Wall clock time and date at job start Tue Mar 31 2020 05:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21277 * 120.00432 * 2 1 4 4 N 1.34784 * 119.99779 * 180.02562 * 2 1 3 5 5 C 1.47062 * 136.05520 * 359.61788 * 4 2 1 6 6 C 1.53755 * 87.88592 * 152.97226 * 5 4 2 7 7 C 1.50700 * 114.27103 * 139.79041 * 6 5 4 8 8 O 1.21277 * 120.00286 * 261.92623 * 7 6 5 9 9 N 1.34784 * 119.99792 * 81.92228 * 7 6 5 10 10 C 1.46494 * 120.00075 * 185.48255 * 9 7 6 11 11 C 1.50704 * 109.47346 * 89.99566 * 10 9 7 12 12 H 1.07998 * 119.99580 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00071 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00058 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99950 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47030 * 90.00177 * 15 13 11 17 17 H 1.48500 * 109.47036 * 209.99943 * 15 13 11 18 18 H 1.48493 * 109.47319 * 329.99779 * 15 13 11 19 19 C 1.46503 * 119.99755 * 5.47718 * 9 7 6 20 20 C 1.53003 * 109.46827 * 96.83718 * 19 9 7 21 21 C 1.52995 * 109.47114 * 174.10084 * 20 19 9 22 22 C 1.53001 * 109.47236 * 294.10352 * 20 19 9 23 23 C 1.47066 * 136.05441 * 180.02562 * 4 2 1 24 24 H 1.09003 * 109.47001 * 239.99858 * 1 2 3 25 25 H 1.08999 * 109.47436 * 119.99780 * 1 2 3 26 26 H 1.09001 * 109.47297 * 359.97438 * 1 2 3 27 27 H 1.09007 * 113.47044 * 267.69875 * 5 4 2 28 28 H 1.09000 * 113.46962 * 38.14358 * 5 4 2 29 29 H 1.08997 * 114.39403 * 272.67950 * 6 5 4 30 30 H 1.08996 * 109.47512 * 209.99724 * 10 9 7 31 31 H 1.09010 * 109.46974 * 329.99842 * 10 9 7 32 32 H 0.97002 * 120.00034 * 179.97438 * 14 13 11 33 33 H 1.09006 * 109.46707 * 216.83258 * 19 9 7 34 34 H 1.09000 * 109.47368 * 336.83916 * 19 9 7 35 35 H 1.09003 * 109.46967 * 54.10071 * 20 19 9 36 36 H 1.09002 * 109.47099 * 59.99598 * 21 20 19 37 37 H 1.08997 * 109.46926 * 180.02562 * 21 20 19 38 38 H 1.09003 * 109.47239 * 300.00086 * 21 20 19 39 39 H 1.08996 * 109.47378 * 184.52331 * 22 20 19 40 40 H 1.09000 * 109.46598 * 304.52088 * 22 20 19 41 41 H 1.09002 * 109.47300 * 64.51762 * 22 20 19 42 42 H 1.08991 * 113.46661 * 321.85148 * 23 4 2 43 43 H 1.08995 * 113.47020 * 92.23858 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 1.8264 -2.5945 0.0056 6 6 3.1644 -2.8714 -0.6995 7 6 3.8798 -4.1037 -0.2089 8 8 4.7716 -4.0029 0.6068 9 7 3.5285 -5.3180 -0.6767 10 6 4.1391 -6.5246 -0.1135 11 6 3.3113 -7.0113 1.0480 12 1 2.4194 -6.4756 1.3374 13 6 3.6927 -8.1405 1.7412 14 7 2.9701 -8.5655 2.7545 15 14 5.2359 -9.0667 1.2410 16 1 6.4023 -8.5210 1.9806 17 1 5.0751 -10.5072 1.5638 18 1 5.4571 -8.9083 -0.2188 19 6 2.5359 -5.4310 -1.7483 20 6 3.2514 -5.5678 -3.0938 21 6 2.2221 -5.8330 -4.1941 22 6 4.0072 -4.2740 -3.4034 23 6 3.5942 -1.5741 -0.0002 24 1 -0.3633 -0.5139 0.8900 25 1 -0.3634 -0.5138 -0.8900 26 1 -0.3634 1.0277 0.0005 27 1 1.7665 -3.0227 1.0063 28 1 0.9551 -2.8281 -0.6062 29 1 3.1234 -2.8010 -1.7864 30 1 4.1836 -7.3002 -0.8781 31 1 5.1478 -6.2949 0.2302 32 1 3.2382 -9.3601 3.2419 33 1 1.9142 -6.3098 -1.5764 34 1 1.9095 -4.5391 -1.7589 35 1 3.9562 -6.3981 -3.0477 36 1 1.5173 -5.0028 -4.2401 37 1 2.7318 -5.9309 -5.1525 38 1 1.6837 -6.7548 -3.9736 39 1 4.4504 -4.3410 -4.3969 40 1 3.3154 -3.4324 -3.3701 41 1 4.7941 -4.1270 -2.6636 42 1 4.2289 -0.9381 -0.6171 43 1 4.0001 -1.7323 0.9988 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320781117.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:57 Heat of formation + Delta-G solvation = -37.979040 kcal Electronic energy + Delta-G solvation = -23271.136692 eV Core-core repulsion = 19931.822588 eV Total energy + Delta-G solvation = -3339.314104 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.85348 -39.07120 -37.44899 -36.43377 -33.81375 -32.35538 -31.25093 -29.26841 -27.94085 -27.20131 -25.98647 -25.79288 -23.83036 -21.61564 -20.38809 -19.03733 -18.39379 -17.25182 -17.01641 -16.90365 -15.91529 -15.57777 -15.17231 -14.91396 -14.61583 -14.17794 -13.93105 -13.41857 -13.25040 -12.93958 -12.82324 -12.66677 -12.60354 -12.44957 -12.31608 -12.24303 -11.92564 -11.69006 -11.56708 -11.14820 -11.06047 -10.84534 -10.78953 -10.53304 -10.51122 -10.18030 -9.99747 -9.60116 -9.18521 -8.74803 -8.64393 -7.79776 -6.14773 -4.14017 2.52821 2.74314 3.08494 3.25368 3.31300 3.33795 3.69952 4.26025 4.34690 4.41615 4.77032 4.88193 4.97164 4.98171 5.06334 5.11419 5.18389 5.20302 5.25908 5.30442 5.44484 5.53479 5.58396 5.60023 5.63440 5.70456 5.77463 5.83842 5.93939 6.04330 6.08717 6.14149 6.31609 6.39545 6.64253 6.89464 7.24694 7.54598 7.63423 8.05344 8.13844 8.39439 8.80677 8.88548 9.45693 10.98348 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016141 B = 0.005194 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.281385 B = 5389.848156 C = 6262.619811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.540 3.460 3 O -0.551 6.551 4 N -0.649 5.649 5 C 0.119 3.881 6 C -0.162 4.162 7 C 0.525 3.475 8 O -0.536 6.536 9 N -0.586 5.586 10 C 0.215 3.785 11 C -0.530 4.530 12 H 0.075 0.925 13 C 0.074 3.926 14 N -0.896 5.896 15 Si 0.875 3.125 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.266 1.266 19 C 0.115 3.885 20 C -0.118 4.118 21 C -0.143 4.143 22 C -0.149 4.149 23 C 0.125 3.875 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.128 0.872 30 H 0.030 0.970 31 H 0.038 0.962 32 H 0.265 0.735 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.080 0.920 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.249 8.943 -12.812 16.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.331 3.669 3 O -0.429 6.429 4 N -0.385 5.385 5 C -0.005 4.005 6 C -0.184 4.184 7 C 0.310 3.690 8 O -0.413 6.413 9 N -0.316 5.316 10 C 0.095 3.905 11 C -0.569 4.569 12 H 0.093 0.907 13 C -0.129 4.129 14 N -0.535 5.535 15 Si 0.702 3.298 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.191 1.191 19 C -0.010 4.010 20 C -0.138 4.138 21 C -0.201 4.201 22 C -0.206 4.206 23 C 0.003 3.997 24 H 0.107 0.893 25 H 0.106 0.894 26 H 0.110 0.890 27 H 0.116 0.884 28 H 0.104 0.896 29 H 0.146 0.854 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.099 0.901 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.596 9.611 -12.220 16.212 hybrid contribution 0.647 -0.805 -0.109 1.038 sum -3.949 8.807 -12.329 15.658 Atomic orbital electron populations 1.21859 0.91161 1.05245 1.04407 1.20368 0.90105 0.81231 0.75222 1.90719 1.70948 1.30350 1.50876 1.49693 1.09946 1.05556 1.73297 1.23006 0.96745 0.79007 1.01702 1.23446 0.97677 0.94734 1.02516 1.19744 0.83595 0.83850 0.81782 1.90688 1.30933 1.86026 1.33691 1.47847 1.41403 1.06669 1.35661 1.19670 0.94956 0.81575 0.94305 1.21297 1.11323 1.11002 1.13247 0.90720 1.24836 0.96586 0.96928 0.94514 1.69887 1.38911 1.24439 1.20233 0.86872 0.84143 0.79259 0.79556 1.19898 1.21087 1.19051 1.21606 0.90868 1.02916 0.85560 1.21581 0.98209 0.98815 0.95171 1.21761 0.98716 1.01698 0.97890 1.21970 1.00250 0.96994 1.01422 1.22825 0.83584 0.91342 1.01994 0.89318 0.89426 0.88961 0.88442 0.89584 0.85417 0.95184 0.94446 0.92516 0.89732 0.91179 0.90515 0.92763 0.92775 0.92314 0.92777 0.92784 0.92448 0.90110 0.88138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 10.15 36.01 0.37 -1.09 16 2 C 0.54 7.29 8.19 -10.98 -0.09 7.20 16 3 O -0.55 -9.73 17.86 5.56 0.10 -9.63 16 4 N -0.65 -8.46 3.69 -185.04 -0.68 -9.14 16 5 C 0.12 1.40 7.52 -8.37 -0.06 1.34 16 6 C -0.16 -2.14 2.79 -91.11 -0.25 -2.40 16 7 C 0.52 9.52 6.02 -10.98 -0.07 9.46 16 8 O -0.54 -12.12 15.54 5.56 0.09 -12.03 16 9 N -0.59 -10.71 2.26 -175.05 -0.40 -11.11 16 10 C 0.22 4.91 4.29 -5.19 -0.02 4.88 16 11 C -0.53 -14.32 9.94 -34.44 -0.34 -14.67 16 12 H 0.07 2.19 8.06 -52.49 -0.42 1.77 16 13 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 14 N -0.90 -26.68 13.96 55.43 0.77 -25.91 16 15 Si 0.87 20.87 27.47 -169.99 -4.67 16.20 16 16 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 18 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 19 C 0.11 1.57 4.86 -4.04 -0.02 1.55 16 20 C -0.12 -1.39 3.11 -90.62 -0.28 -1.67 16 21 C -0.14 -1.32 9.19 37.15 0.34 -0.98 16 22 C -0.15 -1.62 7.71 37.16 0.29 -1.33 16 23 C 0.13 1.76 7.93 -8.49 -0.07 1.69 16 24 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.09 0.75 8.12 -51.93 -0.42 0.33 16 27 H 0.10 1.29 8.10 -51.93 -0.42 0.87 16 28 H 0.09 0.76 7.90 -51.93 -0.41 0.35 16 29 H 0.13 1.42 4.57 -51.93 -0.24 1.18 16 30 H 0.03 0.66 6.98 -51.93 -0.36 0.30 16 31 H 0.04 0.93 6.78 -51.92 -0.35 0.58 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.08 1.24 8.12 -51.93 -0.42 0.82 16 34 H 0.07 0.77 5.72 -51.93 -0.30 0.48 16 35 H 0.08 1.03 7.99 -51.93 -0.42 0.62 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.05 0.51 6.29 -51.93 -0.33 0.18 16 41 H 0.06 0.74 6.97 -51.93 -0.36 0.38 16 42 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.10 1.58 7.52 -51.93 -0.39 1.19 16 LS Contribution 347.13 15.07 5.23 5.23 Total: -1.00 -34.27 347.13 -6.83 -41.11 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -6.97 Total: -0.68 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -0.31 Total: 5.96 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -0.30 Total: -46.16 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: 0.19 Total: -21.66 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.27 -6.83 -41.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320781117.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.128 kcal (2) G-P(sol) polarization free energy of solvation -34.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds