Wall clock time and date at job start Tue Mar 31 2020 05:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47287 * 2 1 4 4 C 1.50701 * 109.47137 * 239.99853 * 2 1 3 5 5 H 1.07996 * 120.00309 * 240.00083 * 4 2 1 6 6 C 1.37876 * 119.99838 * 59.99869 * 4 2 1 7 7 N 1.31516 * 120.00034 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00054 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46736 * 90.00171 * 8 6 4 10 10 H 1.48497 * 109.47059 * 210.00163 * 8 6 4 11 11 H 1.48504 * 109.47124 * 330.00482 * 8 6 4 12 12 C 1.53002 * 109.47157 * 120.00014 * 2 1 3 13 13 N 1.46498 * 109.47164 * 299.99954 * 12 2 1 14 14 C 1.34774 * 120.00066 * 180.02562 * 13 12 2 15 15 O 1.21582 * 120.00175 * 359.97438 * 14 13 12 16 16 N 1.34786 * 119.99767 * 179.97438 * 14 13 12 17 17 C 1.46501 * 119.99498 * 179.97438 * 16 14 13 18 18 H 1.09002 * 110.34790 * 34.30000 * 17 16 14 19 19 C 1.51099 * 110.48225 * 271.94497 * 17 16 14 20 20 C 1.30524 * 111.10451 * 257.57880 * 19 17 16 21 21 C 1.51101 * 111.10408 * 0.02562 * 20 19 17 22 22 H 1.09005 * 110.38307 * 224.74805 * 21 20 19 23 23 C 1.52997 * 110.39038 * 102.37516 * 21 20 19 24 24 O 1.42903 * 109.47083 * 69.69489 * 23 21 20 25 25 C 1.54631 * 104.72722 * 343.56161 * 21 20 19 26 26 H 1.09004 * 109.47455 * 300.00110 * 1 2 3 27 27 H 1.09005 * 109.47398 * 59.99865 * 1 2 3 28 28 H 1.08997 * 109.47328 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47473 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47061 * 299.99886 * 3 2 1 31 31 H 1.08996 * 109.47484 * 59.99895 * 3 2 1 32 32 H 0.97000 * 120.00214 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.47198 * 180.02562 * 12 2 1 34 34 H 1.08997 * 109.47266 * 59.99639 * 12 2 1 35 35 H 0.96998 * 120.00081 * 359.97438 * 13 12 2 36 36 H 0.96995 * 119.99934 * 359.97438 * 16 14 13 37 37 H 1.07999 * 124.44955 * 77.55763 * 19 17 16 38 38 H 1.08010 * 124.44831 * 179.97438 * 20 19 17 39 39 H 1.08998 * 109.47464 * 189.69540 * 23 21 20 40 40 H 1.08998 * 109.46837 * 309.70198 * 23 21 20 41 41 H 0.96703 * 114.00273 * 180.02562 * 24 23 21 42 42 H 1.09005 * 111.03757 * 266.60468 * 25 21 20 43 43 H 1.08999 * 111.03762 * 142.66426 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 1.3447 -2.1616 -4.4123 10 1 2.4871 -0.1402 -5.1120 11 1 3.6308 -1.7567 -3.7119 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5767 -1.4793 3.7811 16 7 1.4288 0.1449 4.7700 17 6 1.7828 -0.3557 6.1005 18 1 2.7871 -0.7791 6.0914 19 6 0.7803 -1.3882 6.5609 20 6 -0.0548 -0.8797 7.4256 21 6 0.2511 0.5770 7.6856 22 1 0.2144 0.7878 8.7545 23 6 -0.7340 1.4716 6.9306 24 8 -2.0305 1.3562 7.5204 25 6 1.6858 0.7799 7.1455 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 0.7088 1.1613 -3.4844 33 1 3.1300 -0.7209 1.2495 34 1 1.6766 -1.7489 1.2493 35 1 0.9943 0.7582 2.3564 36 1 0.8715 0.9338 4.6809 37 1 0.7575 -2.4124 6.2191 38 1 -0.8594 -1.4279 7.8932 39 1 -0.4003 2.5077 6.9866 40 1 -0.7807 1.1607 5.8870 41 1 -2.7075 1.8972 7.0912 42 1 2.4241 0.6473 7.9365 43 1 1.7917 1.7566 6.6734 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001312841799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:40 Heat of formation + Delta-G solvation = -67.113888 kcal Electronic energy + Delta-G solvation = -22633.429634 eV Core-core repulsion = 19292.852148 eV Total energy + Delta-G solvation = -3340.577486 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.28229 -38.78361 -36.68800 -36.18226 -33.46866 -33.03220 -30.77133 -29.99045 -28.15860 -25.71875 -25.57786 -24.93808 -23.95518 -20.88047 -20.64019 -18.88282 -18.67578 -18.23308 -17.54608 -16.45857 -15.96516 -15.69897 -14.98768 -14.81017 -14.73873 -14.51553 -13.89692 -13.59454 -13.01168 -12.86217 -12.53661 -12.20509 -12.17045 -12.10516 -11.73589 -11.43751 -11.33690 -11.19138 -11.11582 -10.85689 -10.68169 -10.37755 -10.26975 -10.19854 -9.81842 -9.62208 -9.33887 -9.18566 -8.97734 -8.78188 -8.40747 -8.18349 -6.01477 -4.11253 2.04040 3.23138 3.29027 3.35952 3.40779 3.65268 3.85306 4.31922 4.39612 4.53649 4.73333 4.77947 4.95041 5.08304 5.18415 5.25406 5.36349 5.40921 5.58144 5.72469 5.74876 5.98446 6.22647 6.38185 6.39224 6.51507 6.65076 6.74756 6.81840 6.83079 6.92033 7.04175 7.11436 7.31379 7.33078 7.42983 7.56584 7.70607 8.01836 8.13295 8.39176 8.50144 8.88730 9.07089 9.54486 10.99958 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030596 B = 0.003389 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.926050 B = 8258.991476 C = 8691.733874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.055 3.945 3 C -0.129 4.129 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.151 3.849 13 N -0.734 5.734 14 C 0.698 3.302 15 O -0.598 6.598 16 N -0.743 5.743 17 C 0.182 3.818 18 H 0.096 0.904 19 C -0.167 4.167 20 C -0.145 4.145 21 C -0.071 4.071 22 H 0.086 0.914 23 C 0.085 3.915 24 O -0.572 6.572 25 C -0.127 4.127 26 H 0.005 0.995 27 H 0.085 0.915 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.085 0.915 31 H 0.005 0.995 32 H 0.259 0.741 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.392 0.608 36 H 0.389 0.611 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.380 0.620 42 H 0.092 0.908 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.571 4.372 18.284 19.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.028 3.972 13 N -0.388 5.388 14 C 0.398 3.602 15 O -0.477 6.477 16 N -0.400 5.400 17 C 0.077 3.923 18 H 0.114 0.886 19 C -0.186 4.186 20 C -0.164 4.164 21 C -0.089 4.089 22 H 0.105 0.895 23 C 0.008 3.992 24 O -0.378 6.378 25 C -0.165 4.165 26 H 0.024 0.976 27 H 0.103 0.897 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.103 0.897 31 H 0.024 0.976 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.227 0.773 36 H 0.223 0.777 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.227 0.773 42 H 0.110 0.890 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.638 3.158 18.570 19.020 hybrid contribution -0.620 0.588 -1.366 1.611 sum -3.257 3.746 17.203 17.905 Atomic orbital electron populations 1.21812 0.97801 0.99134 0.99920 1.18366 0.92776 0.92788 0.90599 1.21810 0.98567 0.98353 0.99934 1.20993 1.31406 1.12069 0.89872 0.92405 1.24877 0.94890 0.94913 0.98837 1.69805 1.36802 1.22748 1.23175 0.86571 0.79353 0.79376 0.82575 1.20725 1.21294 1.19880 1.21576 0.97854 0.95403 0.82398 1.45513 1.55609 1.33011 1.04640 1.16104 0.80430 0.83010 0.80680 1.90876 1.43160 1.27596 1.86020 1.45256 1.57379 1.32892 1.04452 1.20458 0.98809 0.92084 0.80953 0.88641 1.23706 0.97613 0.99822 0.97462 1.23162 0.98889 0.95117 0.99236 1.21022 0.93468 0.93541 1.00910 0.89545 1.22265 0.83209 0.97775 0.95990 1.86466 1.19419 1.71417 1.60456 1.22758 0.95994 0.99061 0.98644 0.97631 0.89677 0.95480 0.95459 0.89675 0.97615 0.93051 0.92974 0.92998 0.77332 0.77655 0.85607 0.85702 0.93376 0.93410 0.77339 0.88971 0.89869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.08 37.15 0.30 -2.61 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 4 C -0.50 -13.27 8.01 -34.44 -0.28 -13.54 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.56 9.35 55.43 0.52 -23.05 16 8 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 C 0.15 3.26 4.50 -4.04 -0.02 3.24 16 13 N -0.73 -13.24 4.96 -65.23 -0.32 -13.57 16 14 C 0.70 12.48 8.56 -86.91 -0.74 11.73 16 15 O -0.60 -13.03 16.02 5.29 0.08 -12.94 16 16 N -0.74 -9.75 5.09 -58.78 -0.30 -10.05 16 17 C 0.18 2.15 3.22 -68.03 -0.22 1.93 16 18 H 0.10 1.29 7.60 -51.93 -0.39 0.89 16 19 C -0.17 -1.98 10.41 -35.70 -0.37 -2.35 16 20 C -0.14 -1.50 9.97 -35.70 -0.36 -1.86 16 21 C -0.07 -0.62 3.17 -90.72 -0.29 -0.91 16 22 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 23 C 0.09 0.70 6.31 37.16 0.23 0.93 16 24 O -0.57 -5.06 13.54 -35.23 -0.48 -5.54 16 25 C -0.13 -1.05 6.31 -25.02 -0.16 -1.21 16 26 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 27 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.08 2.11 6.07 -51.93 -0.32 1.80 16 31 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 32 H 0.26 6.66 8.31 -40.82 -0.34 6.33 16 33 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.39 6.32 6.18 -40.82 -0.25 6.07 16 36 H 0.39 4.14 7.29 -40.82 -0.30 3.84 16 37 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 38 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 39 H 0.05 0.32 8.10 -51.93 -0.42 -0.11 16 40 H 0.05 0.41 6.84 -51.93 -0.36 0.06 16 41 H 0.38 1.79 9.12 45.56 0.42 2.20 16 42 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.60 7.77 -51.93 -0.40 0.20 16 LS Contribution 341.89 15.07 5.15 5.15 Total: -1.00 -30.74 341.89 -8.11 -38.84 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -5.98 Total: 9.80 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -1.77 Total: -4.38 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -0.10 Total: -46.66 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.39 Total: -18.49 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.74 -8.11 -38.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001312841799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.270 kcal (2) G-P(sol) polarization free energy of solvation -30.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds