Wall clock time and date at job start Tue Mar 31 2020 05:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47303 * 2 1 4 4 C 1.50696 * 109.47202 * 120.00197 * 2 1 3 5 5 O 1.21289 * 120.00082 * 359.97438 * 4 2 1 6 6 N 1.34781 * 120.00377 * 179.97438 * 4 2 1 7 7 C 1.46496 * 120.00088 * 179.97438 * 6 4 2 8 8 C 1.53007 * 109.46760 * 180.02562 * 7 6 4 9 9 H 1.08998 * 109.52221 * 305.08007 * 8 7 6 10 10 C 1.53038 * 109.49497 * 184.99939 * 8 7 6 11 11 C 1.53038 * 109.53648 * 178.68115 * 10 8 7 12 12 C 1.53188 * 109.31320 * 61.36783 * 11 10 8 13 13 N 1.46923 * 108.77316 * 305.36477 * 12 11 10 14 14 C 1.34784 * 120.63065 * 233.58365 * 13 12 11 15 15 O 1.21685 * 120.00158 * 185.27152 * 14 13 12 16 16 C 1.46371 * 119.99675 * 5.27123 * 14 13 12 17 17 H 1.08001 * 120.00601 * 354.27932 * 16 14 13 18 18 C 1.40053 * 119.99979 * 174.00677 * 16 14 13 19 19 N 1.30673 * 119.99764 * 0.27229 * 18 16 14 20 20 Si 1.86801 * 120.00232 * 180.27655 * 18 16 14 21 21 H 1.48500 * 109.47020 * 89.99800 * 20 18 16 22 22 H 1.48501 * 109.46629 * 209.99810 * 20 18 16 23 23 H 1.48497 * 109.47042 * 329.99654 * 20 18 16 24 24 C 1.46927 * 118.74054 * 53.85933 * 13 12 11 25 25 H 1.09004 * 109.47336 * 299.99800 * 1 2 3 26 26 H 1.08998 * 109.47323 * 59.99700 * 1 2 3 27 27 H 1.08999 * 109.47224 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46916 * 239.99995 * 2 1 3 29 29 H 1.09001 * 109.47438 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47175 * 300.00390 * 3 2 1 31 31 H 1.09000 * 109.47139 * 60.00131 * 3 2 1 32 32 H 0.97002 * 119.99391 * 0.02562 * 6 4 2 33 33 H 1.08999 * 109.47446 * 59.99854 * 7 6 4 34 34 H 1.09000 * 109.47290 * 299.99772 * 7 6 4 35 35 H 1.09003 * 109.46006 * 58.66214 * 10 8 7 36 36 H 1.08998 * 109.45257 * 298.70011 * 10 8 7 37 37 H 1.09002 * 109.50004 * 301.41109 * 11 10 8 38 38 H 1.09006 * 109.49935 * 181.31672 * 11 10 8 39 39 H 1.09000 * 109.58811 * 185.57598 * 12 11 10 40 40 H 1.08995 * 109.70724 * 65.21928 * 12 11 10 41 41 H 0.96997 * 120.00128 * 180.02562 * 19 18 16 42 42 H 1.09005 * 109.58645 * 65.92875 * 24 13 12 43 43 H 1.09000 * 109.58658 * 186.34857 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.2442 -1.1710 2.0290 6 7 3.3574 -0.8341 1.4435 7 6 3.8457 -1.5242 2.6399 8 6 5.3758 -1.5243 2.6398 9 1 5.7399 -1.9576 1.7083 10 6 5.8865 -2.3513 3.8219 11 6 7.4165 -2.3793 3.8037 12 6 7.9511 -0.9508 3.9463 13 7 7.3504 -0.1144 2.8983 14 6 8.1270 0.6135 2.0714 15 8 7.6169 1.3753 1.2712 16 6 9.5838 0.4877 2.1360 17 1 10.0401 -0.1167 2.9060 18 6 10.3860 1.1466 1.1959 19 7 9.8340 1.8780 0.2642 20 14 12.2449 0.9799 1.2736 21 1 12.6722 -0.1828 0.4546 22 1 12.8752 2.2162 0.7449 23 1 12.6649 0.7739 2.6829 24 6 5.8869 -0.0818 2.7727 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.9877 -0.4654 0.8050 33 1 3.4819 -2.5517 2.6406 34 1 3.4828 -1.0097 3.5297 35 1 5.5038 -3.3691 3.7453 36 1 5.5425 -1.9032 4.7540 37 1 7.7615 -2.8046 2.8613 38 1 7.7791 -2.9878 4.6323 39 1 9.0354 -0.9536 3.8349 40 1 7.6856 -0.5551 4.9265 41 1 10.3894 2.3341 -0.3872 42 1 5.4543 0.3819 3.6593 43 1 5.6088 0.4891 1.8868 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320510096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:10 Heat of formation + Delta-G solvation = -97.882887 kcal Electronic energy + Delta-G solvation = -22859.137237 eV Core-core repulsion = 19517.225506 eV Total energy + Delta-G solvation = -3341.911730 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.92835 -38.68755 -36.27069 -34.58694 -34.47967 -32.62682 -31.80714 -30.64639 -27.31864 -26.90027 -25.65555 -24.21542 -23.15016 -21.39081 -20.59082 -19.59345 -18.90610 -17.17933 -16.48527 -15.89457 -15.80847 -15.51772 -14.83893 -14.49563 -14.06123 -13.99497 -13.77793 -13.63548 -13.23978 -12.89301 -12.67561 -12.46570 -12.35463 -12.24262 -12.01172 -11.63146 -11.60816 -11.22807 -11.15781 -11.12502 -11.02113 -10.72697 -10.71425 -10.50076 -10.26792 -10.08963 -9.86296 -9.61977 -8.96054 -8.90415 -7.64106 -7.27128 -6.25391 -4.69738 2.71519 3.09668 3.17229 3.20003 3.28450 4.03591 4.46011 4.49884 4.65501 4.82972 4.90297 4.97426 5.05560 5.13749 5.32083 5.42807 5.53114 5.61563 5.66368 5.70176 5.73321 5.74361 5.84727 5.88102 5.94857 5.95644 6.09273 6.11550 6.14635 6.18607 6.37717 6.41143 6.47559 6.51986 6.57832 6.77027 7.41013 7.56096 7.59609 8.08888 8.29626 8.30188 8.97256 9.37680 10.51613 10.70124 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020350 B = 0.004240 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.616372 B = 6602.046920 C = 7762.597667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.116 4.116 3 C -0.147 4.147 4 C 0.516 3.484 5 O -0.549 6.549 6 N -0.726 5.726 7 C 0.128 3.872 8 C -0.116 4.116 9 H 0.078 0.922 10 C -0.105 4.105 11 C -0.134 4.134 12 C 0.120 3.880 13 N -0.642 5.642 14 C 0.559 3.441 15 O -0.579 6.579 16 C -0.544 4.544 17 H 0.073 0.927 18 C 0.088 3.912 19 N -0.768 5.768 20 Si 0.906 3.094 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.264 1.264 24 C 0.128 3.872 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.406 0.594 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.093 0.907 40 H 0.040 0.960 41 H 0.268 0.732 42 H 0.042 0.958 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.841 -6.244 1.849 11.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.138 4.138 3 C -0.204 4.204 4 C 0.302 3.698 5 O -0.427 6.427 6 N -0.378 5.378 7 C 0.004 3.996 8 C -0.136 4.136 9 H 0.097 0.903 10 C -0.143 4.143 11 C -0.172 4.172 12 C -0.005 4.005 13 N -0.380 5.380 14 C 0.366 3.634 15 O -0.462 6.462 16 C -0.581 4.581 17 H 0.091 0.909 18 C -0.132 4.132 19 N -0.397 5.397 20 Si 0.730 3.270 21 H -0.197 1.197 22 H -0.204 1.204 23 H -0.189 1.189 24 C 0.004 3.996 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.241 0.759 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.111 0.889 40 H 0.059 0.941 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.639 -6.008 1.818 12.352 hybrid contribution 1.311 -0.050 -0.193 1.326 sum -9.328 -6.057 1.626 11.240 Atomic orbital electron populations 1.21594 0.92698 1.02555 1.01969 1.21312 0.98164 0.97596 0.96691 1.21810 1.01969 0.93847 1.02817 1.20701 0.82148 0.79327 0.87624 1.90667 1.55480 1.49195 1.47395 1.46136 1.07219 1.58590 1.25828 1.21379 0.93651 0.96957 0.87625 1.21914 0.92797 0.98677 1.00165 0.90339 1.21417 0.96359 0.99004 0.97545 1.21931 0.94970 0.98363 1.01952 1.21441 0.99823 0.88799 0.90423 1.48169 1.03854 1.49643 1.36315 1.18246 0.87460 0.78859 0.78876 1.90578 1.75190 1.40125 1.40319 1.20984 0.89613 1.32124 1.15381 0.90895 1.25721 1.00081 0.93204 0.94153 1.70005 1.36305 1.21981 1.11374 0.86403 0.83039 0.78249 0.79287 1.19743 1.20432 1.18857 1.21213 0.83547 0.93565 1.01319 0.92021 0.92168 0.92166 0.88580 0.91504 0.91423 0.92073 0.75898 0.91708 0.91566 0.92353 0.92006 0.91622 0.91814 0.88863 0.94125 0.92093 0.93985 0.90057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 8.48 37.16 0.32 -1.02 16 2 C -0.12 -1.26 3.26 -91.78 -0.30 -1.56 16 3 C -0.15 -1.53 9.09 37.15 0.34 -1.19 16 4 C 0.52 7.20 7.15 -10.99 -0.08 7.12 16 5 O -0.55 -9.45 15.98 5.55 0.09 -9.36 16 6 N -0.73 -9.73 5.23 -60.29 -0.32 -10.04 16 7 C 0.13 1.73 5.07 -4.04 -0.02 1.71 16 8 C -0.12 -1.69 2.39 -90.28 -0.22 -1.91 16 9 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 10 C -0.11 -1.38 5.16 -26.69 -0.14 -1.51 16 11 C -0.13 -1.92 6.08 -26.61 -0.16 -2.08 16 12 C 0.12 2.12 6.34 -3.71 -0.02 2.10 16 13 N -0.64 -13.93 2.97 -174.17 -0.52 -14.45 16 14 C 0.56 15.33 7.61 -12.99 -0.10 15.24 16 15 O -0.58 -17.96 14.48 5.20 0.08 -17.88 16 16 C -0.54 -14.76 8.88 -35.63 -0.32 -15.08 16 17 H 0.07 1.80 5.64 -52.49 -0.30 1.51 16 18 C 0.09 2.38 5.50 -17.36 -0.10 2.29 16 19 N -0.77 -22.32 11.84 55.55 0.66 -21.66 16 20 Si 0.91 19.52 29.56 -169.99 -5.02 14.49 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 24 C 0.13 2.36 5.53 -3.49 -0.02 2.34 16 25 H 0.06 0.69 8.10 -51.93 -0.42 0.26 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 28 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.75 7.57 -51.93 -0.39 0.35 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.41 5.26 7.14 -40.82 -0.29 4.97 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 1.76 5.30 -51.93 -0.28 1.48 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.27 7.09 8.29 -40.82 -0.34 6.75 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.08 1.65 6.26 -51.93 -0.33 1.33 16 LS Contribution 344.16 15.07 5.19 5.19 Total: -1.00 -33.83 344.16 -7.71 -41.54 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -7.05 Total: 5.73 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -0.81 Total: 6.45 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.17 Total: -46.15 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: 0.16 Total: -27.24 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.83 -7.71 -41.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320510096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.342 kcal (2) G-P(sol) polarization free energy of solvation -33.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds