Wall clock time and date at job start Tue Mar 31 2020 05:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47219 * 2 1 4 4 H 1.09000 * 110.00111 * 303.70366 * 3 2 1 5 5 C 1.54323 * 109.87866 * 64.79591 * 3 2 1 6 6 C 1.55165 * 103.10021 * 141.52304 * 5 3 2 7 7 C 1.55127 * 101.48304 * 324.71552 * 6 5 3 8 8 N 1.47022 * 109.88008 * 182.60402 * 3 2 1 9 9 C 1.34768 * 125.65130 * 61.68611 * 8 3 2 10 10 O 1.21353 * 119.99914 * 5.09402 * 9 8 3 11 11 C 1.49456 * 120.00243 * 185.10198 * 9 8 3 12 12 O 1.21344 * 119.99618 * 359.97438 * 11 9 8 13 13 N 1.34774 * 120.00051 * 179.97438 * 11 9 8 14 14 C 1.46507 * 119.99913 * 179.97438 * 13 11 9 15 15 C 1.53002 * 109.46661 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.46378 * 180.02562 * 15 14 13 17 17 C 1.50704 * 109.46796 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99987 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99956 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99835 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99848 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47418 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47125 * 120.00267 * 21 19 17 24 24 H 1.48500 * 109.46898 * 240.00110 * 21 19 17 25 25 H 1.09001 * 109.47614 * 54.42606 * 1 2 3 26 26 H 1.08996 * 109.47569 * 174.43334 * 1 2 3 27 27 H 1.09010 * 109.46871 * 294.42965 * 1 2 3 28 28 H 1.09005 * 109.46698 * 240.00478 * 2 1 3 29 29 H 1.08996 * 109.47842 * 120.00635 * 2 1 3 30 30 H 1.09003 * 110.72353 * 259.97218 * 5 3 2 31 31 H 1.09004 * 110.72005 * 23.07127 * 5 3 2 32 32 H 1.08998 * 111.00609 * 82.65853 * 6 5 3 33 33 H 1.08998 * 110.99826 * 206.51119 * 6 5 3 34 34 H 1.08997 * 110.20560 * 277.95503 * 7 6 5 35 35 H 1.09001 * 110.50862 * 155.75332 * 7 6 5 36 36 H 0.97005 * 120.00333 * 0.02562 * 13 11 9 37 37 H 1.08999 * 109.46835 * 300.00386 * 14 13 11 38 38 H 1.08998 * 109.46506 * 60.00860 * 14 13 11 39 39 H 1.09005 * 109.47008 * 299.99487 * 15 14 13 40 40 H 1.08991 * 109.47204 * 60.00502 * 15 14 13 41 41 H 1.08996 * 109.47322 * 299.99774 * 16 15 14 42 42 H 1.09004 * 109.47116 * 60.00624 * 16 15 14 43 43 H 0.97005 * 119.99821 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6284 1.9835 -0.8521 5 6 1.6322 2.1433 1.3131 6 6 2.8738 3.0112 1.6488 7 6 4.0292 2.1016 1.1548 8 7 3.5088 1.4535 -0.0628 9 6 4.2558 0.9546 -1.0675 10 8 3.7188 0.5252 -2.0675 11 6 5.7455 0.9299 -0.9501 12 8 6.2825 1.3595 0.0497 13 7 6.4925 0.4305 -1.9546 14 6 7.9529 0.4068 -1.8397 15 6 8.5542 -0.2046 -3.1068 16 6 10.0793 -0.2298 -2.9865 17 6 10.6716 -0.8326 -4.2343 18 1 10.0250 -1.1641 -5.0333 19 6 12.0391 -0.9599 -4.3562 20 7 12.8264 -0.5558 -3.3834 21 14 12.7733 -1.7064 -5.9031 22 1 11.6823 -2.0774 -6.8397 23 1 13.6683 -0.7162 -6.5539 24 1 13.5530 -2.9187 -5.5457 25 1 -0.3634 0.5978 -0.8358 26 1 -0.3634 -1.0227 -0.0997 27 1 -0.3633 0.4251 0.9358 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 0.7538 2.7700 1.1592 31 1 1.4490 1.4115 2.1000 32 1 2.8546 3.9508 1.0966 33 1 2.9459 3.1915 2.7213 34 1 4.2684 1.3532 1.9103 35 1 4.9110 2.6978 0.9199 36 1 6.0633 0.0874 -2.7540 37 1 8.3241 1.4242 -1.7160 38 1 8.2395 -0.1923 -0.9755 39 1 8.1829 -1.2219 -3.2308 40 1 8.2674 0.3948 -3.9708 41 1 10.4508 0.7873 -2.8622 42 1 10.3657 -0.8295 -2.1225 43 1 13.7885 -0.6458 -3.4691 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322751361.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:36 Heat of formation + Delta-G solvation = -90.732191 kcal Electronic energy + Delta-G solvation = -21937.896767 eV Core-core repulsion = 18596.295114 eV Total energy + Delta-G solvation = -3341.601653 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.90541 -39.08807 -37.69795 -35.62224 -33.80123 -33.33267 -31.85148 -31.23553 -28.21489 -27.26154 -25.40402 -23.72626 -22.78036 -22.04672 -20.91524 -20.57489 -19.38142 -17.68271 -17.18715 -16.44538 -16.33192 -15.68683 -15.33219 -14.97168 -14.63461 -14.45528 -14.23025 -13.84961 -13.74756 -13.49836 -13.31613 -12.67942 -12.43791 -12.31925 -11.99135 -11.90674 -11.80622 -11.75392 -11.56031 -11.26202 -11.05110 -10.93028 -10.79947 -10.75003 -10.57778 -9.90554 -9.70020 -9.31852 -9.11393 -9.04634 -8.88309 -8.38605 -6.03157 -4.06000 1.45500 2.25807 3.24064 3.30015 3.37579 3.41443 3.49208 4.18335 4.22081 4.43715 4.45551 4.52910 4.78766 4.84579 4.94764 5.05024 5.16508 5.32930 5.32996 5.39644 5.53682 5.59811 5.60280 5.64368 5.69497 5.72077 5.81956 5.82500 5.93047 6.08161 6.11140 6.30221 6.54326 6.71843 6.95230 7.03038 7.33215 7.61695 7.73169 7.73548 7.95461 8.08401 8.36787 9.00776 9.58449 11.08201 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038302 B = 0.002625 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.851800 B =10662.434309 C =11222.663319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C 0.135 3.865 4 H 0.080 0.920 5 C -0.127 4.127 6 C -0.137 4.137 7 C 0.100 3.900 8 N -0.591 5.591 9 C 0.522 3.478 10 O -0.521 6.521 11 C 0.502 3.498 12 O -0.523 6.523 13 N -0.692 5.692 14 C 0.115 3.885 15 C -0.123 4.123 16 C 0.024 3.976 17 C -0.522 4.522 18 H 0.057 0.943 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.411 0.589 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.543 5.652 10.797 27.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.033 3.967 4 H 0.098 0.902 5 C -0.165 4.165 6 C -0.175 4.175 7 C -0.022 4.022 8 N -0.326 5.326 9 C 0.305 3.695 10 O -0.397 6.397 11 C 0.282 3.718 12 O -0.399 6.399 13 N -0.344 5.344 14 C -0.007 4.007 15 C -0.161 4.161 16 C -0.013 4.013 17 C -0.560 4.560 18 H 0.075 0.925 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.116 0.884 36 H 0.246 0.754 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -24.176 5.704 10.948 27.145 hybrid contribution 0.377 -0.595 -1.165 1.361 sum -23.799 5.109 9.783 26.234 Atomic orbital electron populations 1.21706 0.94838 1.02056 1.01835 1.21901 0.96419 0.95942 1.03280 1.21766 0.79201 0.96934 0.98823 0.90198 1.22744 0.98435 0.99082 0.96271 1.22909 0.94154 0.98375 1.02111 1.22623 0.97579 0.96059 0.85923 1.48349 1.06880 1.57233 1.20108 1.20030 0.88083 0.78851 0.82511 1.90747 1.73756 1.46251 1.28940 1.19942 0.87473 0.80046 0.84355 1.90719 1.73545 1.45975 1.29709 1.46068 1.08578 1.60126 1.19598 1.21835 0.75937 1.02088 1.00868 1.21927 1.00332 0.99609 0.94196 1.19038 0.87106 0.97647 0.97555 1.21241 0.91650 1.40529 1.02575 0.92519 1.25029 0.97362 0.95613 0.96490 1.69974 1.03906 1.47333 1.32115 0.86517 0.79184 0.78906 0.83285 1.19723 1.20996 1.20990 0.92504 0.92400 0.92557 0.90576 0.91665 0.89885 0.90199 0.90517 0.89487 0.90844 0.88385 0.75356 0.91131 0.91131 0.92443 0.92435 0.96197 0.96199 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.64 37.15 0.36 -0.61 16 2 C -0.14 -1.22 5.38 -26.73 -0.14 -1.37 16 3 C 0.14 1.22 2.90 -66.95 -0.19 1.03 16 4 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 5 C -0.13 -0.77 5.59 -24.89 -0.14 -0.91 16 6 C -0.14 -0.89 7.11 -24.46 -0.17 -1.06 16 7 C 0.10 0.98 5.89 -2.41 -0.01 0.96 16 8 N -0.59 -6.80 3.07 -163.38 -0.50 -7.31 16 9 C 0.52 7.42 7.65 -11.59 -0.09 7.33 16 10 O -0.52 -8.22 15.67 5.49 0.09 -8.14 16 11 C 0.50 7.77 7.85 -11.58 -0.09 7.68 16 12 O -0.52 -8.83 13.91 5.50 0.08 -8.75 16 13 N -0.69 -10.66 5.55 -60.72 -0.34 -11.00 16 14 C 0.11 1.99 5.67 -4.04 -0.02 1.96 16 15 C -0.12 -2.40 5.27 -26.73 -0.14 -2.55 16 16 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 17 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 21 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.30 7.55 -51.92 -0.39 -0.10 16 28 H 0.08 0.87 6.95 -51.93 -0.36 0.51 16 29 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.43 7.77 -51.93 -0.40 0.03 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 1.11 6.48 -51.93 -0.34 0.77 16 36 H 0.41 5.84 7.95 -40.82 -0.32 5.51 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 351.50 15.07 5.30 5.30 Total: -1.00 -31.70 351.50 -8.14 -39.83 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -7.27 Total: -0.03 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -1.20 Total: -0.44 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: -0.10 Total: -44.31 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: 0.16 Total: -16.88 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.70 -8.14 -39.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322751361.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.900 kcal (2) G-P(sol) polarization free energy of solvation -31.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds