Wall clock time and date at job start Tue Mar 31 2020 05:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47273 * 2 1 4 4 C 1.50696 * 109.47435 * 120.00023 * 2 1 3 5 5 O 1.21289 * 119.99892 * 359.97438 * 4 2 1 6 6 N 1.34781 * 120.00479 * 179.97438 * 4 2 1 7 7 C 1.46497 * 119.99977 * 179.97438 * 6 4 2 8 8 C 1.53003 * 109.46780 * 180.02562 * 7 6 4 9 9 H 1.08999 * 109.49739 * 54.93686 * 8 7 6 10 10 C 1.53043 * 109.49425 * 175.00054 * 8 7 6 11 11 C 1.53048 * 109.53518 * 181.34845 * 10 8 7 12 12 C 1.53187 * 109.31433 * 298.63602 * 11 10 8 13 13 N 1.46928 * 108.77730 * 54.63380 * 12 11 10 14 14 C 1.34772 * 120.63451 * 126.36837 * 13 12 11 15 15 O 1.21680 * 120.00451 * 185.24293 * 14 13 12 16 16 C 1.46374 * 119.99550 * 5.23840 * 14 13 12 17 17 H 1.08000 * 120.00375 * 354.99292 * 16 14 13 18 18 C 1.40053 * 120.00152 * 175.27090 * 16 14 13 19 19 N 1.30672 * 119.99407 * 359.72012 * 18 16 14 20 20 Si 1.86794 * 120.00335 * 179.72566 * 18 16 14 21 21 H 1.48499 * 109.47203 * 60.00070 * 20 18 16 22 22 H 1.48499 * 109.47094 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47281 * 299.99902 * 20 18 16 24 24 C 1.46926 * 118.73872 * 306.64722 * 13 12 11 25 25 H 1.09000 * 109.47597 * 299.99833 * 1 2 3 26 26 H 1.08997 * 109.47134 * 59.99943 * 1 2 3 27 27 H 1.09007 * 109.47465 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47410 * 239.99802 * 2 1 3 29 29 H 1.09002 * 109.47396 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.47000 * 300.00104 * 3 2 1 31 31 H 1.09000 * 109.47372 * 59.99866 * 3 2 1 32 32 H 0.96995 * 119.99284 * 0.02562 * 6 4 2 33 33 H 1.08996 * 109.47473 * 60.00410 * 7 6 4 34 34 H 1.09000 * 109.47059 * 299.99929 * 7 6 4 35 35 H 1.08991 * 109.46386 * 61.33270 * 10 8 7 36 36 H 1.08998 * 109.44872 * 301.35728 * 10 8 7 37 37 H 1.08994 * 109.49609 * 178.68114 * 11 10 8 38 38 H 1.09001 * 109.49562 * 58.58725 * 11 10 8 39 39 H 1.08997 * 109.58461 * 294.85150 * 12 11 10 40 40 H 1.08999 * 109.70811 * 174.49180 * 12 11 10 41 41 H 0.97001 * 119.99802 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.59077 * 173.14115 * 24 13 12 43 43 H 1.09004 * 109.58305 * 293.56850 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.2442 -1.1709 2.0290 6 7 3.3574 -0.8340 1.4435 7 6 3.8457 -1.5241 2.6399 8 6 5.3758 -1.5242 2.6398 9 1 5.7396 -0.5008 2.5486 10 6 5.8865 -2.1334 3.9476 11 6 7.4166 -2.1032 3.9629 12 6 7.9516 -2.9414 2.7976 13 7 7.3510 -2.4531 1.5488 14 6 8.1275 -2.1005 0.5052 15 8 7.6254 -1.6083 -0.4879 16 6 9.5749 -2.3095 0.5666 17 1 10.0303 -2.6705 1.4769 18 6 10.3700 -2.0359 -0.5534 19 7 9.8190 -1.5992 -1.6549 20 14 12.2181 -2.2954 -0.4728 21 1 12.5051 -3.7203 -0.1686 22 1 12.8258 -1.9366 -1.7794 23 1 12.7926 -1.4361 0.5934 24 6 5.8879 -2.3505 1.4615 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.9877 -0.4653 0.8049 33 1 3.4820 -2.5516 2.6406 34 1 3.4828 -1.0096 3.5297 35 1 5.5429 -3.1647 4.0263 36 1 5.5035 -1.5576 4.7901 37 1 7.7792 -2.5157 4.9044 38 1 7.7613 -1.0743 3.8593 39 1 7.6842 -3.9875 2.9470 40 1 9.0360 -2.8456 2.7434 41 1 10.3697 -1.4094 -2.4305 42 1 5.6109 -1.8626 0.5270 43 1 5.4488 -3.3475 1.4997 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320510095.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:07 Heat of formation + Delta-G solvation = -98.019967 kcal Electronic energy + Delta-G solvation = -22793.188018 eV Core-core repulsion = 19451.270343 eV Total energy + Delta-G solvation = -3341.917674 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.93927 -38.71336 -36.27841 -34.59147 -34.49937 -32.62196 -31.81811 -30.67307 -27.33503 -26.92759 -25.66625 -24.23187 -23.15279 -21.40115 -20.58674 -19.59516 -18.93165 -17.16543 -16.48209 -15.88915 -15.78288 -15.59202 -14.84859 -14.49576 -14.07929 -13.99296 -13.78762 -13.67852 -13.11440 -12.99612 -12.70897 -12.44446 -12.36855 -12.32895 -12.02206 -11.71400 -11.53152 -11.26126 -11.16721 -11.13093 -11.00692 -10.73291 -10.71634 -10.49743 -10.28724 -10.08638 -9.88053 -9.62780 -8.96301 -8.89316 -7.64318 -7.26942 -6.24840 -4.69686 2.71459 3.11775 3.17279 3.18502 3.27968 4.03899 4.44431 4.51624 4.64102 4.81014 4.87375 4.96753 5.06066 5.12660 5.31531 5.41680 5.48808 5.60616 5.63225 5.66777 5.71589 5.72938 5.83957 5.86681 5.94619 5.95968 6.03980 6.09426 6.13151 6.18133 6.36964 6.42048 6.47798 6.51237 6.57590 6.76312 7.40911 7.56061 7.59679 8.08676 8.29442 8.30314 8.97299 9.37875 10.51943 10.70457 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020770 B = 0.004096 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.758795 B = 6833.473027 C = 7916.329466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.118 4.118 3 C -0.145 4.145 4 C 0.516 3.484 5 O -0.549 6.549 6 N -0.726 5.726 7 C 0.128 3.872 8 C -0.116 4.116 9 H 0.078 0.922 10 C -0.105 4.105 11 C -0.134 4.134 12 C 0.120 3.880 13 N -0.642 5.642 14 C 0.560 3.440 15 O -0.580 6.580 16 C -0.545 4.545 17 H 0.073 0.927 18 C 0.088 3.912 19 N -0.768 5.768 20 Si 0.906 3.094 21 H -0.268 1.268 22 H -0.280 1.280 23 H -0.268 1.268 24 C 0.127 3.873 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.099 0.901 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.406 0.594 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.041 0.959 40 H 0.092 0.908 41 H 0.269 0.731 42 H 0.081 0.919 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.855 2.340 6.776 12.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.139 4.139 3 C -0.202 4.202 4 C 0.302 3.698 5 O -0.427 6.427 6 N -0.378 5.378 7 C 0.004 3.996 8 C -0.136 4.136 9 H 0.096 0.904 10 C -0.143 4.143 11 C -0.173 4.173 12 C -0.004 4.004 13 N -0.379 5.379 14 C 0.366 3.634 15 O -0.463 6.463 16 C -0.581 4.581 17 H 0.090 0.910 18 C -0.132 4.132 19 N -0.396 5.396 20 Si 0.731 3.269 21 H -0.192 1.192 22 H -0.205 1.205 23 H -0.192 1.192 24 C 0.002 3.998 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.117 0.883 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.241 0.759 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.111 0.889 41 H 0.080 0.920 42 H 0.100 0.900 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.650 2.333 6.582 12.735 hybrid contribution 1.307 -0.029 -0.135 1.315 sum -9.343 2.305 6.447 11.583 Atomic orbital electron populations 1.21590 0.92661 1.02678 1.01865 1.21321 0.98200 0.97455 0.96942 1.21793 1.01645 0.94091 1.02713 1.20688 0.82149 0.79385 0.87553 1.90667 1.55481 1.49207 1.47378 1.46137 1.07223 1.58544 1.25874 1.21374 0.93605 0.97272 0.87328 1.21759 0.92860 1.01485 0.97448 0.90410 1.21420 0.96314 1.00696 0.95899 1.21944 0.95032 1.01536 0.98771 1.21429 0.99684 0.95414 0.83869 1.48161 1.03852 1.70955 1.14979 1.18233 0.87278 0.77441 0.80468 1.90574 1.75204 1.48307 1.32167 1.20956 0.90438 1.47401 0.99350 0.90953 1.25722 0.99990 0.92732 0.94728 1.69999 1.36401 1.31616 1.01610 0.86456 0.82915 0.79473 0.78085 1.19246 1.20540 1.19243 1.21044 0.83597 0.97668 0.97443 0.92101 0.92168 0.92062 0.88304 0.91802 0.91395 0.92216 0.75869 0.91540 0.91712 0.91957 0.92345 0.91752 0.91743 0.94041 0.88946 0.92032 0.90017 0.93988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 8.48 37.15 0.32 -1.01 16 2 C -0.12 -1.28 3.26 -91.78 -0.30 -1.58 16 3 C -0.14 -1.36 9.09 37.15 0.34 -1.03 16 4 C 0.52 7.20 7.15 -10.99 -0.08 7.12 16 5 O -0.55 -9.44 15.98 5.55 0.09 -9.35 16 6 N -0.73 -9.73 5.22 -60.29 -0.31 -10.05 16 7 C 0.13 1.74 5.07 -4.04 -0.02 1.72 16 8 C -0.12 -1.69 2.36 -90.72 -0.21 -1.91 16 9 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 10 C -0.11 -1.38 5.17 -26.68 -0.14 -1.51 16 11 C -0.13 -1.92 6.08 -26.61 -0.16 -2.08 16 12 C 0.12 2.14 6.32 -3.71 -0.02 2.12 16 13 N -0.64 -13.96 2.98 -174.70 -0.52 -14.48 16 14 C 0.56 15.37 7.62 -12.99 -0.10 15.27 16 15 O -0.58 -17.98 14.45 5.21 0.08 -17.90 16 16 C -0.54 -14.82 8.86 -35.63 -0.32 -15.14 16 17 H 0.07 1.79 5.69 -52.49 -0.30 1.49 16 18 C 0.09 2.39 5.50 -17.36 -0.10 2.29 16 19 N -0.77 -22.38 11.84 55.55 0.66 -21.72 16 20 Si 0.91 19.56 29.56 -169.99 -5.02 14.53 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 24 C 0.13 2.35 5.50 -3.93 -0.02 2.33 16 25 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 28 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.61 7.57 -51.93 -0.39 0.22 16 30 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.41 5.28 7.11 -40.82 -0.29 4.98 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.74 5.37 -51.93 -0.28 1.46 16 41 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 42 H 0.08 1.67 6.19 -51.93 -0.32 1.35 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 344.07 15.07 5.19 5.19 Total: -1.00 -33.90 344.07 -7.72 -41.62 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -7.05 Total: 5.57 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -0.81 Total: 6.59 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: -0.18 Total: -46.24 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: 0.16 Total: -27.26 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.90 -7.72 -41.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320510095.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.400 kcal (2) G-P(sol) polarization free energy of solvation -33.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds