 -2.2868 -3.6040 10 1 1.1659 -1.5864 -4.8161 11 1 3.1464 -0.1871 -4.8166 12 6 2.0401 -0.7213 1.2491 13 7 1.5518 -0.0307 2.4454 14 6 1.8770 -0.4916 3.6695 15 8 2.5743 -1.4776 3.7807 16 6 1.3743 0.2185 4.8999 17 6 1.8844 -0.5027 6.1491 18 7 1.3963 0.1878 7.3454 19 6 0.1309 -0.1214 8.0217 20 6 -0.1682 1.0998 8.9192 21 6 1.2490 1.6706 9.1575 22 6 2.0483 1.1881 7.9671 23 8 3.1208 1.6374 7.6224 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 0.7080 1.1610 -3.4843 31 1 3.1301 -0.7209 1.2493 32 1 1.6767 -1.7489 1.2491 33 1 0.9938 0.7577 2.3565 34 1 0.2843 0.2184 4.8997 35 1 1.7375 1.2462 4.9004 36 1 2.9745 -0.5023 6.1493 37 1 1.5216 -1.5305 6.1490 38 1 0.2381 -1.0194 8.6301 39 1 -0.6652 -0.2554 7.2893 40 1 -0.7971 1.8219 8.3984 41 1 -0.6272 0.7907 9.8582 42 1 1.2222 2.7600 9.1828 43 1 1.6682 1.2768 10.0833 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275349902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:25 Heat of formation + Delta-G solvation = -85.451448 kcal Electronic energy + Delta-G solvation = -22258.839699 eV Core-core repulsion = 18917.467036 eV Total energy + Delta-G solvation = -3341.372662 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.58346 -39.26351 -36.64701 -36.38547 -33.89280 -33.28721 -31.03120 -29.94481 -27.84170 -25.87295 -25.73841 -25.19135 -23.60816 -22.18066 -20.09665 -19.48884 -18.78446 -17.40429 -16.82798 -16.30056 -15.84875 -15.68525 -15.17374 -14.99942 -14.60971 -14.02926 -13.88262 -13.67522 -13.43953 -13.15098 -12.90463 -12.76226 -12.48191 -12.20370 -12.18562 -11.84361 -11.40463 -11.38042 -11.20848 -11.16310 -10.88102 -10.66927 -10.40037 -10.21347 -9.97623 -9.64752 -9.62279 -9.30414 -8.91907 -8.77946 -8.46821 -8.32363 -6.03097 -4.13103 2.38450 2.73741 3.02331 3.26704 3.35338 3.40010 3.82268 4.05940 4.13074 4.39942 4.44930 4.70636 4.85118 4.94794 5.11769 5.15534 5.23282 5.23795 5.32858 5.43180 5.48629 5.59773 5.69738 5.88106 6.22357 6.32108 6.33413 6.49797 6.76939 6.81273 6.92080 6.92243 7.00862 7.02028 7.34333 7.54594 7.68741 7.97851 7.99875 8.03334 8.14164 8.37535 8.67381 8.88008 9.52884 10.98391 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.039277 B = 0.002908 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.720018 B = 9627.646929 C = 9713.168995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.131 3.869 13 N -0.716 5.716 14 C 0.509 3.491 15 O -0.555 6.555 16 C -0.158 4.158 17 C 0.143 3.857 18 N -0.621 5.621 19 C 0.099 3.901 20 C -0.132 4.132 21 C -0.155 4.155 22 C 0.513 3.487 23 O -0.529 6.529 24 H 0.006 0.994 25 H 0.086 0.914 26 H 0.026 0.974 27 H 0.027 0.973 28 H 0.086 0.914 29 H 0.006 0.994 30 H 0.259 0.741 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.398 0.602 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.306 1.611 21.141 22.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 C 0.009 3.991 13 N -0.366 5.366 14 C 0.293 3.707 15 O -0.434 6.434 16 C -0.200 4.200 17 C 0.021 3.979 18 N -0.356 5.356 19 C -0.024 4.024 20 C -0.170 4.170 21 C -0.196 4.196 22 C 0.300 3.700 23 O -0.405 6.405 24 H 0.025 0.975 25 H 0.104 0.896 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.104 0.896 29 H 0.025 0.975 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.233 0.767 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.109 0.891 42 H 0.120 0.880 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.282 1.205 20.798 21.492 hybrid contribution -0.096 -0.058 -0.997 1.003 sum -5.377 1.147 19.801 20.550 Atomic orbital electron populations 1.21828 0.97779 0.99131 1.00068 1.18363 0.92782 0.92777 0.90612 1.21833 0.98640 0.98337 1.00078 1.21033 1.31389 1.12083 0.89891 0.92376 1.24886 0.94863 0.94926 0.98882 1.69814 1.36733 1.22815 1.23127 0.86513 0.78636 0.79767 0.82962 1.19748 1.21059 1.21049 1.21728 0.98203 0.95754 0.83443 1.46330 1.52470 1.31730 1.06071 1.20327 0.80790 0.84734 0.84811 1.90676 1.38748 1.26912 1.87076 1.22015 1.02674 1.01691 0.93597 1.21093 1.00815 0.95181 0.80782 1.48433 1.22303 1.36511 1.28322 1.22116 0.86095 0.98203 0.96022 1.22604 0.96397 0.97307 1.00691 1.22336 0.95726 1.03362 0.98131 1.21038 0.85251 0.79271 0.84420 1.90756 1.21254 1.59377 1.69129 0.97546 0.89579 0.95459 0.95416 0.89580 0.97512 0.93060 0.92700 0.92701 0.76687 0.89011 0.88826 0.89069 0.89386 0.90921 0.90149 0.89854 0.89140 0.88041 0.87877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.99 8.08 37.16 0.30 -2.69 16 4 C -0.51 -13.30 8.01 -34.44 -0.28 -13.57 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.66 9.35 55.43 0.52 -23.14 16 8 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.13 2.80 4.50 -4.04 -0.02 2.78 16 13 N -0.72 -12.68 4.96 -60.29 -0.30 -12.98 16 14 C 0.51 8.62 7.83 -10.99 -0.09 8.53 16 15 O -0.55 -11.34 15.98 5.56 0.09 -11.25 16 16 C -0.16 -1.98 6.02 -27.88 -0.17 -2.14 16 17 C 0.14 1.74 5.23 -4.04 -0.02 1.72 16 18 N -0.62 -6.28 2.94 -172.35 -0.51 -6.79 16 19 C 0.10 0.60 7.34 -3.12 -0.02 0.58 16 20 C -0.13 -0.58 7.18 -25.10 -0.18 -0.76 16 21 C -0.16 -1.04 6.86 -26.74 -0.18 -1.23 16 22 C 0.51 5.98 8.03 -10.77 -0.09 5.90 16 23 O -0.53 -8.72 17.60 5.55 0.10 -8.63 16 24 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 25 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.09 2.16 6.07 -51.93 -0.32 1.85 16 29 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 30 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 31 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.40 6.37 6.16 -40.82 -0.25 6.12 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.09 1.34 7.89 -51.93 -0.41 0.93 16 37 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 346.28 15.07 5.22 5.22 Total: -1.00 -31.75 346.28 -7.55 -39.30 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -7.04 Total: 3.15 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -0.61 Total: -0.66 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: -0.29 Total: -42.91 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: 0.19 Total: -19.88 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.75 -7.55 -39.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275349902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.147 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds